Wall clock time and date at job start Fri Apr 10 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 110.88735 * 2 1 4 4 C 1.34774 * 119.99962 * 300.70399 * 3 2 1 5 5 O 1.21277 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99656 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47003 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47372 * 179.97438 * 7 6 4 9 9 C 1.53000 * 110.21490 * 300.70362 * 8 7 6 10 10 C 1.54479 * 110.24780 * 178.77259 * 8 7 6 11 11 C 1.54857 * 101.65782 * 266.39070 * 10 8 7 12 12 C 1.51276 * 104.21206 * 335.19577 * 11 10 8 13 13 O 1.21284 * 124.94307 * 196.29265 * 12 11 10 14 14 N 1.34419 * 110.11547 * 16.26116 * 12 11 10 15 15 C 1.55153 * 111.00633 * 123.88492 * 2 1 3 16 16 C 1.54328 * 102.94392 * 153.57498 * 15 2 1 17 17 N 1.47026 * 107.26914 * 337.80699 * 16 15 2 18 18 C 1.36933 * 125.64516 * 178.98411 * 17 16 15 19 19 H 1.08005 * 120.00115 * 174.78702 * 18 17 16 20 20 C 1.38810 * 120.00527 * 354.79099 * 18 17 16 21 21 N 1.31621 * 119.99467 * 7.04862 * 20 18 17 22 22 Si 1.86797 * 120.00439 * 187.05389 * 20 18 17 23 23 H 1.48495 * 109.47236 * 94.98321 * 22 20 18 24 24 H 1.48505 * 109.47116 * 214.98874 * 22 20 18 25 25 H 1.48503 * 109.46870 * 334.97987 * 22 20 18 26 26 C 1.47421 * 108.70533 * 358.94121 * 17 16 15 27 27 H 1.08996 * 109.47008 * 296.11729 * 1 2 3 28 28 H 1.08998 * 109.47519 * 56.11336 * 1 2 3 29 29 H 1.09004 * 109.47041 * 176.11681 * 1 2 3 30 30 H 0.97001 * 119.99576 * 120.70102 * 3 2 1 31 31 H 1.09005 * 109.47293 * 299.99871 * 6 4 3 32 32 H 1.09001 * 109.47311 * 59.99830 * 6 4 3 33 33 H 1.08997 * 109.47773 * 300.00066 * 7 6 4 34 34 H 1.09001 * 109.47261 * 59.99756 * 7 6 4 35 35 H 1.08996 * 109.47181 * 59.29601 * 9 8 7 36 36 H 1.09000 * 109.47110 * 179.29984 * 9 8 7 37 37 H 1.08998 * 109.46818 * 299.29270 * 9 8 7 38 38 H 1.09004 * 110.96844 * 24.53402 * 10 8 7 39 39 H 1.08995 * 110.97179 * 148.29761 * 10 8 7 40 40 H 1.09008 * 110.46720 * 216.51146 * 11 10 8 41 41 H 1.09009 * 110.48758 * 93.88234 * 11 10 8 42 42 H 0.96999 * 124.34835 * 180.43127 * 14 12 11 43 43 H 1.08999 * 110.72268 * 271.93579 * 15 2 1 44 44 H 1.09000 * 110.71837 * 35.21318 * 15 2 1 45 45 H 1.09000 * 109.88284 * 97.22154 * 16 15 2 46 46 H 1.08999 * 109.88431 * 218.39105 * 16 15 2 47 47 H 0.97001 * 119.99546 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.36679 * 265.29127 * 26 17 16 49 49 H 1.08999 * 110.36782 * 142.96334 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 -1.0036 5 8 1.0182 1.8357 -1.9064 6 6 2.2726 3.6190 -1.0032 7 6 1.7659 4.3582 -2.2432 8 6 2.3105 5.7881 -2.2426 9 6 1.8564 6.5262 -0.9816 10 6 1.8343 6.5420 -3.5040 11 6 3.0164 6.3040 -4.4756 12 6 4.1997 6.0544 -3.5668 13 8 5.3618 6.1015 -3.9106 14 7 3.7758 5.7735 -2.3225 15 6 2.0862 -0.8075 1.2024 16 6 3.4675 -1.2739 0.6963 17 7 3.4271 -1.2433 -0.7731 18 6 4.4639 -1.5673 -1.6068 19 1 4.3095 -1.5941 -2.6754 20 6 5.7134 -1.8616 -1.0786 21 7 5.8693 -1.9654 0.2242 22 14 7.1737 -2.1099 -2.2167 23 1 7.9216 -0.8338 -2.3480 24 1 8.0686 -3.1526 -1.6535 25 1 6.6916 -2.5410 -3.5536 26 6 2.0853 -0.8070 -1.2001 27 1 -0.3633 0.4524 0.9227 28 1 -0.3634 0.5729 -0.8531 29 1 -0.3633 -1.0253 -0.0696 30 1 2.6259 1.6689 0.7223 31 1 1.9319 4.1375 -0.1070 32 1 3.3623 3.5924 -1.0155 33 1 2.1062 3.8400 -3.1396 34 1 0.6763 4.3848 -2.2304 35 1 2.2172 5.9959 -0.1004 36 1 2.2608 7.5384 -0.9876 37 1 0.7675 6.5703 -0.9587 38 1 0.9137 6.1076 -3.8939 39 1 1.7058 7.6046 -3.2982 40 1 3.1877 7.1872 -5.0912 41 1 2.8259 5.4324 -5.1020 42 1 4.3630 5.5855 -1.5737 43 1 2.1923 -0.1693 2.0796 44 1 1.4468 -1.6627 1.4214 45 1 4.2426 -0.5994 1.0600 46 1 3.6651 -2.2891 1.0406 47 1 6.7424 -2.1714 0.5932 48 1 1.4518 -1.6708 -1.4020 49 1 2.1560 -0.1726 -2.0837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754685290.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:52 Heat of formation + Delta-G solvation = -56.682771 kcal Electronic energy + Delta-G solvation = -28764.231745 eV Core-core repulsion = 24919.379297 eV Total energy + Delta-G solvation = -3844.852448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89640 -39.77496 -37.66361 -37.04314 -33.91810 -33.09793 -31.85197 -31.54675 -30.28680 -29.49954 -28.65048 -25.84189 -25.61623 -24.10408 -23.44699 -20.98684 -20.91816 -20.24049 -19.79777 -19.00909 -17.32464 -16.97513 -16.59262 -15.99723 -15.71692 -15.48264 -14.93220 -14.62762 -14.40833 -14.08000 -13.90620 -13.80636 -13.53222 -13.34241 -13.04223 -12.80018 -12.77764 -12.51016 -12.34844 -12.01136 -11.93891 -11.82436 -11.79220 -11.66856 -11.37111 -11.06936 -10.88772 -10.88045 -10.78788 -10.37411 -10.35409 -10.05372 -9.99862 -9.97106 -9.66702 -9.31265 -9.19852 -8.63243 -8.49127 -6.79069 -5.71422 -3.01998 2.50790 2.97879 3.17204 3.42332 3.48628 3.49242 3.49715 4.03902 4.18786 4.40164 4.52571 4.65487 4.70831 4.93756 5.04172 5.05968 5.12306 5.22550 5.26859 5.37323 5.42631 5.44854 5.49612 5.53119 5.61982 5.63546 5.69883 5.72177 5.76557 5.93001 6.01638 6.09378 6.14356 6.15448 6.35255 6.39898 6.53683 6.68207 6.68686 6.81790 6.90288 7.15068 7.53392 7.57753 7.80962 7.93041 8.14423 8.26906 8.61093 9.24273 9.84584 10.50808 11.40982 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.003961 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.874526 B = 7067.761976 C = 8904.723094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 N -0.702 5.702 4 C 0.516 3.484 5 O -0.543 6.543 6 C -0.144 4.144 7 C -0.105 4.105 8 C 0.154 3.846 9 C -0.157 4.157 10 C -0.122 4.122 11 C -0.158 4.158 12 C 0.520 3.480 13 O -0.537 6.537 14 N -0.722 5.722 15 C -0.147 4.147 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.133 3.867 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.397 0.603 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.409 0.591 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.041 0.959 47 H 0.251 0.749 48 H 0.023 0.977 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.055 17.754 1.076 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.069 3.931 3 N -0.352 5.352 4 C 0.302 3.698 5 O -0.421 6.421 6 C -0.184 4.184 7 C -0.144 4.144 8 C 0.068 3.932 9 C -0.215 4.215 10 C -0.160 4.160 11 C -0.198 4.198 12 C 0.306 3.694 13 O -0.413 6.413 14 N -0.377 5.377 15 C -0.185 4.185 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.006 3.994 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.231 0.769 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.248 0.752 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.798 17.444 0.159 21.635 hybrid contribution 1.489 -0.278 0.307 1.546 sum -11.309 17.165 0.466 20.561 Atomic orbital electron populations 1.21998 0.94407 1.02282 1.02140 1.21466 0.92522 0.81037 0.98053 1.45827 1.51406 1.12293 1.25659 1.20413 0.80604 0.87067 0.81686 1.90635 1.37928 1.77872 1.35688 1.21714 1.02716 0.93608 1.00326 1.21727 1.01562 0.92705 0.98410 1.21118 0.79851 0.95742 0.96534 1.22157 1.02329 1.00355 0.96652 1.22728 0.98563 1.01113 0.93579 1.22412 0.93862 1.04957 0.98578 1.20870 0.89800 0.75099 0.83633 1.90773 1.20045 1.52315 1.78209 1.46414 1.07812 1.71647 1.11863 1.23218 1.00467 0.98917 0.95926 1.21155 0.90046 0.99810 0.83792 1.44442 1.08049 1.78685 1.01757 1.19059 0.87478 1.39414 0.89191 0.90621 1.24763 0.97437 1.02125 0.95982 1.69963 1.22411 1.55179 1.09490 0.86160 0.82870 0.77408 0.79779 1.21667 1.21770 1.20635 1.21871 0.87534 0.94774 0.95199 0.93302 0.90723 0.91995 0.76912 0.89047 0.89125 0.90417 0.89740 0.91557 0.91874 0.90695 0.88813 0.89800 0.88184 0.87589 0.75211 0.91836 0.90974 0.93553 0.94082 0.93886 0.95921 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.63 37.16 0.32 -1.91 16 2 C 0.16 2.70 0.82 -129.67 -0.11 2.59 16 3 N -0.70 -10.83 5.18 -45.62 -0.24 -11.06 16 4 C 0.52 7.76 7.20 -10.99 -0.08 7.68 16 5 O -0.54 -9.77 12.77 5.56 0.07 -9.70 16 6 C -0.14 -1.51 5.22 -27.88 -0.15 -1.66 16 7 C -0.11 -1.01 3.69 -26.73 -0.10 -1.10 16 8 C 0.15 1.14 0.87 -130.90 -0.11 1.03 16 9 C -0.16 -0.86 8.45 37.16 0.31 -0.55 16 10 C -0.12 -0.75 6.22 -24.98 -0.16 -0.91 16 11 C -0.16 -1.33 6.86 -26.62 -0.18 -1.51 16 12 C 0.52 6.42 8.43 -10.86 -0.09 6.32 16 13 O -0.54 -9.23 18.03 5.55 0.10 -9.13 16 14 N -0.72 -7.02 4.99 -46.62 -0.23 -7.26 16 15 C -0.15 -2.56 5.98 -24.90 -0.15 -2.71 16 16 C 0.18 4.16 5.37 -3.06 -0.02 4.14 16 17 N -0.60 -15.50 3.39 -170.06 -0.58 -16.08 16 18 C -0.22 -6.38 10.26 -15.06 -0.15 -6.53 16 19 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 20 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 21 N -0.92 -27.04 10.36 55.49 0.57 -26.46 16 22 Si 0.91 22.75 29.56 -169.99 -5.02 17.73 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.13 2.92 6.14 -2.53 -0.02 2.90 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.20 6.15 -51.93 -0.32 0.88 16 29 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.40 5.42 8.50 -40.82 -0.35 5.07 16 31 H 0.09 0.70 6.46 -51.93 -0.34 0.37 16 32 H 0.09 1.00 7.52 -51.93 -0.39 0.61 16 33 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.35 6.45 -51.93 -0.34 0.02 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.48 7.89 -51.93 -0.41 0.07 16 39 H 0.08 0.41 7.91 -51.93 -0.41 -0.01 16 40 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.11 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.41 3.81 8.71 -40.82 -0.36 3.46 16 43 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 44 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 45 H 0.05 1.19 7.30 -51.93 -0.38 0.81 16 46 H 0.04 1.08 7.61 -51.93 -0.40 0.69 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.02 0.51 7.98 -51.93 -0.41 0.09 16 49 H 0.05 1.24 6.59 -51.93 -0.34 0.90 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -35.58 381.54 -8.54 -44.11 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.19 Total: 4.61 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.77 Total: 7.49 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.47 Total: -60.86 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.17 Total: -18.84 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.58 -8.54 -44.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754685290.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.569 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds