Wall clock time and date at job start Fri Apr 10 2020 18:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50553 * 2 1 4 4 C 1.53125 * 109.49825 * 239.92073 * 2 1 3 5 5 C 1.53123 * 109.15545 * 182.40465 * 4 2 1 6 6 C 1.53038 * 109.28155 * 57.65774 * 5 4 2 7 7 N 1.46844 * 109.52204 * 300.81923 * 6 5 4 8 8 C 1.46897 * 111.00387 * 185.83703 * 7 6 5 9 9 C 1.50702 * 109.47187 * 294.86429 * 8 7 6 10 10 O 1.21285 * 119.99947 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99581 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.46972 * 269.99904 * 12 11 9 14 14 H 1.08002 * 120.00548 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00162 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99945 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00280 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46801 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47084 * 59.99901 * 17 15 13 20 20 H 1.48499 * 109.46806 * 299.99777 * 17 15 13 21 21 C 1.46496 * 120.00398 * 359.97438 * 11 9 8 22 22 C 1.53000 * 109.47201 * 270.00358 * 21 11 9 23 23 C 1.47200 * 109.47306 * 180.02562 * 22 21 11 24 24 N 9.05642 * 133.83191 * 108.89852 * 2 1 3 25 25 C 1.46853 * 111.19935 * 61.74123 * 7 6 5 26 26 H 1.08996 * 109.46358 * 58.27251 * 25 7 6 27 27 C 1.53000 * 109.46259 * 178.24606 * 25 7 6 28 28 O 1.42908 * 109.46700 * 292.63033 * 27 25 7 29 29 H 1.09005 * 109.47414 * 180.08169 * 1 2 3 30 30 H 1.08999 * 109.46881 * 300.07530 * 1 2 3 31 31 H 1.08999 * 109.47161 * 60.07616 * 1 2 3 32 32 H 1.08990 * 109.52181 * 62.50261 * 4 2 1 33 33 H 1.08995 * 109.52395 * 302.30779 * 4 2 1 34 34 H 1.08996 * 109.50793 * 297.71287 * 5 4 2 35 35 H 1.09003 * 109.53107 * 177.61934 * 5 4 2 36 36 H 1.08994 * 109.46577 * 180.80343 * 6 5 4 37 37 H 1.09000 * 109.45471 * 60.82619 * 6 5 4 38 38 H 1.08992 * 109.47539 * 174.85894 * 8 7 6 39 39 H 1.09007 * 109.46613 * 54.85861 * 8 7 6 40 40 H 1.09002 * 109.46567 * 150.00080 * 12 11 9 41 41 H 1.08997 * 109.47344 * 29.99890 * 12 11 9 42 42 H 0.97006 * 119.99641 * 0.02562 * 16 15 13 43 43 H 1.09006 * 109.46708 * 29.99690 * 21 11 9 44 44 H 1.08997 * 109.47106 * 149.99585 * 21 11 9 45 45 H 1.09006 * 109.46744 * 299.99310 * 22 21 11 46 46 H 1.09002 * 109.47263 * 59.99505 * 22 21 11 47 47 H 1.08997 * 109.47411 * 52.62617 * 27 25 7 48 48 H 1.08996 * 109.47223 * 172.63611 * 27 25 7 49 49 H 0.96705 * 113.99286 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7234 -1.2491 5 6 3.5711 -0.7716 -1.2111 6 6 4.0229 -1.4731 0.0718 7 7 3.5093 -0.7427 1.2375 8 6 4.0373 -1.3068 2.4869 9 6 3.5189 -2.7109 2.6626 10 8 2.7817 -3.1939 1.8292 11 7 3.8743 -3.4299 3.7457 12 6 3.3699 -4.7947 3.9166 13 6 2.0709 -4.7582 4.6797 14 1 1.6617 -3.8129 5.0045 15 6 1.4047 -5.9315 4.9633 16 7 1.9031 -7.0827 4.5683 17 14 -0.2059 -5.8862 5.9086 18 1 -0.7164 -7.2697 6.0831 19 1 -1.2004 -5.0825 5.1537 20 1 0.0195 -5.2706 7.2411 21 6 4.7651 -2.8468 4.7519 22 6 6.2185 -3.1559 4.3870 23 6 7.1135 -2.5705 5.3985 24 7 7.8020 -2.1160 6.1809 25 6 2.0409 -0.7240 1.2478 26 1 1.6647 -1.7469 1.2537 27 6 1.5491 0.0072 2.4985 28 8 1.8777 -0.7598 3.6587 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8906 32 1 1.7156 -0.1864 -2.1398 33 1 1.6451 -1.7387 -1.2696 34 1 3.9678 0.2435 -1.2298 35 1 3.9400 -1.3224 -2.0764 36 1 5.1120 -1.4964 0.1088 37 1 3.6373 -2.4926 0.0832 38 1 3.7150 -0.6927 3.3276 39 1 5.1264 -1.3241 2.4460 40 1 4.1000 -5.3852 4.4702 41 1 3.2040 -5.2460 2.9384 42 1 2.7397 -7.1063 4.0778 43 1 4.6202 -1.7669 4.7833 44 1 4.5374 -3.2725 5.7292 45 1 6.3634 -4.2358 4.3557 46 1 6.4461 -2.7302 3.4097 47 1 2.0291 0.9838 2.5608 48 1 0.4683 0.1364 2.4425 49 1 1.5947 -0.3556 4.4904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305445474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:40 Heat of formation + Delta-G solvation = -53.940593 kcal Electronic energy + Delta-G solvation = -29806.005681 eV Core-core repulsion = 25961.272142 eV Total energy + Delta-G solvation = -3844.733539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.34798 -38.38541 -36.80894 -36.30791 -35.27678 -33.98417 -33.05100 -32.11722 -30.76218 -28.59133 -27.10915 -26.10999 -25.14863 -23.92031 -22.91219 -21.56583 -21.25729 -19.68017 -18.55695 -17.60385 -17.23765 -16.91275 -16.44383 -15.93115 -15.73690 -15.03459 -14.65995 -14.48249 -14.21503 -14.16045 -14.03196 -13.70039 -13.49501 -13.26135 -12.87015 -12.74070 -12.56471 -12.52589 -12.41150 -12.33554 -12.00663 -11.78604 -11.67414 -11.41815 -11.33557 -11.18369 -10.89702 -10.78014 -10.73364 -10.58819 -10.54635 -10.20315 -10.11757 -10.06319 -9.61503 -9.52762 -9.11055 -8.37185 -7.69220 -7.66115 -6.35879 -4.07046 2.71869 2.79392 3.39570 3.43569 3.46663 3.63566 3.70507 4.03771 4.26104 4.35200 4.54572 4.77057 4.92898 5.00106 5.01990 5.14036 5.24034 5.26638 5.33841 5.36989 5.41277 5.48498 5.50429 5.56531 5.60504 5.64295 5.74511 5.80982 5.83811 5.93955 5.95493 6.02572 6.06700 6.11041 6.19375 6.23277 6.32974 6.40429 6.64720 6.77095 7.11180 7.21117 7.28979 7.40894 7.56379 7.79638 8.06935 8.29798 8.48556 8.81187 9.06290 9.61730 11.01286 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.008882 B = 0.005402 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.853140 B = 5181.652104 C = 7081.972415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.112 4.112 6 C 0.038 3.962 7 N -0.510 5.510 8 C 0.026 3.974 9 C 0.501 3.499 10 O -0.540 6.540 11 N -0.591 5.591 12 C 0.236 3.764 13 C -0.597 4.597 14 H 0.054 0.946 15 C 0.018 3.982 16 N -0.913 5.913 17 Si 1.069 2.931 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.122 3.878 22 C -0.051 4.051 23 C 0.217 3.783 24 N -0.445 5.445 25 C 0.067 3.933 26 H 0.097 0.903 27 C 0.078 3.922 28 O -0.556 6.556 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.019 0.981 41 H 0.032 0.968 42 H 0.266 0.734 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.045 0.955 48 H 0.050 0.950 49 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 15.410 -7.692 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.097 4.097 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.089 4.089 7 N -0.233 5.233 8 C -0.105 4.105 9 C 0.288 3.712 10 O -0.419 6.419 11 N -0.322 5.322 12 C 0.116 3.884 13 C -0.636 4.636 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.549 5.549 17 Si 0.898 3.102 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.215 1.215 21 C -0.005 4.005 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.122 5.122 25 C -0.041 4.041 26 H 0.115 0.885 27 C 0.000 4.000 28 O -0.362 6.362 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.144 0.856 39 H 0.100 0.900 40 H 0.037 0.963 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.682 14.944 -6.851 16.657 hybrid contribution 0.488 0.352 -0.323 0.683 sum 3.170 15.296 -7.174 17.189 Atomic orbital electron populations 1.21913 0.95176 1.02323 1.01385 1.21063 0.94995 0.99561 0.94113 0.91015 1.21600 0.95756 1.00842 0.96927 1.21532 0.95742 1.00866 0.96862 1.22269 0.98941 0.97903 0.89834 1.62445 1.08133 1.51380 1.01383 1.22630 0.99389 0.93267 0.95250 1.21427 0.80808 0.87717 0.81207 1.90527 1.36712 1.71722 1.42927 1.48028 1.46286 1.17041 1.20813 1.19313 0.94532 0.77286 0.97294 1.22237 1.07576 0.95507 1.38302 0.92774 1.25742 1.03371 0.92091 0.97360 1.70815 1.21183 1.26610 1.36300 0.83536 0.75178 0.75822 0.75703 1.20841 1.21563 1.21548 1.21231 0.85721 0.99321 0.94215 1.19915 0.92695 1.02578 0.94056 1.29125 0.93697 0.93173 0.94062 1.81246 1.10530 1.09919 1.10539 1.22018 0.87871 1.01768 0.92401 0.88542 1.22299 0.98236 0.93691 0.85761 1.86744 1.82036 1.51084 1.16304 0.92293 0.92551 0.92688 0.92182 0.91773 0.91764 0.91914 0.91740 0.91694 0.85594 0.89970 0.96344 0.95034 0.92339 0.90368 0.89205 0.86874 0.87689 0.93637 0.93187 0.78186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.87 37.16 0.33 -1.30 16 2 C -0.08 -0.93 2.40 -90.53 -0.22 -1.15 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -1.32 5.29 -26.60 -0.14 -1.47 16 5 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 6 C 0.04 0.53 5.08 -3.84 -0.02 0.51 16 7 N -0.51 -7.13 4.69 -228.12 -1.07 -8.20 16 8 C 0.03 0.36 3.81 -4.98 -0.02 0.34 16 9 C 0.50 9.30 5.81 -10.99 -0.06 9.23 16 10 O -0.54 -12.26 11.20 5.55 0.06 -12.19 16 11 N -0.59 -11.02 2.46 -175.06 -0.43 -11.45 16 12 C 0.24 5.66 4.47 -5.19 -0.02 5.63 16 13 C -0.60 -16.27 9.39 -34.44 -0.32 -16.59 16 14 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 16 N -0.91 -27.19 13.65 55.43 0.76 -26.43 16 17 Si 1.07 25.22 29.90 -169.99 -5.08 20.13 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 21 C 0.12 1.70 5.17 -4.04 -0.02 1.68 16 22 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 23 C 0.22 2.71 15.44 -20.73 -0.32 2.39 16 24 N -0.44 -6.65 18.54 42.19 0.78 -5.87 16 25 C 0.07 0.98 1.37 -67.72 -0.09 0.88 16 26 H 0.10 1.86 5.43 -51.93 -0.28 1.58 16 27 C 0.08 0.99 6.11 37.16 0.23 1.22 16 28 O -0.56 -7.90 9.16 -35.23 -0.32 -8.22 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.57 6.31 -51.93 -0.33 0.24 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.06 1.11 5.93 -51.93 -0.31 0.80 16 38 H 0.13 1.71 4.62 -51.93 -0.24 1.47 16 39 H 0.08 0.98 7.12 -51.92 -0.37 0.61 16 40 H 0.02 0.44 7.94 -51.93 -0.41 0.03 16 41 H 0.03 0.86 7.29 -51.93 -0.38 0.48 16 42 H 0.27 7.84 7.22 -40.82 -0.29 7.55 16 43 H 0.08 0.94 6.44 -51.93 -0.33 0.60 16 44 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 45 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.11 0.96 7.22 -51.93 -0.38 0.59 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.60 6.10 -51.93 -0.32 0.28 16 49 H 0.37 3.74 9.12 45.56 0.42 4.15 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -34.18 379.69 -7.78 -41.95 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.07 Total: 4.95 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.12 Total: -0.39 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.04 Total: -51.96 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.26 Total: -20.41 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.18 -7.78 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305445474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.987 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds