Wall clock time and date at job start Fri Apr 10 2020 18:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 N 1.46497 * 109.46982 * 179.97438 * 3 2 1 5 5 C 1.36944 * 119.99766 * 92.95870 * 4 3 2 6 6 H 1.08000 * 119.99962 * 34.40594 * 5 4 3 7 7 C 1.38812 * 119.99810 * 214.68559 * 5 4 3 8 8 N 1.31621 * 119.99712 * 23.46279 * 7 5 4 9 9 Si 1.86794 * 119.99887 * 203.45624 * 7 5 4 10 10 H 1.48507 * 109.47032 * 90.00612 * 9 7 5 11 11 H 1.48500 * 109.46961 * 209.99844 * 9 7 5 12 12 H 1.48495 * 109.47430 * 330.00042 * 9 7 5 13 13 C 1.46497 * 120.00588 * 272.94925 * 4 3 2 14 14 N 1.46500 * 109.47488 * 270.00853 * 13 4 3 15 15 C 1.33859 * 124.19782 * 90.02172 * 14 13 4 16 16 O 1.21534 * 123.78898 * 0.03461 * 15 14 13 17 17 N 1.34672 * 112.41833 * 179.97438 * 15 14 13 18 18 C 1.46853 * 106.42749 * 359.97438 * 17 15 14 19 19 C 1.52475 * 110.48824 * 241.45278 * 18 17 15 20 20 C 1.53078 * 109.58260 * 178.66186 * 19 18 17 21 21 C 1.53007 * 109.41582 * 59.15173 * 20 19 18 22 22 C 1.53003 * 109.45745 * 179.51771 * 21 20 19 23 23 C 1.53000 * 109.51185 * 299.52461 * 21 20 19 24 24 C 1.52477 * 110.48510 * 118.54719 * 18 17 15 25 25 C 1.34915 * 124.19025 * 269.71923 * 14 13 4 26 26 O 1.21240 * 127.25583 * 359.97438 * 25 14 13 27 27 H 1.08999 * 109.47116 * 59.99786 * 1 2 3 28 28 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46939 * 299.99840 * 1 2 3 30 30 H 1.09000 * 109.47124 * 240.00431 * 2 1 3 31 31 H 1.08999 * 109.47116 * 120.00214 * 2 1 3 32 32 H 1.09000 * 109.46756 * 60.00206 * 3 2 1 33 33 H 1.08999 * 109.47287 * 300.00109 * 3 2 1 34 34 H 0.97004 * 120.00046 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46600 * 30.00762 * 13 4 3 36 36 H 1.09004 * 109.47503 * 149.99910 * 13 4 3 37 37 H 0.97001 * 126.78448 * 179.97438 * 17 15 14 38 38 H 1.09001 * 109.45105 * 298.69954 * 19 18 17 39 39 H 1.09004 * 109.44709 * 58.63008 * 19 18 17 40 40 H 1.09005 * 109.48122 * 299.17090 * 20 19 18 41 41 H 1.08996 * 109.48068 * 179.13734 * 20 19 18 42 42 H 1.09004 * 109.46934 * 59.54025 * 21 20 19 43 43 H 1.09001 * 109.47445 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47326 * 300.03975 * 22 21 20 45 45 H 1.09004 * 109.47155 * 60.03707 * 22 21 20 46 46 H 1.09000 * 109.48286 * 300.48346 * 23 21 20 47 47 H 1.08999 * 109.48098 * 180.45148 * 23 21 20 48 48 H 1.08995 * 109.45114 * 301.36394 * 24 18 17 49 49 H 1.08997 * 109.45175 * 61.30186 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.5035 -1.1835 6 1 3.7922 2.0752 -2.0088 7 6 5.3933 0.8257 -1.3249 8 7 5.6592 -0.2101 -0.5577 9 14 6.6349 1.3838 -2.6041 10 1 7.5537 2.3817 -1.9998 11 1 7.4172 0.2138 -3.0779 12 1 5.9209 1.9993 -3.7515 13 6 4.2371 1.3774 1.2679 14 7 4.4810 2.7350 1.7614 15 6 3.6474 3.4036 2.5676 16 8 2.5961 2.9520 2.9773 17 7 4.1053 4.6322 2.8749 18 6 5.3932 4.7801 2.1849 19 6 6.5174 4.9921 3.1928 20 6 7.8531 5.1102 2.4544 21 6 7.7922 6.2867 1.4780 22 6 9.1309 6.4130 0.7481 23 6 6.6763 6.0478 0.4589 24 6 5.3358 5.9334 1.1892 25 6 5.5764 3.4643 1.4642 26 8 6.5106 3.1342 0.7654 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 6.4998 -0.6840 -0.6567 35 1 3.6477 0.8251 1.9999 36 1 5.1896 0.8709 1.1117 37 1 3.6703 5.2896 3.4402 38 1 6.3320 5.9066 3.7563 39 1 6.5550 4.1452 3.8780 40 1 8.0462 4.1899 1.9030 41 1 8.6534 5.2770 3.1752 42 1 7.5906 7.2057 2.0286 43 1 9.0880 7.2514 0.0528 44 1 9.9260 6.5832 1.4740 45 1 9.3325 5.4943 0.1972 46 1 6.8733 5.1246 -0.0861 47 1 6.6387 6.8824 -0.2412 48 1 4.5425 5.7486 0.4650 49 1 5.1319 6.8626 1.7214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048324303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:17 Heat of formation + Delta-G solvation = -63.540687 kcal Electronic energy + Delta-G solvation = -30451.080744 eV Core-core repulsion = 26605.930914 eV Total energy + Delta-G solvation = -3845.149830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.47903 -39.97222 -38.80039 -37.81835 -36.92225 -35.10019 -34.49747 -32.40546 -31.90952 -31.85767 -28.16763 -27.41558 -27.04970 -24.41885 -23.98809 -23.83253 -22.57417 -21.94483 -21.45287 -20.19377 -19.16944 -18.68737 -17.62691 -17.26313 -16.90353 -16.44322 -16.18662 -15.96227 -15.81351 -15.69340 -15.46062 -15.21981 -14.99982 -14.59430 -14.26228 -14.14760 -13.75897 -13.68767 -13.46670 -13.30024 -13.26427 -12.84455 -12.76230 -12.65093 -12.62613 -12.45996 -12.36404 -12.11526 -12.06917 -11.89704 -11.86987 -11.49364 -11.43246 -11.34085 -11.22439 -10.71428 -10.59865 -10.47852 -10.25912 -8.88477 -8.03109 -5.55978 0.86498 1.35614 1.47467 1.49023 1.57577 2.16745 2.36948 2.47498 3.06540 3.24521 3.57407 3.58329 3.62745 3.95428 4.11303 4.16251 4.19731 4.23976 4.37368 4.41074 4.50875 4.53953 4.60522 4.63724 4.77140 4.78611 4.82612 4.88729 4.93738 4.99396 5.00997 5.01432 5.08105 5.09463 5.21263 5.28189 5.30249 5.31166 5.38465 5.39581 5.41125 5.52865 5.65021 5.67986 5.97032 6.27305 6.42862 6.76241 6.98484 7.32632 7.65335 8.18284 9.00708 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.006103 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.571816 B = 4586.458156 C = 6223.006208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.142 3.858 4 N -0.578 5.578 5 C -0.281 4.281 6 H 0.053 0.947 7 C 0.002 3.998 8 N -0.905 5.905 9 Si 0.943 3.057 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.272 1.272 13 C 0.357 3.643 14 N -0.589 5.589 15 C 0.694 3.306 16 O -0.588 6.588 17 N -0.705 5.705 18 C 0.129 3.871 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.080 4.080 22 C -0.146 4.146 23 C -0.124 4.124 24 C -0.101 4.101 25 C 0.515 3.485 26 O -0.479 6.479 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.255 0.745 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.448 0.552 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.040 0.960 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 15.573 8.224 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.017 3.983 4 N -0.298 5.298 5 C -0.410 4.410 6 H 0.070 0.930 7 C -0.197 4.197 8 N -0.547 5.547 9 Si 0.771 3.229 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.197 1.197 13 C 0.150 3.850 14 N -0.339 5.339 15 C 0.395 3.605 16 O -0.466 6.466 17 N -0.370 5.370 18 C 0.038 3.962 19 C -0.139 4.139 20 C -0.161 4.161 21 C -0.098 4.098 22 C -0.204 4.204 23 C -0.162 4.162 24 C -0.140 4.140 25 C 0.302 3.698 26 O -0.349 6.349 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.294 0.706 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.101 0.899 48 H 0.069 0.931 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.904 14.871 7.956 16.973 hybrid contribution 0.404 -0.377 -0.733 0.918 sum 2.307 14.494 7.223 16.358 Atomic orbital electron populations 1.21642 0.94072 1.01903 1.01764 1.21846 0.96333 0.98370 1.00073 1.21142 0.83175 0.95108 0.98850 1.44407 1.01188 1.82268 1.01913 1.19054 1.04309 1.25262 0.92353 0.92960 1.25471 1.00931 0.93962 0.99357 1.69982 1.24134 1.17694 1.42908 0.85670 0.80215 0.77648 0.79343 1.21068 1.21673 1.19687 1.21148 0.99766 0.78899 0.85230 1.48664 1.20831 1.19739 1.44697 1.16407 0.83021 0.82296 0.78783 1.90883 1.23658 1.72372 1.59654 1.45489 1.22410 1.15642 1.53428 1.21221 0.86169 0.94156 0.94646 1.21643 0.91974 1.04555 0.95761 1.21727 0.96522 0.99181 0.98664 1.21086 0.94378 0.98783 0.95557 1.21805 0.96994 1.00982 1.00582 1.21720 0.93795 1.02058 0.98619 1.21603 0.98530 0.96995 0.96841 1.21337 0.81576 0.87028 0.79845 1.90724 1.32923 1.75711 1.35573 0.92352 0.91963 0.92618 0.94187 0.94448 0.93735 0.93856 0.93535 0.92576 0.87724 0.70552 0.86159 0.91939 0.93705 0.89190 0.88036 0.91751 0.91247 0.95178 0.94118 0.89865 0.93111 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.91 71.98 0.71 -3.61 16 2 C -0.13 -5.26 6.26 30.60 0.19 -5.07 16 3 C 0.14 6.45 5.67 86.38 0.49 6.94 16 4 N -0.58 -29.76 2.69 -713.74 -1.92 -31.68 16 5 C -0.28 -15.67 9.46 84.03 0.79 -14.88 16 6 H 0.05 2.98 7.93 -2.91 -0.02 2.95 16 7 C 0.00 0.14 4.93 84.86 0.42 0.56 16 8 N -0.90 -52.73 11.40 21.65 0.25 -52.49 16 9 Si 0.94 46.86 29.61 68.60 2.03 48.89 16 10 H -0.28 -14.54 7.11 99.48 0.71 -13.84 16 11 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 13 C 0.36 17.91 5.88 170.96 1.00 18.91 16 14 N -0.59 -25.39 2.85 -784.32 -2.23 -27.63 16 15 C 0.69 26.50 8.63 179.37 1.55 28.05 16 16 O -0.59 -25.53 16.52 -3.82 -0.06 -25.59 16 17 N -0.70 -18.63 5.88 -442.71 -2.60 -21.23 16 18 C 0.13 3.48 1.01 2.58 0.00 3.48 16 19 C -0.10 -2.06 5.09 30.45 0.16 -1.91 16 20 C -0.12 -2.70 4.95 30.62 0.15 -2.55 16 21 C -0.08 -1.53 2.71 -10.79 -0.03 -1.56 16 22 C -0.15 -2.83 9.19 71.98 0.66 -2.17 16 23 C -0.12 -3.03 4.95 30.62 0.15 -2.88 16 24 C -0.10 -2.34 5.11 30.45 0.16 -2.18 16 25 C 0.52 20.61 6.52 87.77 0.57 21.18 16 26 O -0.48 -22.40 13.84 -2.91 -0.04 -22.44 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 2.02 7.11 -2.39 -0.02 2.00 16 33 H 0.04 1.93 8.02 -2.39 -0.02 1.91 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.06 2.81 7.79 -2.39 -0.02 2.79 16 36 H 0.11 5.91 5.25 -2.38 -0.01 5.90 16 37 H 0.45 8.27 8.96 -92.71 -0.83 7.43 16 38 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.04 1.38 6.09 -2.38 -0.01 1.37 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.04 1.40 6.13 -2.39 -0.01 1.38 16 47 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -70.64 382.11 2.51 -68.13 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.11 Total: 21.72 kcal Atomic # 6 Polarization: 35.34 SS G_CDS: 6.98 Total: 42.32 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -6.51 Total: -133.02 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -0.10 Total: -48.03 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -70.64 2.51 -68.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048324303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.590 kcal (2) G-P(sol) polarization free energy of solvation -70.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds