Wall clock time and date at job start Fri Apr 10 2020 18:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.53844 * 2 1 4 4 C 1.53122 * 109.50073 * 120.09725 * 2 1 3 5 5 C 1.53125 * 109.16139 * 177.59515 * 4 2 1 6 6 C 1.53034 * 109.27802 * 302.34713 * 5 4 2 7 7 N 1.46853 * 109.52626 * 59.17662 * 6 5 4 8 8 C 1.46899 * 110.99947 * 174.16167 * 7 6 5 9 9 C 1.50693 * 109.47108 * 288.73436 * 8 7 6 10 10 O 1.21280 * 120.00388 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00094 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47251 * 270.00104 * 12 11 9 14 14 H 1.08007 * 119.99910 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00262 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99686 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99942 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47007 * 60.00538 * 17 15 13 19 19 H 1.48506 * 109.46824 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47277 * 300.00107 * 17 15 13 21 21 C 1.46496 * 119.99746 * 0.02562 * 11 9 8 22 22 C 1.53004 * 109.47282 * 90.00136 * 21 11 9 23 23 C 1.47194 * 109.46948 * 179.97438 * 22 21 11 24 24 N 8.39654 * 105.58062 * 251.18485 * 2 1 3 25 25 C 1.46842 * 111.19649 * 298.25865 * 7 6 5 26 26 H 1.09004 * 109.46533 * 301.72644 * 25 7 6 27 27 C 1.53006 * 109.46155 * 181.75718 * 25 7 6 28 28 O 1.42901 * 109.46884 * 296.88832 * 27 25 7 29 29 H 1.09006 * 109.47047 * 180.09542 * 1 2 3 30 30 H 1.08995 * 109.46996 * 300.10179 * 1 2 3 31 31 H 1.09001 * 109.46759 * 60.10541 * 1 2 3 32 32 H 1.08996 * 109.52158 * 297.50153 * 4 2 1 33 33 H 1.08999 * 109.52488 * 57.62700 * 4 2 1 34 34 H 1.09002 * 109.49752 * 62.28541 * 5 4 2 35 35 H 1.08994 * 109.50432 * 182.36350 * 5 4 2 36 36 H 1.09002 * 109.46206 * 299.15925 * 6 5 4 37 37 H 1.09002 * 109.46319 * 179.19543 * 6 5 4 38 38 H 1.08994 * 109.47051 * 168.73437 * 8 7 6 39 39 H 1.08997 * 109.47074 * 48.73655 * 8 7 6 40 40 H 1.09006 * 109.47396 * 29.99797 * 12 11 9 41 41 H 1.08995 * 109.47179 * 150.00083 * 12 11 9 42 42 H 0.96999 * 119.99865 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.47077 * 209.99591 * 21 11 9 44 44 H 1.08996 * 109.47200 * 330.00048 * 21 11 9 45 45 H 1.09007 * 109.46611 * 299.99702 * 22 21 11 46 46 H 1.08992 * 109.47325 * 59.99395 * 22 21 11 47 47 H 1.08994 * 109.47161 * 56.89041 * 27 25 7 48 48 H 1.09006 * 109.46805 * 176.88935 * 27 25 7 49 49 H 0.96694 * 113.99471 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7238 1.2488 5 6 3.5712 -0.7720 1.2109 6 6 4.0229 -1.4730 -0.0722 7 7 3.5093 -0.7422 -1.2378 8 6 4.0373 -1.3060 -2.4873 9 6 5.5009 -0.9694 -2.6113 10 8 6.0503 -0.3237 -1.7439 11 7 6.1996 -1.3857 -3.6860 12 6 7.6223 -1.0580 -3.8068 13 6 7.7757 0.2548 -4.5307 14 1 6.9008 0.7916 -4.8668 15 6 9.0328 0.7713 -4.7630 16 7 10.0981 0.1179 -4.3533 17 14 9.2229 2.3982 -5.6609 18 1 8.5309 3.4682 -4.8984 19 1 10.6651 2.7305 -5.7833 20 1 8.6240 2.2891 -7.0154 21 6 5.5359 -2.1651 -4.7340 22 6 4.9663 -1.2171 -5.7913 23 6 4.3000 -2.0003 -6.8445 24 7 3.7853 -2.6085 -7.6558 25 6 2.0410 -0.7235 -1.2480 26 1 1.6648 -1.7466 -1.2543 27 6 1.5492 0.0080 -2.4986 28 8 1.9820 1.3692 -2.4553 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3633 0.5154 0.8890 31 1 -0.3633 0.5122 -0.8910 32 1 1.7156 -0.1870 2.1398 33 1 1.6443 -1.7388 1.2696 34 1 3.9677 0.2432 1.2299 35 1 3.9395 -1.3228 2.0763 36 1 3.6375 -2.4926 -0.0841 37 1 5.1121 -1.4963 -0.1092 38 1 3.4947 -0.8850 -3.3337 39 1 3.9130 -2.3888 -2.4783 40 1 8.0625 -0.9783 -2.8128 41 1 8.1298 -1.8432 -4.3671 42 1 10.9825 0.4813 -4.5164 43 1 6.2573 -2.8368 -5.1992 44 1 4.7265 -2.7486 -4.2954 45 1 4.2448 -0.5454 -5.3261 46 1 5.7757 -0.6336 -6.2299 47 1 1.9574 -0.4750 -3.3863 48 1 0.4603 -0.0260 -2.5348 49 1 1.7050 1.8944 -3.2185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305445475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:42 Heat of formation + Delta-G solvation = -52.579504 kcal Electronic energy + Delta-G solvation = -29099.879932 eV Core-core repulsion = 25255.205414 eV Total energy + Delta-G solvation = -3844.674517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09844 -38.70125 -36.75935 -36.27328 -35.17482 -34.17066 -32.78369 -32.23377 -30.72559 -28.75934 -27.47257 -26.43641 -25.57150 -23.85752 -23.04911 -21.57978 -21.22806 -19.63720 -18.44277 -17.55854 -17.26562 -16.81657 -16.23760 -15.88731 -15.59603 -15.22136 -14.80510 -14.59969 -14.52011 -14.27211 -14.09044 -13.64596 -13.42436 -13.23570 -12.99234 -12.81722 -12.75663 -12.40105 -12.36973 -12.33673 -12.24683 -11.81966 -11.73479 -11.51491 -11.42038 -11.22859 -10.98501 -10.93848 -10.80014 -10.62834 -10.56729 -10.38684 -10.13579 -10.06817 -9.80858 -9.62822 -8.90427 -8.44038 -8.03978 -7.77339 -6.05847 -4.10552 2.80130 2.89146 3.31276 3.36299 3.37167 3.43385 3.55687 3.97839 4.25206 4.32015 4.45970 4.64475 4.68563 4.87036 4.99648 5.00722 5.19338 5.20419 5.22978 5.26501 5.28704 5.30325 5.36980 5.39211 5.48758 5.52817 5.55349 5.64826 5.68209 5.76400 5.77379 5.94340 5.95678 6.01744 6.09423 6.18764 6.28994 6.33402 6.52204 6.93770 7.18723 7.24678 7.42547 7.49336 7.65838 7.68376 7.90183 8.20301 8.33955 8.88947 9.09818 9.55047 11.02265 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.004057 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.187934 B = 6900.337548 C = 7872.579852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.114 4.114 6 C 0.057 3.943 7 N -0.502 5.502 8 C 0.028 3.972 9 C 0.511 3.489 10 O -0.509 6.509 11 N -0.603 5.603 12 C 0.247 3.753 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.064 3.936 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.124 3.876 22 C -0.054 4.054 23 C 0.219 3.781 24 N -0.454 5.454 25 C 0.093 3.907 26 H 0.047 0.953 27 C 0.076 3.924 28 O -0.547 6.547 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.022 0.978 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.264 0.736 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.103 0.897 46 H 0.132 0.868 47 H 0.045 0.955 48 H 0.048 0.952 49 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.428 -3.840 6.032 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.071 4.071 7 N -0.227 5.227 8 C -0.103 4.103 9 C 0.296 3.704 10 O -0.383 6.383 11 N -0.336 5.336 12 C 0.128 3.872 13 C -0.566 4.566 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.002 4.002 22 C -0.095 4.095 23 C -0.099 4.099 24 N -0.131 5.131 25 C -0.016 4.016 26 H 0.065 0.935 27 C -0.002 4.002 28 O -0.351 6.351 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.149 0.851 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -18.227 -4.112 5.929 19.603 hybrid contribution -0.152 0.459 -1.049 1.155 sum -18.379 -3.653 4.881 19.364 Atomic orbital electron populations 1.21862 0.95422 1.01242 1.01828 1.21071 0.94423 1.01368 0.92972 0.89056 1.21675 0.96153 0.99910 0.97634 1.21539 0.95047 1.02219 0.96417 1.22184 1.01777 0.93351 0.89781 1.61412 1.05806 1.54440 1.01004 1.22222 0.95591 0.97892 0.94572 1.20126 0.87630 0.80215 0.82402 1.90679 1.70396 1.37279 1.39967 1.48246 1.12899 1.53488 1.18956 1.19319 0.73444 0.95821 0.98632 1.21390 0.92342 1.05865 1.36968 0.92212 1.24911 0.95788 0.97353 0.95834 1.69911 0.98112 1.38866 1.46348 0.86626 0.77037 0.84206 0.79971 1.20094 1.21308 1.20265 1.21228 0.97628 0.92741 0.88651 1.20026 1.00891 0.97283 0.91316 1.29371 0.92922 0.93547 0.94061 1.81231 1.10676 1.10055 1.11180 1.21720 0.88074 0.96707 0.95063 0.93547 1.22359 0.96998 0.83949 0.96915 1.86680 1.79774 1.20911 1.47739 0.93194 0.92577 0.92505 0.91988 0.92711 0.90614 0.91838 0.95972 0.89023 0.88211 0.92942 0.93722 0.94943 0.92669 0.89535 0.91266 0.87882 0.85064 0.93705 0.93363 0.78259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.87 37.16 0.33 -0.89 16 2 C -0.08 -0.85 2.24 -90.54 -0.20 -1.06 16 3 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 4 C -0.12 -1.19 5.29 -26.60 -0.14 -1.33 16 5 C -0.11 -1.40 6.09 -26.65 -0.16 -1.56 16 6 C 0.06 0.78 5.11 -3.83 -0.02 0.77 16 7 N -0.50 -7.16 4.05 -228.12 -0.92 -8.09 16 8 C 0.03 0.39 3.81 -4.98 -0.02 0.37 16 9 C 0.51 9.58 7.36 -10.99 -0.08 9.49 16 10 O -0.51 -12.00 14.37 5.56 0.08 -11.92 16 11 N -0.60 -11.04 2.46 -175.07 -0.43 -11.47 16 12 C 0.25 5.83 5.20 -5.19 -0.03 5.81 16 13 C -0.53 -13.58 8.92 -34.44 -0.31 -13.89 16 14 H 0.06 1.50 7.42 -52.48 -0.39 1.11 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 17 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 C 0.12 1.66 5.21 -4.04 -0.02 1.63 16 22 C -0.05 -0.66 6.03 -29.52 -0.18 -0.84 16 23 C 0.22 2.84 15.44 -20.73 -0.32 2.52 16 24 N -0.45 -6.91 18.54 42.20 0.78 -6.13 16 25 C 0.09 1.05 1.75 -67.72 -0.12 0.93 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 C 0.08 0.75 5.87 37.16 0.22 0.97 16 28 O -0.55 -6.42 12.76 -35.23 -0.45 -6.87 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.46 6.52 -51.93 -0.34 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 1.53 6.29 -51.93 -0.33 1.21 16 38 H 0.10 1.21 4.39 -51.93 -0.23 0.98 16 39 H 0.05 0.62 7.32 -51.93 -0.38 0.24 16 40 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 41 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 44 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 45 H 0.10 1.11 7.22 -51.93 -0.38 0.74 16 46 H 0.13 1.87 7.25 -51.93 -0.38 1.49 16 47 H 0.05 0.42 5.83 -51.93 -0.30 0.11 16 48 H 0.05 0.38 6.62 -51.93 -0.34 0.04 16 49 H 0.37 2.80 9.12 45.56 0.42 3.22 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -33.30 387.63 -7.63 -40.93 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.10 Total: 1.96 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.15 Total: 4.55 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.16 Total: -50.38 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.37 Total: -18.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.30 -7.63 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305445475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.652 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds