Wall clock time and date at job start Fri Apr 10 2020 18:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47042 * 66.46127 * 3 2 1 5 5 C 1.34777 * 120.00361 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99561 * 0.02562 * 5 4 3 7 7 C 1.50692 * 120.00307 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.47003 * 180.02562 * 7 5 4 9 9 N 1.46905 * 109.46824 * 185.11136 * 8 7 5 10 10 C 1.46901 * 110.99769 * 160.38973 * 9 8 7 11 11 C 1.50703 * 109.47083 * 288.38728 * 10 9 8 12 12 H 1.07996 * 120.00298 * 356.22988 * 11 10 9 13 13 C 1.37877 * 119.99859 * 176.22567 * 11 10 9 14 14 N 1.31516 * 120.00338 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99900 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47130 * 90.00102 * 15 13 11 17 17 H 1.48500 * 109.47053 * 210.00113 * 15 13 11 18 18 H 1.48502 * 109.46722 * 329.99974 * 15 13 11 19 19 C 1.46896 * 111.00200 * 284.34197 * 9 8 7 20 20 C 1.52997 * 109.47094 * 170.00038 * 19 9 8 21 21 N 1.46905 * 109.47267 * 179.97438 * 20 19 9 22 22 C 1.47017 * 110.99386 * 46.31655 * 21 20 19 23 23 C 1.53101 * 109.25382 * 182.34921 * 22 21 20 24 24 O 1.43010 * 109.29587 * 303.22177 * 23 22 21 25 25 C 1.43020 * 113.73909 * 58.64962 * 24 23 22 26 26 C 1.47011 * 111.00259 * 170.00080 * 21 20 19 27 27 H 4.40645 * 5.51282 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.46873 * 306.46630 * 3 2 1 29 29 H 1.08992 * 109.46827 * 186.45946 * 3 2 1 30 30 H 0.97008 * 120.00222 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47319 * 59.99874 * 7 5 4 32 32 H 1.09006 * 109.46882 * 299.99890 * 7 5 4 33 33 H 1.08996 * 109.47584 * 65.11387 * 8 7 5 34 34 H 1.08994 * 109.46932 * 305.10837 * 8 7 5 35 35 H 1.08998 * 109.47250 * 48.38929 * 10 9 8 36 36 H 1.09004 * 109.47065 * 168.39043 * 10 9 8 37 37 H 0.96998 * 120.00537 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47080 * 49.99963 * 19 9 8 39 39 H 1.08998 * 109.47275 * 289.99915 * 19 9 8 40 40 H 1.09004 * 109.46893 * 60.00442 * 20 19 9 41 41 H 1.08995 * 109.47669 * 300.00200 * 20 19 9 42 42 H 1.09007 * 109.47154 * 62.44519 * 22 21 20 43 43 H 1.08998 * 109.54990 * 302.31078 * 22 21 20 44 44 H 1.08999 * 109.50680 * 183.26269 * 23 22 21 45 45 H 1.08994 * 109.50482 * 63.18290 * 23 22 21 46 46 H 1.08996 * 109.50474 * 61.26237 * 25 24 23 47 47 H 1.08998 * 109.50743 * 181.35112 * 25 24 23 48 48 H 1.09003 * 109.50497 * 57.67252 * 26 21 20 49 49 H 1.09000 * 109.50643 * 297.54397 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5507 -1.2663 5 6 4.4597 -0.6481 -1.4924 6 8 5.2477 -0.2796 -0.6473 7 6 4.9622 -1.2147 -2.7951 8 6 6.4922 -1.2141 -2.7951 9 7 6.9821 -1.6512 -4.1093 10 6 8.3754 -1.2347 -4.3169 11 6 8.4279 0.2567 -4.5268 12 1 7.5128 0.8287 -4.5687 13 6 9.6442 0.8910 -4.6654 14 7 10.7587 0.1946 -4.6138 15 14 9.7094 2.7398 -4.9249 16 1 9.7841 3.4222 -3.6080 17 1 10.9086 3.0847 -5.7299 18 1 8.4871 3.1821 -5.6430 19 6 6.8378 -3.1044 -4.2683 20 6 7.1198 -3.4888 -5.7221 21 7 6.9761 -4.9422 -5.8810 22 6 5.7454 -5.4234 -5.2366 23 6 5.6652 -6.9460 -5.3751 24 8 5.7259 -7.2985 -6.7597 25 6 6.9126 -6.8461 -7.4175 26 6 7.0049 -5.3224 -7.3008 27 1 -1.0499 -0.0002 0.0000 28 1 3.0096 -0.6100 0.8264 29 1 3.0088 1.0219 0.1156 30 1 2.5044 -0.8452 -1.9424 31 1 4.5983 -0.6041 -3.6214 32 1 4.5996 -2.2361 -2.9110 33 1 6.8559 -1.8963 -2.0267 34 1 6.8551 -0.2074 -2.5885 35 1 8.9681 -1.4995 -3.4414 36 1 8.7786 -1.7395 -5.1949 37 1 11.6144 0.6407 -4.7117 38 1 5.8221 -3.3997 -4.0048 39 1 7.5454 -3.6135 -3.6140 40 1 8.1355 -3.1936 -5.9855 41 1 6.4122 -2.9798 -6.3764 42 1 4.8806 -4.9680 -5.7194 43 1 5.7573 -5.1540 -4.1805 44 1 4.7265 -7.3012 -4.9499 45 1 6.5007 -7.4041 -4.8459 46 1 7.7848 -7.3007 -6.9478 47 1 6.8763 -7.1297 -8.4693 48 1 7.9362 -4.9786 -7.7509 49 1 6.1603 -4.8660 -7.8170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292885490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:23 Heat of formation + Delta-G solvation = -37.343622 kcal Electronic energy + Delta-G solvation = -27415.987274 eV Core-core repulsion = 23571.973434 eV Total energy + Delta-G solvation = -3844.013840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91240 -40.56261 -38.75501 -36.68569 -36.43086 -34.74818 -33.64317 -32.50541 -32.15037 -30.66096 -28.93791 -27.99433 -26.56247 -25.10963 -24.59772 -23.41887 -21.75498 -21.32869 -20.95204 -19.54268 -18.64568 -17.94724 -17.56661 -17.10823 -17.05416 -16.89447 -16.67246 -16.26277 -16.02570 -15.97807 -15.69715 -15.36205 -15.31402 -14.82810 -14.50847 -14.39752 -14.23428 -14.08784 -13.84778 -13.44684 -13.24661 -12.94421 -12.84881 -12.58212 -12.52890 -12.37704 -12.31503 -12.11538 -11.87767 -11.81999 -11.51775 -11.47192 -11.33133 -11.22109 -10.88767 -10.64125 -10.56946 -10.14776 -9.36218 -9.09103 -8.18479 -6.27423 1.39731 1.41390 1.41965 1.52014 1.58927 1.83262 2.39024 2.48189 2.69928 2.98270 3.14074 3.34790 3.40864 3.82780 3.89649 3.97339 4.04684 4.10019 4.14651 4.23056 4.32568 4.36662 4.41337 4.48709 4.51174 4.56733 4.64348 4.69933 4.74888 4.84354 4.87446 4.89565 4.94555 4.99945 5.04539 5.05402 5.12322 5.26676 5.29413 5.34961 5.67106 5.92846 6.01045 6.09361 6.19307 6.27989 6.47838 6.57272 6.61603 6.87997 7.19585 7.41450 8.92165 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.005626 B = 0.004281 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4975.974396 B = 6538.313815 C =11041.822179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.249 4.249 3 C 0.229 3.771 4 N -0.717 5.717 5 C 0.519 3.481 6 O -0.582 6.582 7 C -0.118 4.118 8 C 0.084 3.916 9 N -0.535 5.535 10 C 0.208 3.792 11 C -0.518 4.518 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.962 3.038 16 H -0.279 1.279 17 H -0.280 1.280 18 H -0.262 1.262 19 C 0.059 3.941 20 C 0.073 3.927 21 N -0.548 5.548 22 C 0.011 3.989 23 C 0.064 3.936 24 O -0.402 6.402 25 C 0.067 3.933 26 C 0.017 3.983 27 H 0.256 0.744 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.418 0.582 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.017 0.983 34 H 0.054 0.946 35 H -0.044 1.044 36 H 0.017 0.983 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.017 0.983 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.118 0.882 48 H 0.084 0.916 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.389 -10.676 0.834 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.249 4.249 3 C 0.106 3.894 4 N -0.370 5.370 5 C 0.307 3.693 6 O -0.461 6.461 7 C -0.158 4.158 8 C -0.045 4.045 9 N -0.259 5.259 10 C 0.082 3.918 11 C -0.557 4.557 12 H 0.080 0.920 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.787 3.213 16 H -0.205 1.205 17 H -0.206 1.206 18 H -0.186 1.186 19 C -0.069 4.069 20 C -0.055 4.055 21 N -0.274 5.274 22 C -0.117 4.117 23 C -0.013 4.013 24 O -0.321 6.321 25 C -0.009 4.009 26 C -0.111 4.111 27 H 0.272 0.728 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.255 0.745 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.036 0.964 34 H 0.072 0.928 35 H -0.026 1.026 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.136 0.864 48 H 0.102 0.898 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.659 -10.501 1.200 22.320 hybrid contribution 0.559 1.221 0.124 1.348 sum -19.100 -9.280 1.324 21.277 Atomic orbital electron populations 1.25859 0.96617 0.98077 0.95626 1.22931 0.94348 1.03148 1.04466 1.17966 0.84157 1.00086 0.87153 1.45870 1.06641 1.64996 1.19505 1.20978 0.81976 0.77311 0.89073 1.90723 1.56540 1.50435 1.48434 1.21516 0.95440 1.04235 0.94600 1.21539 0.94149 1.00177 0.88669 1.62004 1.22534 1.11880 1.29481 1.19422 0.83460 0.95330 0.93602 1.21460 0.92467 0.93445 1.48302 0.92036 1.25853 0.95256 1.03194 0.95265 1.70081 0.98069 1.37617 1.51704 0.85486 0.77974 0.79677 0.78135 1.20477 1.20579 1.18642 1.22185 1.01101 0.88027 0.95563 1.21905 1.00719 0.86389 0.96486 1.62244 1.37510 1.13049 1.14597 1.22954 0.90610 0.97030 1.01061 1.22803 1.03552 0.92742 0.82205 1.87935 1.42134 1.78158 1.23834 1.22739 0.87669 0.91483 0.99037 1.22827 1.02050 0.97862 0.88376 0.72763 0.89504 0.90013 0.74517 0.86769 0.86303 0.96441 0.92781 1.02595 0.96506 0.92806 0.88588 0.96425 0.92772 0.94159 0.93730 0.88653 0.86214 0.92424 0.92300 0.86413 0.89756 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 19.25 74.32 1.43 -0.25 16 2 C -0.25 -4.12 13.46 31.13 0.42 -3.70 16 3 C 0.23 4.58 6.15 84.57 0.52 5.10 16 4 N -0.72 -14.62 5.54 -472.15 -2.61 -17.23 16 5 C 0.52 14.86 7.83 87.65 0.69 15.54 16 6 O -0.58 -22.50 15.92 -3.03 -0.05 -22.55 16 7 C -0.12 -3.20 5.73 29.85 0.17 -3.03 16 8 C 0.08 3.29 4.18 86.30 0.36 3.65 16 9 N -0.53 -22.24 4.38 -900.80 -3.95 -26.19 16 10 C 0.21 11.11 4.60 85.56 0.39 11.50 16 11 C -0.52 -29.75 8.29 25.60 0.21 -29.54 16 12 H 0.06 3.47 7.77 -2.91 -0.02 3.45 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 15 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 19 C 0.06 2.01 4.05 86.30 0.35 2.36 16 20 C 0.07 2.41 5.24 86.30 0.45 2.87 16 21 N -0.55 -15.05 4.87 -895.19 -4.36 -19.41 16 22 C 0.01 0.25 4.94 86.31 0.43 0.67 16 23 C 0.06 1.21 7.01 72.02 0.50 1.72 16 24 O -0.40 -8.97 10.83 -148.98 -1.61 -10.58 16 25 C 0.07 1.35 7.01 72.02 0.50 1.86 16 26 C 0.02 0.41 5.63 86.32 0.49 0.89 16 27 H 0.26 0.78 7.80 -4.42 -0.03 0.74 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.42 5.96 8.45 -92.70 -0.78 5.18 16 31 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.12 2.40 6.95 -2.38 -0.02 2.38 16 33 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 34 H 0.05 2.57 6.89 -2.39 -0.02 2.56 16 35 H -0.04 -2.64 8.06 -2.39 -0.02 -2.66 16 36 H 0.02 0.95 5.95 -2.39 -0.01 0.94 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.10 2.54 4.85 -2.39 -0.01 2.53 16 39 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 40 H 0.05 2.16 6.29 -2.38 -0.01 2.14 16 41 H 0.04 1.33 8.08 -2.39 -0.02 1.31 16 42 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.10 1.95 6.05 -2.39 -0.01 1.94 16 44 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -75.82 397.48 -2.75 -78.57 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.15 Total: 16.73 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 7.38 Total: 10.22 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -10.64 Total: -119.86 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.66 Total: -33.13 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -75.82 -2.75 -78.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292885490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.225 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds