Wall clock time and date at job start Fri Apr 10 2020 18:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.50470 * 2 1 4 4 C 1.53123 * 109.50366 * 120.11596 * 2 1 3 5 5 C 1.53120 * 109.15805 * 62.28566 * 4 2 1 6 6 C 1.53035 * 109.27559 * 57.65868 * 5 4 2 7 7 N 1.46852 * 109.52370 * 300.81331 * 6 5 4 8 8 C 1.46895 * 110.99790 * 185.84447 * 7 6 5 9 9 C 1.50709 * 109.47181 * 298.61867 * 8 7 6 10 10 O 1.21280 * 119.99877 * 355.51935 * 9 8 7 11 11 N 1.34773 * 119.99877 * 175.51885 * 9 8 7 12 12 C 1.46497 * 120.00044 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47253 * 270.00166 * 12 11 9 14 14 H 1.08004 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00364 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99572 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00353 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46896 * 89.99887 * 17 15 13 19 19 H 1.48500 * 109.47042 * 209.99435 * 17 15 13 20 20 H 1.48497 * 109.47199 * 330.00109 * 17 15 13 21 21 C 1.46504 * 119.99977 * 0.02562 * 11 9 8 22 22 C 1.53007 * 109.46791 * 269.99740 * 21 11 9 23 23 C 1.47199 * 109.47033 * 180.02562 * 22 21 11 24 24 N 9.05125 * 88.81783 * 221.16679 * 2 1 3 25 25 C 1.46841 * 111.19050 * 61.74676 * 7 6 5 26 26 H 1.09007 * 109.46662 * 58.27784 * 25 7 6 27 27 C 1.53007 * 109.45918 * 178.25144 * 25 7 6 28 28 O 1.42907 * 109.47209 * 292.13524 * 27 25 7 29 29 H 1.09001 * 109.47217 * 180.08318 * 1 2 3 30 30 H 1.09006 * 109.47400 * 300.08309 * 1 2 3 31 31 H 1.09007 * 109.47116 * 60.07895 * 1 2 3 32 32 H 1.09001 * 109.52463 * 182.19008 * 4 2 1 33 33 H 1.08997 * 109.52236 * 302.32061 * 4 2 1 34 34 H 1.09005 * 109.49873 * 177.59657 * 5 4 2 35 35 H 1.08990 * 109.50377 * 297.67212 * 5 4 2 36 36 H 1.09004 * 109.45972 * 180.80206 * 6 5 4 37 37 H 1.08994 * 109.46875 * 60.83735 * 6 5 4 38 38 H 1.09003 * 109.46880 * 178.62161 * 8 7 6 39 39 H 1.08993 * 109.47681 * 58.62114 * 8 7 6 40 40 H 1.08996 * 109.46695 * 29.99873 * 12 11 9 41 41 H 1.08999 * 109.46916 * 150.00038 * 12 11 9 42 42 H 0.96997 * 119.99865 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.47054 * 150.00503 * 21 11 9 44 44 H 1.08995 * 109.47387 * 29.99803 * 21 11 9 45 45 H 1.08998 * 109.46698 * 60.00546 * 22 21 11 46 46 H 1.08995 * 109.47207 * 300.00174 * 22 21 11 47 47 H 1.08997 * 109.46926 * 52.13458 * 27 25 7 48 48 H 1.08998 * 109.47041 * 172.13380 * 27 25 7 49 49 H 0.96697 * 113.99796 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7242 1.2485 5 6 1.5749 -2.1822 1.2100 6 6 2.0846 -2.8419 -0.0733 7 7 1.5675 -2.1130 -1.2386 8 6 1.9223 -2.7988 -2.4883 9 6 3.4224 -2.8608 -2.6189 10 8 4.1258 -2.3107 -1.7983 11 7 3.9822 -3.5277 -3.6476 12 6 5.4404 -3.5875 -3.7749 13 6 5.9211 -2.4208 -4.5987 14 1 5.2113 -1.7063 -4.9889 15 6 7.2669 -2.2658 -4.8554 16 7 8.1312 -3.1361 -4.3807 17 14 7.8626 -0.8200 -5.8771 18 1 8.1540 0.3304 -4.9842 19 1 9.0971 -1.2050 -6.6071 20 1 6.8103 -0.4358 -6.8519 21 6 3.1325 -4.1918 -4.6392 22 6 2.8553 -5.6288 -4.1927 23 6 2.0020 -6.2963 -5.1892 24 7 1.3432 -6.8123 -5.9567 25 6 2.0409 -0.7231 -1.2482 26 1 3.1309 -0.7106 -1.2546 27 6 1.5157 -0.0144 -2.4984 28 8 2.1368 -0.5720 -3.6584 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 3.1305 -0.6906 1.2688 33 1 1.6450 -0.2375 2.1397 34 1 1.9715 -2.7140 2.0750 35 1 0.4857 -2.2165 1.2298 36 1 1.7423 -3.8761 -0.1106 37 1 3.1742 -2.8196 -0.0851 38 1 1.5063 -2.2511 -3.3339 39 1 1.5166 -3.8103 -2.4755 40 1 5.8936 -3.5442 -2.7846 41 1 5.7244 -4.5192 -4.2641 42 1 9.0780 -3.0270 -4.5609 43 1 3.6401 -4.2026 -5.6037 44 1 2.1902 -3.6515 -4.7305 45 1 2.3477 -5.6179 -3.2282 46 1 3.7975 -6.1690 -4.1014 47 1 0.4360 -0.1475 -2.5649 48 1 1.7477 1.0489 -2.4377 49 1 1.8501 -0.1698 -4.4897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305445473.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:36 Heat of formation + Delta-G solvation = -48.256150 kcal Electronic energy + Delta-G solvation = -29771.168783 eV Core-core repulsion = 25926.681741 eV Total energy + Delta-G solvation = -3844.487043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35705 -38.39764 -36.77553 -36.36858 -35.18328 -33.72644 -32.76126 -31.89059 -30.74536 -28.55405 -27.23315 -26.37563 -25.23901 -23.89694 -23.02186 -22.01508 -21.27961 -18.79984 -18.24047 -17.54332 -17.15893 -16.55198 -16.34437 -15.92303 -15.80788 -15.09482 -14.66433 -14.51334 -14.38073 -14.19439 -14.01394 -13.58907 -13.41111 -13.24274 -12.96061 -12.73457 -12.59521 -12.38505 -12.33404 -12.08519 -11.84688 -11.79562 -11.67173 -11.27163 -11.22498 -11.09923 -10.95311 -10.81082 -10.66353 -10.58623 -10.48114 -10.13977 -10.08531 -9.98816 -9.67279 -9.51041 -9.46763 -8.42078 -7.69864 -7.60564 -6.03177 -4.06287 2.78957 2.86219 3.31362 3.37448 3.38748 3.50498 3.78960 4.11178 4.32645 4.35602 4.47013 4.80919 4.95504 5.07925 5.09171 5.21161 5.30562 5.30939 5.37722 5.41973 5.47229 5.49023 5.50933 5.53576 5.65716 5.69992 5.78969 5.87171 5.90116 5.97001 6.05800 6.08783 6.14164 6.18423 6.24787 6.31476 6.43409 6.49647 6.63548 7.00934 7.25780 7.34189 7.45013 7.56008 7.62592 7.78746 7.94443 8.26257 8.42834 8.94624 9.15079 9.58679 11.05055 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.005050 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.621048 B = 5542.693656 C = 7183.743033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.113 4.113 6 C 0.036 3.964 7 N -0.506 5.506 8 C 0.019 3.981 9 C 0.498 3.502 10 O -0.540 6.540 11 N -0.596 5.596 12 C 0.245 3.755 13 C -0.519 4.519 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.897 5.897 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.121 3.879 22 C -0.051 4.051 23 C 0.219 3.781 24 N -0.448 5.448 25 C 0.070 3.930 26 H 0.093 0.907 27 C 0.080 3.920 28 O -0.556 6.556 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.050 0.950 48 H 0.044 0.956 49 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 2.779 7.340 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.091 4.091 7 N -0.229 5.229 8 C -0.112 4.112 9 C 0.285 3.715 10 O -0.418 6.418 11 N -0.327 5.327 12 C 0.126 3.874 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.536 5.536 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.006 4.006 22 C -0.093 4.093 23 C -0.099 4.099 24 N -0.125 5.125 25 C -0.038 4.038 26 H 0.110 0.890 27 C 0.002 3.998 28 O -0.361 6.361 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.148 0.852 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.123 0.877 46 H 0.133 0.867 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -16.367 1.903 7.137 17.956 hybrid contribution 1.378 1.292 -0.852 2.072 sum -14.988 3.195 6.286 16.564 Atomic orbital electron populations 1.21835 0.94992 1.02710 1.00316 1.21091 0.96245 0.98422 0.94164 0.91380 1.21567 1.00948 0.95753 0.96894 1.21564 1.01041 0.95566 0.96898 1.22301 1.00598 0.96503 0.89742 1.62436 1.57353 1.01737 1.01396 1.22741 0.92554 1.00330 0.95550 1.21455 0.90898 0.78092 0.81068 1.90535 1.64314 1.45024 1.41942 1.48252 1.09032 1.51047 1.24419 1.19263 0.72902 0.96947 0.98301 1.21440 0.92206 1.10058 1.32045 0.92253 1.24920 0.96696 0.96360 0.96179 1.69927 1.02293 1.35783 1.45637 0.86541 0.78108 0.82819 0.80162 1.20749 1.21318 1.19989 1.21231 0.96160 0.89023 0.94140 1.19930 0.98029 0.97155 0.94187 1.29102 0.93444 0.93338 0.94034 1.81177 1.10884 1.09831 1.10618 1.21926 1.01525 0.88023 0.92331 0.88976 1.22271 0.95982 0.95796 0.85750 1.86735 1.70327 1.62666 1.16421 0.91068 0.93787 0.93268 0.91826 0.92247 0.92088 0.91526 0.91778 0.91359 0.85181 0.89994 0.93976 0.95213 0.92854 0.89158 0.90562 0.87711 0.86697 0.93152 0.93743 0.78204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.39 37.15 0.31 -1.08 16 2 C -0.08 -0.93 2.74 -90.54 -0.25 -1.18 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -1.32 5.51 -26.61 -0.15 -1.46 16 5 C -0.11 -1.28 5.74 -26.65 -0.15 -1.43 16 6 C 0.04 0.49 5.03 -3.83 -0.02 0.47 16 7 N -0.51 -6.83 3.98 -228.12 -0.91 -7.74 16 8 C 0.02 0.27 3.77 -4.97 -0.02 0.25 16 9 C 0.50 9.15 6.10 -10.98 -0.07 9.09 16 10 O -0.54 -12.15 11.21 5.56 0.06 -12.09 16 11 N -0.60 -11.05 2.46 -175.06 -0.43 -11.48 16 12 C 0.25 5.91 5.16 -5.20 -0.03 5.88 16 13 C -0.52 -14.01 9.39 -34.44 -0.32 -14.33 16 14 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 17 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.12 1.67 5.10 -4.04 -0.02 1.65 16 22 C -0.05 -0.56 5.98 -29.52 -0.18 -0.74 16 23 C 0.22 2.72 15.43 -20.78 -0.32 2.40 16 24 N -0.45 -6.70 18.53 42.13 0.78 -5.92 16 25 C 0.07 0.99 1.57 -67.72 -0.11 0.88 16 26 H 0.09 1.74 5.58 -51.93 -0.29 1.45 16 27 C 0.08 0.98 5.63 37.16 0.21 1.19 16 28 O -0.56 -7.62 9.38 -35.23 -0.33 -7.95 16 29 H 0.07 0.75 6.01 -51.93 -0.31 0.44 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.46 6.60 -51.93 -0.34 0.11 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.70 6.58 -51.93 -0.34 0.36 16 36 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 37 H 0.07 1.17 5.78 -51.93 -0.30 0.87 16 38 H 0.13 1.74 4.56 -51.92 -0.24 1.51 16 39 H 0.08 0.96 6.93 -51.93 -0.36 0.60 16 40 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 41 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 44 H 0.08 0.90 6.57 -51.93 -0.34 0.56 16 45 H 0.10 0.96 7.14 -51.93 -0.37 0.59 16 46 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.05 0.54 6.87 -51.93 -0.36 0.18 16 48 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 49 H 0.37 3.51 9.12 45.56 0.42 3.93 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -33.26 377.21 -7.61 -40.87 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.98 Total: 4.20 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.20 Total: 3.16 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.18 Total: -50.40 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.27 Total: -20.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.26 -7.61 -40.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305445473.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.389 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds