Wall clock time and date at job start Fri Apr 10 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50553 * 2 1 4 4 C 1.53125 * 109.49825 * 239.92073 * 2 1 3 5 5 C 1.53123 * 109.15545 * 182.40465 * 4 2 1 6 6 C 1.53038 * 109.28155 * 57.65774 * 5 4 2 7 7 N 1.46844 * 109.52204 * 300.81923 * 6 5 4 8 8 C 1.46897 * 111.00387 * 185.83703 * 7 6 5 9 9 C 1.50702 * 109.47187 * 294.86429 * 8 7 6 10 10 O 1.21285 * 119.99947 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99581 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.46972 * 269.99904 * 12 11 9 14 14 H 1.08002 * 120.00548 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00162 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99945 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00280 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46801 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47084 * 59.99901 * 17 15 13 20 20 H 1.48499 * 109.46806 * 299.99777 * 17 15 13 21 21 C 1.46496 * 120.00398 * 359.97438 * 11 9 8 22 22 C 1.53000 * 109.47201 * 270.00358 * 21 11 9 23 23 C 1.47200 * 109.47306 * 180.02562 * 22 21 11 24 24 N 9.05642 * 133.83191 * 108.89852 * 2 1 3 25 25 C 1.46853 * 111.19935 * 61.74123 * 7 6 5 26 26 H 1.08996 * 109.46358 * 58.27251 * 25 7 6 27 27 C 1.53000 * 109.46259 * 178.24606 * 25 7 6 28 28 O 1.42908 * 109.46700 * 292.63033 * 27 25 7 29 29 H 1.09005 * 109.47414 * 180.08169 * 1 2 3 30 30 H 1.08999 * 109.46881 * 300.07530 * 1 2 3 31 31 H 1.08999 * 109.47161 * 60.07616 * 1 2 3 32 32 H 1.08990 * 109.52181 * 62.50261 * 4 2 1 33 33 H 1.08995 * 109.52395 * 302.30779 * 4 2 1 34 34 H 1.08996 * 109.50793 * 297.71287 * 5 4 2 35 35 H 1.09003 * 109.53107 * 177.61934 * 5 4 2 36 36 H 1.08994 * 109.46577 * 180.80343 * 6 5 4 37 37 H 1.09000 * 109.45471 * 60.82619 * 6 5 4 38 38 H 1.08992 * 109.47539 * 174.85894 * 8 7 6 39 39 H 1.09007 * 109.46613 * 54.85861 * 8 7 6 40 40 H 1.09002 * 109.46567 * 150.00080 * 12 11 9 41 41 H 1.08997 * 109.47344 * 29.99890 * 12 11 9 42 42 H 0.97006 * 119.99641 * 0.02562 * 16 15 13 43 43 H 1.09006 * 109.46708 * 29.99690 * 21 11 9 44 44 H 1.08997 * 109.47106 * 149.99585 * 21 11 9 45 45 H 1.09006 * 109.46744 * 299.99310 * 22 21 11 46 46 H 1.09002 * 109.47263 * 59.99505 * 22 21 11 47 47 H 1.08997 * 109.47411 * 52.62617 * 27 25 7 48 48 H 1.08996 * 109.47223 * 172.63611 * 27 25 7 49 49 H 0.96705 * 113.99286 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7234 -1.2491 5 6 3.5711 -0.7716 -1.2111 6 6 4.0229 -1.4731 0.0718 7 7 3.5093 -0.7427 1.2375 8 6 4.0373 -1.3068 2.4869 9 6 3.5189 -2.7109 2.6626 10 8 2.7817 -3.1939 1.8292 11 7 3.8743 -3.4299 3.7457 12 6 3.3699 -4.7947 3.9166 13 6 2.0709 -4.7582 4.6797 14 1 1.6617 -3.8129 5.0045 15 6 1.4047 -5.9315 4.9633 16 7 1.9031 -7.0827 4.5683 17 14 -0.2059 -5.8862 5.9086 18 1 -0.7164 -7.2697 6.0831 19 1 -1.2004 -5.0825 5.1537 20 1 0.0195 -5.2706 7.2411 21 6 4.7651 -2.8468 4.7519 22 6 6.2185 -3.1559 4.3870 23 6 7.1135 -2.5705 5.3985 24 7 7.8020 -2.1160 6.1809 25 6 2.0409 -0.7240 1.2478 26 1 1.6647 -1.7469 1.2537 27 6 1.5491 0.0072 2.4985 28 8 1.8777 -0.7598 3.6587 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8906 32 1 1.7156 -0.1864 -2.1398 33 1 1.6451 -1.7387 -1.2696 34 1 3.9678 0.2435 -1.2298 35 1 3.9400 -1.3224 -2.0764 36 1 5.1120 -1.4964 0.1088 37 1 3.6373 -2.4926 0.0832 38 1 3.7150 -0.6927 3.3276 39 1 5.1264 -1.3241 2.4460 40 1 4.1000 -5.3852 4.4702 41 1 3.2040 -5.2460 2.9384 42 1 2.7397 -7.1063 4.0778 43 1 4.6202 -1.7669 4.7833 44 1 4.5374 -3.2725 5.7292 45 1 6.3634 -4.2358 4.3557 46 1 6.4461 -2.7302 3.4097 47 1 2.0291 0.9838 2.5608 48 1 0.4683 0.1364 2.4425 49 1 1.5947 -0.3556 4.4904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305445474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:39 Heat of formation + Delta-G solvation = -78.949314 kcal Electronic energy + Delta-G solvation = -29807.090141 eV Core-core repulsion = 25961.272142 eV Total energy + Delta-G solvation = -3845.817998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.59012 -39.65449 -37.96347 -37.34227 -36.72261 -35.25533 -34.87034 -33.12714 -32.09477 -29.94660 -28.42934 -27.40685 -26.29190 -25.32144 -24.59519 -22.76821 -22.25269 -20.76772 -20.00492 -18.91871 -18.61969 -18.26799 -17.84177 -17.05996 -16.98082 -16.20228 -15.92840 -15.77237 -15.58889 -15.40027 -15.28351 -15.05827 -14.65975 -14.51357 -14.21994 -13.89343 -13.78954 -13.73373 -13.55198 -13.41759 -13.29126 -13.09544 -13.04506 -12.80024 -12.76784 -12.45812 -12.38537 -12.13382 -11.97374 -11.84743 -11.76872 -11.52988 -11.21001 -11.13962 -11.04080 -10.98327 -10.54468 -10.53884 -9.36572 -8.99197 -8.58533 -6.33050 1.50063 1.58535 1.66259 1.77159 1.78989 1.99401 2.37307 2.57724 2.95827 3.11991 3.19259 3.39864 3.81215 3.88275 3.98579 4.04563 4.08526 4.12925 4.27052 4.36520 4.39397 4.50733 4.53598 4.58173 4.64830 4.69759 4.75996 4.78351 4.86375 4.90350 4.92418 4.97039 5.02556 5.04266 5.08438 5.15298 5.19307 5.29140 5.34410 5.37115 5.60076 5.71221 5.95529 6.06848 6.16696 6.28955 6.55998 6.57217 6.84260 6.96289 7.41270 7.62367 8.75937 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.008882 B = 0.005402 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.853140 B = 5181.652104 C = 7081.972415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 H 0.092 0.908 4 C -0.115 4.115 5 C -0.107 4.107 6 C 0.036 3.964 7 N -0.498 5.498 8 C 0.034 3.966 9 C 0.496 3.504 10 O -0.587 6.587 11 N -0.593 5.593 12 C 0.250 3.750 13 C -0.600 4.600 14 H 0.046 0.954 15 C -0.034 4.034 16 N -0.939 5.939 17 Si 1.112 2.888 18 H -0.285 1.285 19 H -0.284 1.284 20 H -0.263 1.263 21 C 0.119 3.881 22 C -0.037 4.037 23 C 0.245 3.755 24 N -0.484 5.484 25 C 0.065 3.935 26 H 0.042 0.958 27 C 0.080 3.920 28 O -0.582 6.582 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.022 0.978 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.020 0.980 41 H -0.011 1.011 42 H 0.255 0.745 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 18.589 -7.638 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 H 0.110 0.890 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.092 4.092 7 N -0.220 5.220 8 C -0.097 4.097 9 C 0.286 3.714 10 O -0.469 6.469 11 N -0.324 5.324 12 C 0.127 3.873 13 C -0.639 4.639 14 H 0.065 0.935 15 C -0.232 4.232 16 N -0.577 5.577 17 Si 0.935 3.065 18 H -0.210 1.210 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.006 4.006 22 C -0.079 4.079 23 C -0.072 4.072 24 N -0.162 5.162 25 C -0.043 4.043 26 H 0.060 0.940 27 C 0.003 3.997 28 O -0.390 6.390 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.041 0.959 38 H 0.158 0.842 39 H 0.132 0.868 40 H 0.038 0.962 41 H 0.007 0.993 42 H 0.065 0.935 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.133 0.867 46 H 0.152 0.848 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.325 18.169 -6.775 19.674 hybrid contribution 0.288 -0.647 -0.389 0.808 sum 3.613 17.523 -7.164 19.272 Atomic orbital electron populations 1.21896 0.94667 1.01060 1.02875 1.21071 0.95450 0.99984 0.92775 0.89016 1.21619 0.96123 0.99456 0.98026 1.21520 0.95386 1.01657 0.95875 1.22306 0.99767 0.95999 0.91099 1.62571 1.07822 1.50298 1.01299 1.22774 1.01029 0.89838 0.96030 1.22356 0.79884 0.89070 0.80103 1.90548 1.38762 1.72965 1.44584 1.47970 1.47037 1.15169 1.22208 1.18791 0.93739 0.80412 0.94327 1.22537 1.08679 0.94952 1.37714 0.93534 1.27128 1.06203 0.91924 0.97926 1.70930 1.21333 1.27526 1.37878 0.82983 0.71755 0.75950 0.75827 1.21009 1.20987 1.18784 1.21410 0.86421 1.00465 0.92268 1.19815 0.90290 1.02908 0.94852 1.29103 0.92887 0.91994 0.93212 1.81289 1.11853 1.11391 1.11715 1.21989 0.88079 0.99447 0.94792 0.93989 1.22335 0.98790 0.94091 0.84529 1.86691 1.82378 1.52349 1.17601 0.94906 0.91645 0.90607 0.89833 0.94834 0.89869 0.90964 0.90042 0.95917 0.84225 0.86823 0.96175 0.99270 0.93541 0.87616 0.90571 0.86656 0.84807 0.91032 0.92706 0.76262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.87 71.98 0.64 -2.40 16 2 C -0.07 -1.64 2.40 -10.74 -0.03 -1.66 16 3 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.11 -2.57 5.29 30.68 0.16 -2.40 16 5 C -0.11 -2.24 6.09 30.65 0.19 -2.06 16 6 C 0.04 0.96 5.08 86.33 0.44 1.40 16 7 N -0.50 -13.02 4.69 -875.65 -4.11 -17.13 16 8 C 0.03 0.89 3.81 85.56 0.33 1.22 16 9 C 0.50 18.51 5.81 87.66 0.51 19.02 16 10 O -0.59 -28.09 11.20 -3.05 -0.03 -28.12 16 11 N -0.59 -22.20 2.46 -826.15 -2.03 -24.22 16 12 C 0.25 12.44 4.47 85.63 0.38 12.82 16 13 C -0.60 -33.52 9.39 25.60 0.24 -33.28 16 14 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 15 C -0.03 -1.96 5.46 84.65 0.46 -1.50 16 16 N -0.94 -57.68 13.65 21.45 0.29 -57.39 16 17 Si 1.11 51.15 29.90 68.60 2.05 53.20 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 21 C 0.12 3.13 5.17 86.38 0.45 3.58 16 22 C -0.04 -0.73 6.03 28.79 0.17 -0.56 16 23 C 0.25 5.54 15.44 89.43 1.38 6.92 16 24 N -0.48 -13.64 18.54 20.02 0.37 -13.27 16 25 C 0.07 1.85 1.37 44.94 0.06 1.92 16 26 H 0.04 1.71 5.43 -2.39 -0.01 1.69 16 27 C 0.08 1.89 6.11 71.98 0.44 2.33 16 28 O -0.58 -15.72 9.16 -148.98 -1.36 -17.08 16 29 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 1.21 6.31 -2.39 -0.02 1.20 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.85 8.07 -2.39 -0.02 1.83 16 37 H 0.02 0.81 5.93 -2.39 -0.01 0.80 16 38 H 0.14 3.35 4.62 -2.39 -0.01 3.34 16 39 H 0.11 2.26 7.12 -2.38 -0.02 2.24 16 40 H 0.02 1.00 7.94 -2.39 -0.02 0.98 16 41 H -0.01 -0.62 7.29 -2.39 -0.02 -0.64 16 42 H 0.26 15.75 7.22 -92.70 -0.67 15.08 16 43 H 0.11 2.22 6.44 -2.38 -0.02 2.20 16 44 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 45 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 46 H 0.13 1.94 7.22 -2.39 -0.02 1.93 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.05 1.22 6.10 -2.39 -0.01 1.21 16 49 H 0.39 7.09 9.12 -74.05 -0.68 6.41 16 Total: -1.00 -79.07 379.69 1.39 -77.68 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.39 Total: 20.99 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.82 Total: 5.34 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -5.47 Total: -112.01 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.40 Total: -45.21 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Total: -79.07 1.39 -77.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305445474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.272 kcal (2) G-P(sol) polarization free energy of solvation -79.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds