Wall clock time and date at job start Fri Apr 10 2020 18:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47042 * 66.46127 * 3 2 1 5 5 C 1.34777 * 120.00361 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99561 * 0.02562 * 5 4 3 7 7 C 1.50692 * 120.00307 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.47003 * 180.02562 * 7 5 4 9 9 N 1.46905 * 109.46824 * 185.11136 * 8 7 5 10 10 C 1.46901 * 110.99769 * 160.38973 * 9 8 7 11 11 C 1.50703 * 109.47083 * 288.38728 * 10 9 8 12 12 H 1.07996 * 120.00298 * 356.22988 * 11 10 9 13 13 C 1.37877 * 119.99859 * 176.22567 * 11 10 9 14 14 N 1.31516 * 120.00338 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99900 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47130 * 90.00102 * 15 13 11 17 17 H 1.48500 * 109.47053 * 210.00113 * 15 13 11 18 18 H 1.48502 * 109.46722 * 329.99974 * 15 13 11 19 19 C 1.46896 * 111.00200 * 284.34197 * 9 8 7 20 20 C 1.52997 * 109.47094 * 170.00038 * 19 9 8 21 21 N 1.46905 * 109.47267 * 179.97438 * 20 19 9 22 22 C 1.47017 * 110.99386 * 46.31655 * 21 20 19 23 23 C 1.53101 * 109.25382 * 182.34921 * 22 21 20 24 24 O 1.43010 * 109.29587 * 303.22177 * 23 22 21 25 25 C 1.43020 * 113.73909 * 58.64962 * 24 23 22 26 26 C 1.47011 * 111.00259 * 170.00080 * 21 20 19 27 27 H 4.40645 * 5.51282 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.46873 * 306.46630 * 3 2 1 29 29 H 1.08992 * 109.46827 * 186.45946 * 3 2 1 30 30 H 0.97008 * 120.00222 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47319 * 59.99874 * 7 5 4 32 32 H 1.09006 * 109.46882 * 299.99890 * 7 5 4 33 33 H 1.08996 * 109.47584 * 65.11387 * 8 7 5 34 34 H 1.08994 * 109.46932 * 305.10837 * 8 7 5 35 35 H 1.08998 * 109.47250 * 48.38929 * 10 9 8 36 36 H 1.09004 * 109.47065 * 168.39043 * 10 9 8 37 37 H 0.96998 * 120.00537 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47080 * 49.99963 * 19 9 8 39 39 H 1.08998 * 109.47275 * 289.99915 * 19 9 8 40 40 H 1.09004 * 109.46893 * 60.00442 * 20 19 9 41 41 H 1.08995 * 109.47669 * 300.00200 * 20 19 9 42 42 H 1.09007 * 109.47154 * 62.44519 * 22 21 20 43 43 H 1.08998 * 109.54990 * 302.31078 * 22 21 20 44 44 H 1.08999 * 109.50680 * 183.26269 * 23 22 21 45 45 H 1.08994 * 109.50482 * 63.18290 * 23 22 21 46 46 H 1.08996 * 109.50474 * 61.26237 * 25 24 23 47 47 H 1.08998 * 109.50743 * 181.35112 * 25 24 23 48 48 H 1.09003 * 109.50497 * 57.67252 * 26 21 20 49 49 H 1.09000 * 109.50643 * 297.54397 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5507 -1.2663 5 6 4.4597 -0.6481 -1.4924 6 8 5.2477 -0.2796 -0.6473 7 6 4.9622 -1.2147 -2.7951 8 6 6.4922 -1.2141 -2.7951 9 7 6.9821 -1.6512 -4.1093 10 6 8.3754 -1.2347 -4.3169 11 6 8.4279 0.2567 -4.5268 12 1 7.5128 0.8287 -4.5687 13 6 9.6442 0.8910 -4.6654 14 7 10.7587 0.1946 -4.6138 15 14 9.7094 2.7398 -4.9249 16 1 9.7841 3.4222 -3.6080 17 1 10.9086 3.0847 -5.7299 18 1 8.4871 3.1821 -5.6430 19 6 6.8378 -3.1044 -4.2683 20 6 7.1198 -3.4888 -5.7221 21 7 6.9761 -4.9422 -5.8810 22 6 5.7454 -5.4234 -5.2366 23 6 5.6652 -6.9460 -5.3751 24 8 5.7259 -7.2985 -6.7597 25 6 6.9126 -6.8461 -7.4175 26 6 7.0049 -5.3224 -7.3008 27 1 -1.0499 -0.0002 0.0000 28 1 3.0096 -0.6100 0.8264 29 1 3.0088 1.0219 0.1156 30 1 2.5044 -0.8452 -1.9424 31 1 4.5983 -0.6041 -3.6214 32 1 4.5996 -2.2361 -2.9110 33 1 6.8559 -1.8963 -2.0267 34 1 6.8551 -0.2074 -2.5885 35 1 8.9681 -1.4995 -3.4414 36 1 8.7786 -1.7395 -5.1949 37 1 11.6144 0.6407 -4.7117 38 1 5.8221 -3.3997 -4.0048 39 1 7.5454 -3.6135 -3.6140 40 1 8.1355 -3.1936 -5.9855 41 1 6.4122 -2.9798 -6.3764 42 1 4.8806 -4.9680 -5.7194 43 1 5.7573 -5.1540 -4.1805 44 1 4.7265 -7.3012 -4.9499 45 1 6.5007 -7.4041 -4.8459 46 1 7.7848 -7.3007 -6.9478 47 1 6.8763 -7.1297 -8.4693 48 1 7.9362 -4.9786 -7.7509 49 1 6.1603 -4.8660 -7.8170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292885490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:24 Heat of formation + Delta-G solvation = -11.055871 kcal Electronic energy + Delta-G solvation = -27414.847351 eV Core-core repulsion = 23571.973434 eV Total energy + Delta-G solvation = -3842.873918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.73311 -39.54012 -37.28694 -35.65752 -35.28709 -32.83877 -32.60139 -31.37405 -31.06345 -29.23143 -27.47403 -26.83543 -25.20276 -24.09136 -22.85740 -22.08447 -20.55389 -20.23770 -19.51115 -18.76828 -17.00863 -16.56071 -16.38731 -16.10543 -16.04154 -15.75646 -15.10954 -15.09641 -15.04997 -14.51947 -14.40052 -14.26684 -13.98775 -13.59026 -13.43431 -13.12325 -12.91681 -12.56955 -12.25740 -12.14082 -11.91096 -11.57180 -11.43953 -11.17648 -11.16422 -11.04540 -10.81483 -10.75690 -10.68590 -10.56323 -10.36341 -10.15767 -9.77070 -9.68126 -9.61510 -9.19505 -9.16820 -8.41056 -8.23787 -7.32382 -5.99859 -4.00950 2.15382 2.44633 2.76545 3.34687 3.40611 3.41151 3.44348 3.72436 3.89897 3.97005 4.45456 4.74610 4.86595 4.98299 5.02802 5.11132 5.13386 5.25219 5.28948 5.32959 5.35516 5.43282 5.47705 5.52524 5.53561 5.55700 5.60082 5.72425 5.78112 5.84845 5.91307 5.92971 6.00914 6.24506 6.31046 6.42596 6.48804 6.78052 6.99884 7.06664 7.12084 7.17672 7.28197 7.37836 7.43693 7.83220 8.06723 8.16227 8.27980 8.53803 9.06571 9.63186 11.10619 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.005626 B = 0.004281 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4975.974396 B = 6538.313815 C =11041.822179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.204 4.204 3 C 0.228 3.772 4 N -0.737 5.737 5 C 0.517 3.483 6 O -0.531 6.531 7 C -0.132 4.132 8 C 0.080 3.920 9 N -0.538 5.538 10 C 0.192 3.808 11 C -0.506 4.506 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.054 3.946 20 C 0.060 3.940 21 N -0.537 5.537 22 C 0.013 3.987 23 C 0.063 3.937 24 O -0.390 6.390 25 C 0.064 3.936 26 C 0.019 3.981 27 H 0.221 0.779 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.403 0.597 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.095 0.905 35 H -0.004 1.004 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.005 -10.147 1.373 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.204 4.204 3 C 0.105 3.895 4 N -0.391 5.391 5 C 0.304 3.696 6 O -0.407 6.407 7 C -0.173 4.173 8 C -0.049 4.049 9 N -0.263 5.263 10 C 0.067 3.933 11 C -0.544 4.544 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.075 4.075 20 C -0.067 4.067 21 N -0.263 5.263 22 C -0.116 4.116 23 C -0.014 4.014 24 O -0.308 6.308 25 C -0.013 4.013 26 C -0.110 4.110 27 H 0.238 0.762 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.237 0.763 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.014 0.986 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.201 -9.948 1.756 19.093 hybrid contribution -0.402 1.125 -0.076 1.197 sum -16.603 -8.823 1.681 18.877 Atomic orbital electron populations 1.25001 0.95924 1.00569 0.98166 1.23029 0.94345 1.00879 1.02156 1.18064 0.82855 1.00731 0.87817 1.46076 1.07697 1.66496 1.18859 1.20999 0.81172 0.77785 0.89613 1.90733 1.55011 1.48003 1.46917 1.21687 0.99525 1.01802 0.94242 1.21665 0.90572 1.02942 0.89751 1.62045 1.26001 1.09455 1.28810 1.19795 0.81067 0.96288 0.96131 1.21142 0.92390 0.92203 1.48706 0.91924 1.24970 0.95630 0.98326 0.95578 1.69953 0.97485 1.35625 1.50694 0.86544 0.77461 0.85558 0.78143 1.20699 1.21324 1.19845 1.22122 0.99462 0.90557 0.95315 1.22197 1.02848 0.84483 0.97186 1.62280 1.35825 1.15024 1.13194 1.22862 0.91693 0.95978 1.01048 1.22679 1.02133 0.93882 0.82674 1.87946 1.41689 1.78099 1.23109 1.22664 0.87924 0.92956 0.97708 1.22754 1.02190 0.96559 0.89461 0.76208 0.89170 0.89057 0.76327 0.88015 0.89829 0.95350 0.88674 0.98607 0.94923 0.92956 0.92268 0.94973 0.89362 0.94005 0.94091 0.89196 0.88794 0.92368 0.92302 0.88669 0.89451 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 19.25 29.55 0.57 -0.77 16 2 C -0.20 -1.89 13.46 -37.12 -0.50 -2.39 16 3 C 0.23 2.35 6.15 -6.83 -0.04 2.31 16 4 N -0.74 -8.05 5.54 -63.17 -0.35 -8.40 16 5 C 0.52 7.54 7.83 -10.99 -0.09 7.45 16 6 O -0.53 -9.98 15.92 5.56 0.09 -9.89 16 7 C -0.13 -1.88 5.73 -27.89 -0.16 -2.04 16 8 C 0.08 1.52 4.18 -3.82 -0.02 1.51 16 9 N -0.54 -10.92 4.38 -236.07 -1.04 -11.96 16 10 C 0.19 4.85 4.60 -4.97 -0.02 4.83 16 11 C -0.51 -14.02 8.29 -34.44 -0.29 -14.30 16 12 H 0.06 1.73 7.77 -52.49 -0.41 1.32 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.05 0.92 4.05 -3.83 -0.02 0.90 16 20 C 0.06 0.98 5.24 -3.82 -0.02 0.96 16 21 N -0.54 -7.56 4.87 -234.30 -1.14 -8.70 16 22 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 23 C 0.06 0.68 7.01 37.21 0.26 0.94 16 24 O -0.39 -4.81 10.83 -35.23 -0.38 -5.19 16 25 C 0.06 0.70 7.01 37.21 0.26 0.96 16 26 C 0.02 0.23 5.63 -3.71 -0.02 0.21 16 27 H 0.22 0.85 7.80 -54.10 -0.42 0.43 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.40 3.40 8.45 -40.82 -0.34 3.06 16 31 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.08 0.99 6.95 -51.93 -0.36 0.63 16 33 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 34 H 0.09 2.15 6.89 -51.93 -0.36 1.79 16 35 H 0.00 -0.11 8.06 -51.93 -0.42 -0.53 16 36 H 0.03 0.87 5.95 -51.93 -0.31 0.56 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 38 H 0.06 0.85 4.85 -51.93 -0.25 0.60 16 39 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.09 1.67 6.29 -51.93 -0.33 1.34 16 41 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.09 1.04 6.05 -51.93 -0.31 0.72 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -33.15 397.48 -9.44 -42.59 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.13 Total: 2.49 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.19 Total: 2.21 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -1.79 Total: -54.95 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.29 Total: -15.09 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.15 -9.44 -42.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292885490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.532 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds