Wall clock time and date at job start Fri Apr 10 2020 18:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 110.88735 * 2 1 4 4 C 1.34774 * 119.99962 * 300.70399 * 3 2 1 5 5 O 1.21277 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99656 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47003 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47372 * 179.97438 * 7 6 4 9 9 C 1.53000 * 110.21490 * 300.70362 * 8 7 6 10 10 C 1.54479 * 110.24780 * 178.77259 * 8 7 6 11 11 C 1.54857 * 101.65782 * 266.39070 * 10 8 7 12 12 C 1.51276 * 104.21206 * 335.19577 * 11 10 8 13 13 O 1.21284 * 124.94307 * 196.29265 * 12 11 10 14 14 N 1.34419 * 110.11547 * 16.26116 * 12 11 10 15 15 C 1.55153 * 111.00633 * 123.88492 * 2 1 3 16 16 C 1.54328 * 102.94392 * 153.57498 * 15 2 1 17 17 N 1.47026 * 107.26914 * 337.80699 * 16 15 2 18 18 C 1.36933 * 125.64516 * 178.98411 * 17 16 15 19 19 H 1.08005 * 120.00115 * 174.78702 * 18 17 16 20 20 C 1.38810 * 120.00527 * 354.79099 * 18 17 16 21 21 N 1.31621 * 119.99467 * 7.04862 * 20 18 17 22 22 Si 1.86797 * 120.00439 * 187.05389 * 20 18 17 23 23 H 1.48495 * 109.47236 * 94.98321 * 22 20 18 24 24 H 1.48505 * 109.47116 * 214.98874 * 22 20 18 25 25 H 1.48503 * 109.46870 * 334.97987 * 22 20 18 26 26 C 1.47421 * 108.70533 * 358.94121 * 17 16 15 27 27 H 1.08996 * 109.47008 * 296.11729 * 1 2 3 28 28 H 1.08998 * 109.47519 * 56.11336 * 1 2 3 29 29 H 1.09004 * 109.47041 * 176.11681 * 1 2 3 30 30 H 0.97001 * 119.99576 * 120.70102 * 3 2 1 31 31 H 1.09005 * 109.47293 * 299.99871 * 6 4 3 32 32 H 1.09001 * 109.47311 * 59.99830 * 6 4 3 33 33 H 1.08997 * 109.47773 * 300.00066 * 7 6 4 34 34 H 1.09001 * 109.47261 * 59.99756 * 7 6 4 35 35 H 1.08996 * 109.47181 * 59.29601 * 9 8 7 36 36 H 1.09000 * 109.47110 * 179.29984 * 9 8 7 37 37 H 1.08998 * 109.46818 * 299.29270 * 9 8 7 38 38 H 1.09004 * 110.96844 * 24.53402 * 10 8 7 39 39 H 1.08995 * 110.97179 * 148.29761 * 10 8 7 40 40 H 1.09008 * 110.46720 * 216.51146 * 11 10 8 41 41 H 1.09009 * 110.48758 * 93.88234 * 11 10 8 42 42 H 0.96999 * 124.34835 * 180.43127 * 14 12 11 43 43 H 1.08999 * 110.72268 * 271.93579 * 15 2 1 44 44 H 1.09000 * 110.71837 * 35.21318 * 15 2 1 45 45 H 1.09000 * 109.88284 * 97.22154 * 16 15 2 46 46 H 1.08999 * 109.88431 * 218.39105 * 16 15 2 47 47 H 0.97001 * 119.99546 * 179.97438 * 21 20 18 48 48 H 1.09003 * 110.36679 * 265.29127 * 26 17 16 49 49 H 1.08999 * 110.36782 * 142.96334 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 -1.0036 5 8 1.0182 1.8357 -1.9064 6 6 2.2726 3.6190 -1.0032 7 6 1.7659 4.3582 -2.2432 8 6 2.3105 5.7881 -2.2426 9 6 1.8564 6.5262 -0.9816 10 6 1.8343 6.5420 -3.5040 11 6 3.0164 6.3040 -4.4756 12 6 4.1997 6.0544 -3.5668 13 8 5.3618 6.1015 -3.9106 14 7 3.7758 5.7735 -2.3225 15 6 2.0862 -0.8075 1.2024 16 6 3.4675 -1.2739 0.6963 17 7 3.4271 -1.2433 -0.7731 18 6 4.4639 -1.5673 -1.6068 19 1 4.3095 -1.5941 -2.6754 20 6 5.7134 -1.8616 -1.0786 21 7 5.8693 -1.9654 0.2242 22 14 7.1737 -2.1099 -2.2167 23 1 7.9216 -0.8338 -2.3480 24 1 8.0686 -3.1526 -1.6535 25 1 6.6916 -2.5410 -3.5536 26 6 2.0853 -0.8070 -1.2001 27 1 -0.3633 0.4524 0.9227 28 1 -0.3634 0.5729 -0.8531 29 1 -0.3633 -1.0253 -0.0696 30 1 2.6259 1.6689 0.7223 31 1 1.9319 4.1375 -0.1070 32 1 3.3623 3.5924 -1.0155 33 1 2.1062 3.8400 -3.1396 34 1 0.6763 4.3848 -2.2304 35 1 2.2172 5.9959 -0.1004 36 1 2.2608 7.5384 -0.9876 37 1 0.7675 6.5703 -0.9587 38 1 0.9137 6.1076 -3.8939 39 1 1.7058 7.6046 -3.2982 40 1 3.1877 7.1872 -5.0912 41 1 2.8259 5.4324 -5.1020 42 1 4.3630 5.5855 -1.5737 43 1 2.1923 -0.1693 2.0796 44 1 1.4468 -1.6627 1.4214 45 1 4.2426 -0.5994 1.0600 46 1 3.6651 -2.2891 1.0406 47 1 6.7424 -2.1714 0.5932 48 1 1.4518 -1.6708 -1.4020 49 1 2.1560 -0.1726 -2.0837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754685290.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:51 Heat of formation + Delta-G solvation = -83.049613 kcal Electronic energy + Delta-G solvation = -28765.375097 eV Core-core repulsion = 24919.379297 eV Total energy + Delta-G solvation = -3845.995801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73040 -41.06025 -39.01415 -38.19387 -35.65353 -34.07508 -33.48349 -32.25388 -31.76254 -30.57172 -30.11317 -27.53559 -26.51767 -25.45238 -24.62073 -22.34173 -21.81995 -21.67824 -20.72551 -20.38450 -18.98378 -18.17703 -17.70404 -17.14106 -16.83067 -16.70030 -16.57931 -15.91681 -15.62685 -15.52065 -15.02972 -15.00415 -14.65993 -14.37260 -14.15284 -13.92221 -13.78258 -13.54698 -13.46396 -13.36101 -13.16115 -13.09128 -12.93592 -12.85746 -12.76052 -12.41395 -12.14720 -12.10918 -12.05657 -11.99290 -11.75985 -11.72723 -11.53650 -11.44548 -10.95473 -10.73141 -10.50798 -10.12676 -9.90255 -8.89110 -7.91407 -5.23228 1.39090 1.41016 1.49116 1.56281 1.79803 2.34087 2.42034 2.43805 3.26990 3.35898 3.55696 3.57164 3.67858 3.77332 3.98139 4.02324 4.05296 4.17759 4.20739 4.31472 4.41581 4.54939 4.62338 4.63567 4.70719 4.77088 4.87509 4.88708 4.93087 4.94159 4.99705 5.03261 5.04465 5.09646 5.16422 5.19607 5.26028 5.38029 5.41059 5.42906 5.63632 5.70959 5.80488 5.91310 6.05887 6.16743 6.73726 7.08293 7.24309 7.42844 7.74326 8.38528 9.18762 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.003961 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.874526 B = 7067.761976 C = 8904.723094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.167 3.833 3 N -0.703 5.703 4 C 0.508 3.492 5 O -0.575 6.575 6 C -0.135 4.135 7 C -0.100 4.100 8 C 0.156 3.844 9 C -0.153 4.153 10 C -0.113 4.113 11 C -0.156 4.156 12 C 0.505 3.495 13 O -0.598 6.598 14 N -0.716 5.716 15 C -0.128 4.128 16 C 0.184 3.816 17 N -0.621 5.621 18 C -0.243 4.243 19 H 0.066 0.934 20 C -0.053 4.053 21 N -0.942 5.942 22 Si 0.967 3.033 23 H -0.290 1.290 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.129 3.871 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.407 0.593 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.409 0.591 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.019 0.981 46 H 0.004 0.996 47 H 0.248 0.752 48 H 0.020 0.980 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 19.624 2.323 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.079 3.921 3 N -0.354 5.354 4 C 0.296 3.704 5 O -0.455 6.455 6 C -0.175 4.175 7 C -0.139 4.139 8 C 0.070 3.930 9 C -0.211 4.211 10 C -0.150 4.150 11 C -0.196 4.196 12 C 0.293 3.707 13 O -0.480 6.480 14 N -0.369 5.369 15 C -0.166 4.166 16 C 0.059 3.941 17 N -0.347 5.347 18 C -0.373 4.373 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.590 5.590 22 Si 0.796 3.204 23 H -0.217 1.217 24 H -0.214 1.214 25 H -0.200 1.200 26 C 0.003 3.997 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.242 0.758 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.247 0.753 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.023 0.977 47 H 0.057 0.943 48 H 0.038 0.962 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.026 19.325 1.440 24.521 hybrid contribution 2.146 -0.926 -0.109 2.339 sum -12.880 18.399 1.331 22.499 Atomic orbital electron populations 1.21908 0.91815 1.02873 1.03135 1.21309 0.94183 0.81471 0.95099 1.45859 1.51631 1.11528 1.26349 1.21202 0.79905 0.88494 0.80762 1.90623 1.39453 1.78781 1.36689 1.21751 1.02032 0.91107 1.02601 1.21692 1.02215 0.93511 0.96484 1.21281 0.78102 0.94889 0.98726 1.22159 1.03546 1.00260 0.95136 1.22812 0.97927 1.02442 0.91847 1.22454 0.93104 1.05434 0.98579 1.21611 0.89896 0.74294 0.84885 1.90727 1.22630 1.55215 1.79410 1.46572 1.09158 1.70023 1.11155 1.23087 0.96606 1.00070 0.96885 1.20959 0.93196 0.97271 0.82670 1.44691 1.08778 1.78619 1.02650 1.19290 0.88930 1.39614 0.89426 0.91610 1.25456 0.99550 1.02322 0.97401 1.70144 1.22536 1.55703 1.10645 0.85233 0.79743 0.77080 0.78364 1.21738 1.21389 1.19971 1.21993 0.86147 0.94938 0.96605 0.90287 0.91967 0.91357 0.75759 0.85189 0.89840 0.93591 0.88576 0.91139 0.91253 0.88775 0.87179 0.87532 0.86888 0.87817 0.75266 0.88317 0.89308 0.96233 0.97745 0.94257 0.96220 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.63 71.98 0.62 -3.13 16 2 C 0.17 5.51 0.82 5.00 0.00 5.52 16 3 N -0.70 -20.53 5.18 -416.65 -2.16 -22.68 16 4 C 0.51 14.66 7.20 87.66 0.63 15.29 16 5 O -0.58 -20.46 12.77 -3.02 -0.04 -20.50 16 6 C -0.14 -2.58 5.22 29.85 0.16 -2.43 16 7 C -0.10 -1.74 3.69 30.59 0.11 -1.63 16 8 C 0.16 1.93 0.87 4.06 0.00 1.94 16 9 C -0.15 -1.08 8.45 71.98 0.61 -0.47 16 10 C -0.11 -1.07 6.22 31.73 0.20 -0.87 16 11 C -0.16 -2.47 6.86 30.67 0.21 -2.26 16 12 C 0.51 12.62 8.43 87.90 0.74 13.36 16 13 O -0.60 -21.57 18.03 -3.04 -0.05 -21.62 16 14 N -0.72 -13.38 4.99 -419.99 -2.10 -15.47 16 15 C -0.13 -4.22 5.98 31.78 0.19 -4.03 16 16 C 0.18 8.75 5.37 86.73 0.47 9.22 16 17 N -0.62 -32.73 3.39 -691.96 -2.35 -35.08 16 18 C -0.24 -14.35 10.26 84.03 0.86 -13.48 16 19 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 20 C -0.05 -3.13 5.48 84.86 0.46 -2.66 16 21 N -0.94 -56.50 10.36 21.65 0.22 -56.27 16 22 Si 0.97 47.73 29.56 68.60 2.03 49.75 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 26 C 0.13 5.75 6.14 86.86 0.53 6.28 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.88 6.15 -2.39 -0.01 1.86 16 29 H 0.07 1.75 8.07 -2.38 -0.02 1.73 16 30 H 0.41 10.23 8.50 -92.71 -0.79 9.44 16 31 H 0.13 1.49 6.46 -2.38 -0.02 1.48 16 32 H 0.08 1.76 7.52 -2.39 -0.02 1.74 16 33 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.07 0.46 6.45 -2.39 -0.02 0.44 16 36 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.11 0.75 7.89 -2.38 -0.02 0.73 16 39 H 0.11 0.59 7.91 -2.39 -0.02 0.58 16 40 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.41 7.42 8.71 -92.71 -0.81 6.62 16 43 H 0.10 2.60 8.06 -2.39 -0.02 2.58 16 44 H 0.09 2.67 8.04 -2.39 -0.02 2.65 16 45 H 0.02 1.02 7.30 -2.39 -0.02 1.00 16 46 H 0.00 0.23 7.61 -2.39 -0.02 0.22 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.02 0.89 7.98 -2.39 -0.02 0.87 16 49 H 0.03 1.33 6.59 -2.39 -0.02 1.32 16 Total: -1.00 -82.25 381.54 0.73 -81.53 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.63 Total: 19.70 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 5.80 Total: 20.65 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -6.38 Total: -129.51 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.09 Total: -42.12 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -82.25 0.73 -81.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754685290.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.524 kcal (2) G-P(sol) polarization free energy of solvation -82.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds