Wall clock time and date at job start Fri Apr 10 2020 18:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 110.21032 * 2 1 4 4 C 1.52992 * 109.47274 * 63.07164 * 3 2 1 5 5 C 1.50700 * 109.47257 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 4 9 9 C 1.53005 * 110.64365 * 300.69904 * 8 7 5 10 10 C 1.55157 * 110.71925 * 177.56058 * 8 7 5 11 11 C 1.55392 * 101.36543 * 277.04450 * 10 8 7 12 12 N 1.47419 * 104.87129 * 323.01256 * 11 10 8 13 13 C 1.36934 * 125.65253 * 204.16862 * 12 11 10 14 14 H 1.07999 * 120.00515 * 179.97438 * 13 12 11 15 15 C 1.38819 * 119.99816 * 359.96262 * 13 12 11 16 16 N 1.31621 * 119.99842 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00325 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46794 * 89.99395 * 17 15 13 19 19 H 1.48492 * 109.47210 * 209.99642 * 17 15 13 20 20 H 1.48497 * 109.46933 * 330.00246 * 17 15 13 21 21 C 1.47029 * 108.70484 * 24.13592 * 12 11 10 22 22 C 1.54483 * 110.24800 * 238.07560 * 2 1 3 23 23 C 1.54621 * 101.76085 * 215.49447 * 22 2 1 24 24 C 1.51278 * 104.20326 * 24.79583 * 23 22 2 25 25 O 1.21273 * 124.95014 * 163.71408 * 24 23 22 26 26 N 1.34422 * 110.11013 * 343.74624 * 24 23 22 27 27 H 1.09000 * 109.47223 * 60.70139 * 1 2 3 28 28 H 1.09002 * 109.46696 * 180.70017 * 1 2 3 29 29 H 1.09000 * 109.47132 * 300.70000 * 1 2 3 30 30 H 1.09004 * 109.47166 * 303.06789 * 3 2 1 31 31 H 1.09005 * 109.46988 * 183.07177 * 3 2 1 32 32 H 1.09004 * 109.47330 * 59.99726 * 4 3 2 33 33 H 1.08997 * 109.47279 * 300.00213 * 4 3 2 34 34 H 0.96995 * 120.00015 * 359.72695 * 7 5 4 35 35 H 1.08996 * 109.47089 * 59.30065 * 9 8 7 36 36 H 1.08992 * 109.47101 * 179.30094 * 9 8 7 37 37 H 1.09006 * 109.46942 * 299.30448 * 9 8 7 38 38 H 1.09008 * 111.00648 * 35.21098 * 10 8 7 39 39 H 1.08997 * 111.01148 * 159.06357 * 10 8 7 40 40 H 1.09002 * 110.34151 * 204.16629 * 11 10 8 41 41 H 1.08996 * 110.44164 * 81.91464 * 11 10 8 42 42 H 0.96995 * 120.00152 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.87970 * 239.52497 * 21 12 11 44 44 H 1.08993 * 109.88541 * 118.35723 * 21 12 11 45 45 H 1.09008 * 110.96408 * 333.61018 * 22 2 1 46 46 H 1.08993 * 110.96835 * 97.33061 * 22 2 1 47 47 H 1.09000 * 110.48739 * 143.47838 * 23 22 2 48 48 H 1.09000 * 110.48363 * 266.11470 * 23 22 2 49 49 H 0.97001 * 124.34987 * 179.59068 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4359 0.0000 4 6 1.6218 2.1401 1.2860 5 6 2.1430 3.5542 1.2863 6 8 2.7988 3.9589 0.3499 7 7 1.8802 4.3690 2.3273 8 6 2.3864 5.7437 2.3272 9 6 3.9134 5.7563 2.2323 10 6 1.9088 6.5046 3.5923 11 6 0.4869 6.9573 3.1588 12 7 0.6160 7.2924 1.7290 13 6 -0.1955 8.1484 1.0334 14 1 -0.0169 8.3285 -0.0163 15 6 -1.2479 8.7844 1.6776 16 7 -1.4660 8.5643 2.9568 17 14 -2.3554 9.9516 0.7286 18 1 -3.4938 9.1934 0.1505 19 1 -2.8728 10.9986 1.6458 20 1 -1.5800 10.5904 -0.3649 21 6 1.7609 6.5558 1.1737 22 6 2.0647 -0.7664 -1.2301 23 6 3.3300 -1.4432 -0.6543 24 6 3.0550 -1.5427 0.8299 25 8 3.6616 -2.2537 1.6028 26 7 2.0398 -0.7288 1.1674 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 1.6579 1.9706 -0.8612 31 1 3.1472 1.4223 -0.0551 32 1 2.0225 1.6054 2.1472 33 1 0.5333 2.1537 1.3411 34 1 1.3524 4.0465 3.0744 35 1 4.2246 5.2550 1.3159 36 1 4.2683 6.7868 2.2212 37 1 4.3352 5.2359 3.0923 38 1 1.8646 5.8395 4.4549 39 1 2.5477 7.3639 3.7960 40 1 0.1787 7.8346 3.7277 41 1 -0.2288 6.1467 3.2954 42 1 -2.2015 9.0084 3.4068 43 1 2.4938 7.2566 0.7738 44 1 1.4219 5.8818 0.3871 45 1 1.3442 -1.5108 -1.5693 46 1 2.3215 -0.0794 -2.0364 47 1 3.4615 -2.4357 -1.0853 48 1 4.2098 -0.8267 -0.8388 49 1 1.6891 -0.6353 2.0669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754685289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:50 Heat of formation + Delta-G solvation = -55.566325 kcal Electronic energy + Delta-G solvation = -28424.321095 eV Core-core repulsion = 24579.517059 eV Total energy + Delta-G solvation = -3844.804036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00692 -39.85588 -37.73357 -37.10899 -34.01424 -33.15456 -31.86980 -31.66258 -30.32342 -29.52766 -28.64212 -25.85466 -25.63910 -24.16855 -23.45503 -21.10060 -20.91117 -20.37153 -19.90801 -19.00467 -17.39245 -17.03950 -16.69605 -16.08230 -15.80996 -15.56031 -14.99233 -14.69781 -14.46211 -14.11417 -13.97252 -13.81062 -13.51648 -13.43478 -12.94556 -12.90108 -12.75818 -12.55884 -12.40224 -12.23065 -11.96196 -11.85590 -11.74181 -11.58157 -11.46022 -11.16174 -10.95513 -10.87904 -10.84643 -10.41112 -10.36207 -10.10763 -10.10379 -9.93949 -9.67547 -9.41708 -9.23845 -8.67392 -8.61895 -6.83084 -5.67063 -3.07425 2.36448 2.90448 3.05484 3.38499 3.41416 3.44158 3.46086 3.96466 4.11898 4.34805 4.48072 4.59383 4.64899 4.85826 4.98980 5.01767 5.11770 5.22191 5.23391 5.35893 5.38116 5.41056 5.45424 5.49580 5.56374 5.62375 5.66117 5.71357 5.74085 5.88224 6.01082 6.04040 6.16071 6.22086 6.34243 6.44759 6.50723 6.55663 6.69455 6.76986 6.81460 7.13907 7.42758 7.61727 7.78844 7.86872 8.00605 8.33504 8.53590 9.21471 9.82209 10.47194 11.37237 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.002792 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.975928 B =10024.781897 C =10715.642969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 C -0.105 4.105 4 C -0.143 4.143 5 C 0.514 3.486 6 O -0.540 6.540 7 N -0.709 5.709 8 C 0.158 3.842 9 C -0.150 4.150 10 C -0.148 4.148 11 C 0.154 3.846 12 N -0.604 5.604 13 C -0.217 4.217 14 H 0.076 0.924 15 C -0.013 4.013 16 N -0.925 5.925 17 Si 0.914 3.086 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.139 3.861 22 C -0.123 4.123 23 C -0.158 4.158 24 C 0.520 3.480 25 O -0.541 6.541 26 N -0.721 5.721 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.397 0.603 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.010 0.990 42 H 0.251 0.749 43 H 0.029 0.971 44 H 0.032 0.968 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -18.009 -3.601 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 C -0.144 4.144 4 C -0.183 4.183 5 C 0.300 3.700 6 O -0.417 6.417 7 N -0.359 5.359 8 C 0.073 3.927 9 C -0.208 4.208 10 C -0.187 4.187 11 C 0.029 3.971 12 N -0.330 5.330 13 C -0.346 4.346 14 H 0.094 0.906 15 C -0.208 4.208 16 N -0.574 5.574 17 Si 0.745 3.255 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.012 3.988 22 C -0.161 4.161 23 C -0.198 4.198 24 C 0.307 3.693 25 O -0.418 6.418 26 N -0.376 5.376 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.028 0.972 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.103 0.897 46 H 0.113 0.887 47 H 0.119 0.881 48 H 0.123 0.877 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.575 -17.948 -3.965 19.522 hybrid contribution -1.173 0.546 0.377 1.348 sum 5.402 -17.402 -3.589 18.571 Atomic orbital electron populations 1.22164 0.93030 1.02755 1.03671 1.21139 0.94764 0.91915 0.85386 1.21731 1.02208 0.92547 0.97942 1.21706 1.02855 0.93566 1.00217 1.20457 0.80081 0.87222 0.82252 1.90657 1.39697 1.76624 1.34739 1.46020 1.55049 1.12807 1.22072 1.21339 0.93006 0.80530 0.97874 1.22042 0.94241 1.02144 1.02403 1.23437 1.01552 0.99024 0.94645 1.22001 0.88917 1.00257 0.85933 1.44503 1.31622 1.50425 1.06487 1.19094 1.05962 1.16422 0.93111 0.90564 1.24766 0.99021 1.00779 0.96244 1.69775 1.32233 1.46875 1.08522 0.86069 0.80553 0.80338 0.78559 1.21710 1.21670 1.20693 1.21583 0.90233 0.93146 0.93831 1.22700 0.96643 0.99827 0.96911 1.22367 1.00154 1.03888 0.93363 1.20886 0.79005 0.78371 0.91057 1.90757 1.52144 1.41195 1.57672 1.46431 1.36157 1.43664 1.11369 0.90467 0.91849 0.91501 0.89451 0.90608 0.89484 0.88695 0.76959 0.90845 0.91876 0.93300 0.91942 0.90608 0.87522 0.97213 0.93806 0.95336 0.95020 0.89710 0.88714 0.88143 0.87669 0.75315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.54 37.16 0.32 -0.62 16 2 C 0.15 1.04 0.87 -130.90 -0.11 0.93 16 3 C -0.11 -0.94 3.67 -26.73 -0.10 -1.04 16 4 C -0.14 -1.39 5.27 -27.89 -0.15 -1.54 16 5 C 0.51 7.42 7.04 -10.98 -0.08 7.34 16 6 O -0.54 -9.54 12.93 5.56 0.07 -9.46 16 7 N -0.71 -10.54 5.15 -45.91 -0.24 -10.77 16 8 C 0.16 2.77 0.80 -129.99 -0.10 2.67 16 9 C -0.15 -2.35 8.41 37.16 0.31 -2.04 16 10 C -0.15 -2.64 6.11 -24.32 -0.15 -2.79 16 11 C 0.15 3.58 5.88 -2.27 -0.01 3.57 16 12 N -0.60 -15.44 3.40 -169.77 -0.58 -16.01 16 13 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 14 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 15 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 16 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 17 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C 0.14 3.05 6.16 -3.06 -0.02 3.03 16 22 C -0.12 -0.69 6.21 -25.10 -0.16 -0.84 16 23 C -0.16 -1.10 6.86 -26.75 -0.18 -1.28 16 24 C 0.52 5.36 8.43 -10.86 -0.09 5.27 16 25 O -0.54 -7.96 18.03 5.56 0.10 -7.86 16 26 N -0.72 -5.71 4.87 -46.61 -0.23 -5.94 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.40 6.55 -51.93 -0.34 0.06 16 30 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.09 0.72 7.39 -51.93 -0.38 0.33 16 33 H 0.09 0.82 6.55 -51.93 -0.34 0.48 16 34 H 0.40 5.03 8.48 -40.82 -0.35 4.68 16 35 H 0.07 1.24 6.20 -51.93 -0.32 0.92 16 36 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.94 8.06 -51.92 -0.42 0.52 16 39 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 40 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.03 0.65 7.80 -51.93 -0.41 0.24 16 44 H 0.03 0.75 6.68 -51.93 -0.35 0.40 16 45 H 0.08 0.39 7.91 -51.92 -0.41 -0.02 16 46 H 0.09 0.46 7.89 -51.93 -0.41 0.05 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.41 2.91 8.65 -40.82 -0.35 2.56 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -34.44 380.74 -8.51 -42.95 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.14 Total: 4.37 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.77 Total: 5.95 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.48 Total: -58.68 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.17 Total: -17.33 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.44 -8.51 -42.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754685289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.613 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds