Wall clock time and date at job start Fri Apr 10 2020 18:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 N 1.46497 * 109.46982 * 179.97438 * 3 2 1 5 5 C 1.36944 * 119.99766 * 92.95870 * 4 3 2 6 6 H 1.08000 * 119.99962 * 34.40594 * 5 4 3 7 7 C 1.38812 * 119.99810 * 214.68559 * 5 4 3 8 8 N 1.31621 * 119.99712 * 23.46279 * 7 5 4 9 9 Si 1.86794 * 119.99887 * 203.45624 * 7 5 4 10 10 H 1.48507 * 109.47032 * 90.00612 * 9 7 5 11 11 H 1.48500 * 109.46961 * 209.99844 * 9 7 5 12 12 H 1.48495 * 109.47430 * 330.00042 * 9 7 5 13 13 C 1.46497 * 120.00588 * 272.94925 * 4 3 2 14 14 N 1.46500 * 109.47488 * 270.00853 * 13 4 3 15 15 C 1.33859 * 124.19782 * 90.02172 * 14 13 4 16 16 O 1.21534 * 123.78898 * 0.03461 * 15 14 13 17 17 N 1.34672 * 112.41833 * 179.97438 * 15 14 13 18 18 C 1.46853 * 106.42749 * 359.97438 * 17 15 14 19 19 C 1.52475 * 110.48824 * 241.45278 * 18 17 15 20 20 C 1.53078 * 109.58260 * 178.66186 * 19 18 17 21 21 C 1.53007 * 109.41582 * 59.15173 * 20 19 18 22 22 C 1.53003 * 109.45745 * 179.51771 * 21 20 19 23 23 C 1.53000 * 109.51185 * 299.52461 * 21 20 19 24 24 C 1.52477 * 110.48510 * 118.54719 * 18 17 15 25 25 C 1.34915 * 124.19025 * 269.71923 * 14 13 4 26 26 O 1.21240 * 127.25583 * 359.97438 * 25 14 13 27 27 H 1.08999 * 109.47116 * 59.99786 * 1 2 3 28 28 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46939 * 299.99840 * 1 2 3 30 30 H 1.09000 * 109.47124 * 240.00431 * 2 1 3 31 31 H 1.08999 * 109.47116 * 120.00214 * 2 1 3 32 32 H 1.09000 * 109.46756 * 60.00206 * 3 2 1 33 33 H 1.08999 * 109.47287 * 300.00109 * 3 2 1 34 34 H 0.97004 * 120.00046 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46600 * 30.00762 * 13 4 3 36 36 H 1.09004 * 109.47503 * 149.99910 * 13 4 3 37 37 H 0.97001 * 126.78448 * 179.97438 * 17 15 14 38 38 H 1.09001 * 109.45105 * 298.69954 * 19 18 17 39 39 H 1.09004 * 109.44709 * 58.63008 * 19 18 17 40 40 H 1.09005 * 109.48122 * 299.17090 * 20 19 18 41 41 H 1.08996 * 109.48068 * 179.13734 * 20 19 18 42 42 H 1.09004 * 109.46934 * 59.54025 * 21 20 19 43 43 H 1.09001 * 109.47445 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47326 * 300.03975 * 22 21 20 45 45 H 1.09004 * 109.47155 * 60.03707 * 22 21 20 46 46 H 1.09000 * 109.48286 * 300.48346 * 23 21 20 47 47 H 1.08999 * 109.48098 * 180.45148 * 23 21 20 48 48 H 1.08995 * 109.45114 * 301.36394 * 24 18 17 49 49 H 1.08997 * 109.45175 * 61.30186 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.5035 -1.1835 6 1 3.7922 2.0752 -2.0088 7 6 5.3933 0.8257 -1.3249 8 7 5.6592 -0.2101 -0.5577 9 14 6.6349 1.3838 -2.6041 10 1 7.5537 2.3817 -1.9998 11 1 7.4172 0.2138 -3.0779 12 1 5.9209 1.9993 -3.7515 13 6 4.2371 1.3774 1.2679 14 7 4.4810 2.7350 1.7614 15 6 3.6474 3.4036 2.5676 16 8 2.5961 2.9520 2.9773 17 7 4.1053 4.6322 2.8749 18 6 5.3932 4.7801 2.1849 19 6 6.5174 4.9921 3.1928 20 6 7.8531 5.1102 2.4544 21 6 7.7922 6.2867 1.4780 22 6 9.1309 6.4130 0.7481 23 6 6.6763 6.0478 0.4589 24 6 5.3358 5.9334 1.1892 25 6 5.5764 3.4643 1.4642 26 8 6.5106 3.1342 0.7654 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 6.4998 -0.6840 -0.6567 35 1 3.6477 0.8251 1.9999 36 1 5.1896 0.8709 1.1117 37 1 3.6703 5.2896 3.4402 38 1 6.3320 5.9066 3.7563 39 1 6.5550 4.1452 3.8780 40 1 8.0462 4.1899 1.9030 41 1 8.6534 5.2770 3.1752 42 1 7.5906 7.2057 2.0286 43 1 9.0880 7.2514 0.0528 44 1 9.9260 6.5832 1.4740 45 1 9.3325 5.4943 0.1972 46 1 6.8733 5.1246 -0.0861 47 1 6.6387 6.8824 -0.2412 48 1 4.5425 5.7486 0.4650 49 1 5.1319 6.8626 1.7214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048324303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:18 Heat of formation + Delta-G solvation = -45.587400 kcal Electronic energy + Delta-G solvation = -30450.302231 eV Core-core repulsion = 26605.930914 eV Total energy + Delta-G solvation = -3844.371317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02055 -38.60860 -37.29420 -36.08040 -35.42244 -33.58716 -32.64645 -30.92811 -30.90279 -30.36087 -26.48936 -25.83542 -25.53897 -22.94686 -22.82941 -22.29240 -21.07206 -20.66727 -19.87110 -18.89778 -17.49864 -16.95139 -16.10566 -15.84167 -14.98953 -14.95905 -14.54643 -14.42184 -14.40204 -14.28511 -14.05716 -13.84221 -13.45938 -13.19490 -12.74357 -12.70469 -12.63965 -12.54836 -12.26687 -11.75892 -11.72974 -11.61432 -11.37947 -11.11558 -11.01298 -10.78275 -10.72527 -10.62364 -10.51457 -10.38419 -10.23324 -10.16476 -10.04277 -10.03013 -9.66331 -9.13222 -9.05625 -8.80615 -8.51971 -6.86882 -5.93895 -3.44223 2.39026 3.00235 3.41126 3.47186 3.53932 3.69706 3.81397 4.40986 4.51013 4.66077 4.68633 4.91945 5.08524 5.15990 5.32983 5.39316 5.44574 5.44694 5.49871 5.61067 5.74065 5.81119 5.82544 5.85012 5.88559 5.94023 5.98127 6.00829 6.16079 6.21759 6.27184 6.30926 6.37174 6.38019 6.42572 6.57113 6.62103 6.66808 6.71799 6.83947 7.07812 7.20041 7.21429 7.33926 7.77198 7.93667 8.26138 8.38856 8.84514 9.04380 9.69032 10.22987 11.11981 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.006103 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.571816 B = 4586.458156 C = 6223.006208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.138 3.862 4 N -0.563 5.563 5 C -0.278 4.278 6 H 0.063 0.937 7 C 0.037 3.963 8 N -0.883 5.883 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.293 1.293 12 H -0.281 1.281 13 C 0.343 3.657 14 N -0.575 5.575 15 C 0.697 3.303 16 O -0.560 6.560 17 N -0.735 5.735 18 C 0.116 3.884 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.086 4.086 22 C -0.147 4.147 23 C -0.124 4.124 24 C -0.106 4.106 25 C 0.531 3.469 26 O -0.446 6.446 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.259 0.741 35 H 0.063 0.937 36 H 0.134 0.866 37 H 0.426 0.574 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 12.290 6.846 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.012 3.988 4 N -0.281 5.281 5 C -0.407 4.407 6 H 0.080 0.920 7 C -0.165 4.165 8 N -0.524 5.524 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.219 1.219 12 H -0.206 1.206 13 C 0.137 3.863 14 N -0.326 5.326 15 C 0.398 3.602 16 O -0.435 6.435 17 N -0.399 5.399 18 C 0.025 3.975 19 C -0.145 4.145 20 C -0.161 4.161 21 C -0.104 4.104 22 C -0.204 4.204 23 C -0.161 4.161 24 C -0.144 4.144 25 C 0.315 3.685 26 O -0.314 6.314 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.151 0.849 37 H 0.269 0.731 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.174 11.524 6.550 13.432 hybrid contribution 0.300 0.619 -0.334 0.765 sum 2.475 12.142 6.216 13.863 Atomic orbital electron populations 1.21737 0.97582 1.00330 1.00796 1.21989 0.93323 1.00190 1.01999 1.21135 0.84515 0.94024 0.99083 1.44332 1.00216 1.81207 1.02335 1.19018 1.03864 1.25939 0.91841 0.91966 1.25000 0.99859 0.93842 0.97828 1.69883 1.24091 1.16824 1.41623 0.86394 0.81957 0.78345 0.80690 1.19853 1.21938 1.20629 1.21745 1.01474 0.77611 0.85507 1.49050 1.19487 1.20084 1.43943 1.16441 0.83607 0.81097 0.79048 1.90903 1.22594 1.71407 1.58645 1.45725 1.22750 1.17234 1.54152 1.21137 0.85447 0.96925 0.94036 1.21573 0.93591 1.02655 0.96700 1.21737 0.95601 1.00501 0.98241 1.21068 0.95213 0.97923 0.96206 1.21808 0.96456 1.02014 1.00132 1.21736 0.92823 1.03711 0.97876 1.21549 0.99305 0.96139 0.97449 1.20427 0.82696 0.85286 0.80091 1.90736 1.31943 1.74608 1.34145 0.93492 0.93803 0.93471 0.91855 0.93001 0.93555 0.93882 0.93136 0.91907 0.84865 0.73116 0.90725 0.91198 0.89536 0.91662 0.91693 0.92939 0.92986 0.92202 0.89416 0.91639 0.90913 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.14 -2.76 6.26 -26.73 -0.17 -2.93 16 3 C 0.14 3.06 5.67 -4.04 -0.02 3.04 16 4 N -0.56 -13.94 2.69 -176.95 -0.48 -14.42 16 5 C -0.28 -7.48 9.46 -15.06 -0.14 -7.62 16 6 H 0.06 1.71 7.93 -52.49 -0.42 1.29 16 7 C 0.04 0.99 4.93 -17.43 -0.09 0.91 16 8 N -0.88 -24.63 11.40 55.49 0.63 -24.00 16 9 Si 0.90 22.01 29.61 -169.99 -5.03 16.98 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.34 8.20 5.88 -63.75 -0.37 7.82 16 14 N -0.57 -12.07 2.85 -124.31 -0.35 -12.42 16 15 C 0.70 13.45 8.63 -87.83 -0.76 12.69 16 16 O -0.56 -12.22 16.52 5.34 0.09 -12.13 16 17 N -0.74 -10.63 5.88 -53.87 -0.32 -10.95 16 18 C 0.12 1.68 1.01 -133.10 -0.13 1.55 16 19 C -0.11 -1.27 5.09 -26.96 -0.14 -1.41 16 20 C -0.12 -1.49 4.95 -26.69 -0.13 -1.62 16 21 C -0.09 -0.96 2.71 -90.61 -0.25 -1.21 16 22 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 23 C -0.12 -1.62 4.95 -26.69 -0.13 -1.76 16 24 C -0.11 -1.37 5.11 -26.95 -0.14 -1.51 16 25 C 0.53 10.39 6.52 -10.71 -0.07 10.32 16 26 O -0.45 -9.91 13.84 5.59 0.08 -9.83 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 1.04 7.11 -51.93 -0.37 0.67 16 33 H 0.04 0.94 8.02 -51.93 -0.42 0.53 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.06 1.49 7.79 -51.93 -0.40 1.09 16 36 H 0.13 3.54 5.25 -51.93 -0.27 3.27 16 37 H 0.43 4.80 8.96 -40.82 -0.37 4.43 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.32 6.09 -51.93 -0.32 1.00 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.48 6.13 -51.93 -0.32 1.16 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -30.15 382.11 -9.81 -39.96 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.36 Total: 6.06 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: -1.83 Total: 14.99 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.51 Total: -61.78 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.17 Total: -21.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.15 -9.81 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048324303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.623 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds