Wall clock time and date at job start Fri Apr 10 2020 18:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 110.21032 * 2 1 4 4 C 1.52992 * 109.47274 * 63.07164 * 3 2 1 5 5 C 1.50700 * 109.47257 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 4 9 9 C 1.53005 * 110.64365 * 300.69904 * 8 7 5 10 10 C 1.55157 * 110.71925 * 177.56058 * 8 7 5 11 11 C 1.55392 * 101.36543 * 277.04450 * 10 8 7 12 12 N 1.47419 * 104.87129 * 323.01256 * 11 10 8 13 13 C 1.36934 * 125.65253 * 204.16862 * 12 11 10 14 14 H 1.07999 * 120.00515 * 179.97438 * 13 12 11 15 15 C 1.38819 * 119.99816 * 359.96262 * 13 12 11 16 16 N 1.31621 * 119.99842 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00325 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46794 * 89.99395 * 17 15 13 19 19 H 1.48492 * 109.47210 * 209.99642 * 17 15 13 20 20 H 1.48497 * 109.46933 * 330.00246 * 17 15 13 21 21 C 1.47029 * 108.70484 * 24.13592 * 12 11 10 22 22 C 1.54483 * 110.24800 * 238.07560 * 2 1 3 23 23 C 1.54621 * 101.76085 * 215.49447 * 22 2 1 24 24 C 1.51278 * 104.20326 * 24.79583 * 23 22 2 25 25 O 1.21273 * 124.95014 * 163.71408 * 24 23 22 26 26 N 1.34422 * 110.11013 * 343.74624 * 24 23 22 27 27 H 1.09000 * 109.47223 * 60.70139 * 1 2 3 28 28 H 1.09002 * 109.46696 * 180.70017 * 1 2 3 29 29 H 1.09000 * 109.47132 * 300.70000 * 1 2 3 30 30 H 1.09004 * 109.47166 * 303.06789 * 3 2 1 31 31 H 1.09005 * 109.46988 * 183.07177 * 3 2 1 32 32 H 1.09004 * 109.47330 * 59.99726 * 4 3 2 33 33 H 1.08997 * 109.47279 * 300.00213 * 4 3 2 34 34 H 0.96995 * 120.00015 * 359.72695 * 7 5 4 35 35 H 1.08996 * 109.47089 * 59.30065 * 9 8 7 36 36 H 1.08992 * 109.47101 * 179.30094 * 9 8 7 37 37 H 1.09006 * 109.46942 * 299.30448 * 9 8 7 38 38 H 1.09008 * 111.00648 * 35.21098 * 10 8 7 39 39 H 1.08997 * 111.01148 * 159.06357 * 10 8 7 40 40 H 1.09002 * 110.34151 * 204.16629 * 11 10 8 41 41 H 1.08996 * 110.44164 * 81.91464 * 11 10 8 42 42 H 0.96995 * 120.00152 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.87970 * 239.52497 * 21 12 11 44 44 H 1.08993 * 109.88541 * 118.35723 * 21 12 11 45 45 H 1.09008 * 110.96408 * 333.61018 * 22 2 1 46 46 H 1.08993 * 110.96835 * 97.33061 * 22 2 1 47 47 H 1.09000 * 110.48739 * 143.47838 * 23 22 2 48 48 H 1.09000 * 110.48363 * 266.11470 * 23 22 2 49 49 H 0.97001 * 124.34987 * 179.59068 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4359 0.0000 4 6 1.6218 2.1401 1.2860 5 6 2.1430 3.5542 1.2863 6 8 2.7988 3.9589 0.3499 7 7 1.8802 4.3690 2.3273 8 6 2.3864 5.7437 2.3272 9 6 3.9134 5.7563 2.2323 10 6 1.9088 6.5046 3.5923 11 6 0.4869 6.9573 3.1588 12 7 0.6160 7.2924 1.7290 13 6 -0.1955 8.1484 1.0334 14 1 -0.0169 8.3285 -0.0163 15 6 -1.2479 8.7844 1.6776 16 7 -1.4660 8.5643 2.9568 17 14 -2.3554 9.9516 0.7286 18 1 -3.4938 9.1934 0.1505 19 1 -2.8728 10.9986 1.6458 20 1 -1.5800 10.5904 -0.3649 21 6 1.7609 6.5558 1.1737 22 6 2.0647 -0.7664 -1.2301 23 6 3.3300 -1.4432 -0.6543 24 6 3.0550 -1.5427 0.8299 25 8 3.6616 -2.2537 1.6028 26 7 2.0398 -0.7288 1.1674 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8836 30 1 1.6579 1.9706 -0.8612 31 1 3.1472 1.4223 -0.0551 32 1 2.0225 1.6054 2.1472 33 1 0.5333 2.1537 1.3411 34 1 1.3524 4.0465 3.0744 35 1 4.2246 5.2550 1.3159 36 1 4.2683 6.7868 2.2212 37 1 4.3352 5.2359 3.0923 38 1 1.8646 5.8395 4.4549 39 1 2.5477 7.3639 3.7960 40 1 0.1787 7.8346 3.7277 41 1 -0.2288 6.1467 3.2954 42 1 -2.2015 9.0084 3.4068 43 1 2.4938 7.2566 0.7738 44 1 1.4219 5.8818 0.3871 45 1 1.3442 -1.5108 -1.5693 46 1 2.3215 -0.0794 -2.0364 47 1 3.4615 -2.4357 -1.0853 48 1 4.2098 -0.8267 -0.8388 49 1 1.6891 -0.6353 2.0669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754685289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:49 Heat of formation + Delta-G solvation = -80.253233 kcal Electronic energy + Delta-G solvation = -28425.391599 eV Core-core repulsion = 24579.517059 eV Total energy + Delta-G solvation = -3845.874540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74711 -41.10068 -39.01131 -38.18109 -35.70885 -34.06538 -33.45106 -32.26089 -31.75216 -30.56087 -30.16178 -27.54774 -26.51018 -25.44017 -24.60768 -22.31565 -21.86851 -21.71357 -20.73779 -20.39432 -18.97511 -18.20424 -17.70618 -17.15494 -16.85716 -16.69543 -16.62289 -15.82597 -15.60471 -15.44511 -15.05838 -14.83492 -14.60395 -14.53893 -14.11478 -14.04996 -13.86365 -13.57445 -13.41648 -13.32245 -13.22538 -13.04489 -12.97842 -12.82579 -12.76555 -12.43260 -12.16939 -12.08319 -12.03287 -11.95093 -11.77509 -11.68025 -11.51740 -11.45885 -10.92388 -10.75256 -10.54923 -10.12201 -9.95424 -8.88765 -7.78966 -5.22389 1.45719 1.46861 1.56048 1.58962 1.76732 2.27626 2.41974 2.48495 3.30473 3.36076 3.56190 3.58418 3.71297 3.74014 3.97747 4.01808 4.02407 4.12227 4.18255 4.33363 4.40234 4.52685 4.60509 4.64313 4.66329 4.76874 4.82528 4.87284 4.91164 4.94049 4.97461 5.01858 5.03925 5.09471 5.15301 5.18126 5.25130 5.32793 5.39030 5.42966 5.61463 5.72795 5.81211 5.91222 6.07802 6.30663 6.70065 7.10988 7.27528 7.39434 7.77194 8.40739 9.22350 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.002792 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.975928 B =10024.781897 C =10715.642969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 C -0.101 4.101 4 C -0.134 4.134 5 C 0.507 3.493 6 O -0.575 6.575 7 N -0.707 5.707 8 C 0.169 3.831 9 C -0.140 4.140 10 C -0.129 4.129 11 C 0.157 3.843 12 N -0.623 5.623 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.061 4.061 16 N -0.944 5.944 17 Si 0.978 3.022 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.139 3.861 22 C -0.117 4.117 23 C -0.154 4.154 24 C 0.512 3.488 25 O -0.593 6.593 26 N -0.711 5.711 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.409 0.591 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.074 0.926 41 H -0.005 1.005 42 H 0.248 0.752 43 H 0.017 0.983 44 H 0.011 0.989 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 -19.047 -3.725 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.074 3.926 3 C -0.140 4.140 4 C -0.174 4.174 5 C 0.295 3.705 6 O -0.454 6.454 7 N -0.359 5.359 8 C 0.082 3.918 9 C -0.199 4.199 10 C -0.168 4.168 11 C 0.032 3.968 12 N -0.349 5.349 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.254 4.254 16 N -0.594 5.594 17 Si 0.806 3.194 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.199 1.199 21 C 0.013 3.987 22 C -0.155 4.155 23 C -0.194 4.194 24 C 0.300 3.700 25 O -0.474 6.474 26 N -0.365 5.365 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.245 0.755 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.013 0.987 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.029 0.971 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.130 0.870 48 H 0.127 0.873 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.338 -18.990 -4.088 20.433 hybrid contribution -1.131 0.908 0.381 1.500 sum 5.207 -18.082 -3.707 19.178 Atomic orbital electron populations 1.22165 0.91882 1.03428 1.04006 1.21147 0.95435 0.90522 0.85494 1.21682 1.01411 0.93692 0.97203 1.21729 1.03659 0.90484 1.01499 1.21278 0.79239 0.88686 0.81284 1.90645 1.41235 1.77621 1.35926 1.45983 1.55269 1.11704 1.22930 1.21111 0.93968 0.81373 0.95377 1.21952 0.92543 1.02519 1.02873 1.23282 0.97661 0.99884 0.95962 1.21811 0.91990 0.98368 0.84624 1.44777 1.32112 1.50436 1.07599 1.19368 1.06947 1.17401 0.93338 0.91190 1.25549 1.00300 1.02291 0.97240 1.70012 1.32373 1.47424 1.09564 0.85088 0.78628 0.78243 0.77432 1.21279 1.21564 1.19928 1.21648 0.89085 0.92791 0.95178 1.22759 0.96155 1.00101 0.96464 1.22402 1.01040 1.04873 0.91108 1.21441 0.78722 0.77740 0.92135 1.90725 1.53990 1.43457 1.59243 1.46471 1.35308 1.42723 1.12013 0.89941 0.91019 0.91420 0.90214 0.91902 0.87501 0.87100 0.75473 0.92143 0.91703 0.90737 0.88201 0.90262 0.90853 0.98678 0.94188 0.96515 0.97066 0.88034 0.87646 0.87018 0.87274 0.74923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.54 71.98 0.61 -0.82 16 2 C 0.16 1.81 0.87 4.06 0.00 1.81 16 3 C -0.10 -1.63 3.67 30.59 0.11 -1.52 16 4 C -0.13 -2.34 5.27 29.85 0.16 -2.18 16 5 C 0.51 14.03 7.04 87.66 0.62 14.65 16 6 O -0.57 -20.15 12.93 -3.03 -0.04 -20.19 16 7 N -0.71 -19.87 5.15 -417.56 -2.15 -22.02 16 8 C 0.17 5.70 0.80 4.79 0.00 5.71 16 9 C -0.14 -4.17 8.41 71.98 0.61 -3.56 16 10 C -0.13 -4.40 6.11 32.16 0.20 -4.20 16 11 C 0.16 7.35 5.88 87.03 0.51 7.86 16 12 N -0.62 -32.42 3.40 -691.03 -2.35 -34.77 16 13 C -0.24 -13.82 10.27 84.04 0.86 -12.95 16 14 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 15 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 16 N -0.94 -54.93 10.09 21.65 0.22 -54.71 16 17 Si 0.98 45.57 29.55 68.60 2.03 47.59 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 C 0.14 6.20 6.16 86.73 0.53 6.74 16 22 C -0.12 -1.01 6.21 31.65 0.20 -0.82 16 23 C -0.15 -1.90 6.86 30.58 0.21 -1.69 16 24 C 0.51 10.03 8.43 87.90 0.74 10.78 16 25 O -0.59 -17.49 18.03 -3.01 -0.05 -17.55 16 26 N -0.71 -10.03 4.87 -419.98 -2.05 -12.08 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.62 6.55 -2.39 -0.02 0.60 16 30 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 31 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16 32 H 0.11 1.47 7.39 -2.38 -0.02 1.46 16 33 H 0.11 1.64 6.55 -2.39 -0.02 1.62 16 34 H 0.41 9.40 8.48 -92.71 -0.79 8.62 16 35 H 0.06 1.98 6.20 -2.39 -0.01 1.97 16 36 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.10 2.68 8.06 -2.38 -0.02 2.66 16 39 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 40 H 0.07 3.96 5.87 -2.39 -0.01 3.95 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 43 H 0.02 0.78 7.80 -2.39 -0.02 0.76 16 44 H 0.01 0.55 6.68 -2.39 -0.02 0.53 16 45 H 0.10 0.59 7.91 -2.38 -0.02 0.58 16 46 H 0.11 0.75 7.89 -2.39 -0.02 0.73 16 47 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 48 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 49 H 0.41 5.12 8.65 -92.71 -0.80 4.32 16 Total: -1.00 -77.13 380.74 0.82 -76.31 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.62 Total: 20.59 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.83 Total: 16.82 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -6.32 Total: -123.58 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.09 Total: -37.74 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -77.13 0.82 -76.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754685289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.943 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds