Wall clock time and date at job start Fri Apr 10 2020 18:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.53844 * 2 1 4 4 C 1.53122 * 109.50073 * 120.09725 * 2 1 3 5 5 C 1.53125 * 109.16139 * 177.59515 * 4 2 1 6 6 C 1.53034 * 109.27802 * 302.34713 * 5 4 2 7 7 N 1.46853 * 109.52626 * 59.17662 * 6 5 4 8 8 C 1.46899 * 110.99947 * 174.16167 * 7 6 5 9 9 C 1.50693 * 109.47108 * 288.73436 * 8 7 6 10 10 O 1.21280 * 120.00388 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00067 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00094 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47251 * 270.00104 * 12 11 9 14 14 H 1.08007 * 119.99910 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00262 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99686 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99942 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47007 * 60.00538 * 17 15 13 19 19 H 1.48506 * 109.46824 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47277 * 300.00107 * 17 15 13 21 21 C 1.46496 * 119.99746 * 0.02562 * 11 9 8 22 22 C 1.53004 * 109.47282 * 90.00136 * 21 11 9 23 23 C 1.47194 * 109.46948 * 179.97438 * 22 21 11 24 24 N 8.39654 * 105.58062 * 251.18485 * 2 1 3 25 25 C 1.46842 * 111.19649 * 298.25865 * 7 6 5 26 26 H 1.09004 * 109.46533 * 301.72644 * 25 7 6 27 27 C 1.53006 * 109.46155 * 181.75718 * 25 7 6 28 28 O 1.42901 * 109.46884 * 296.88832 * 27 25 7 29 29 H 1.09006 * 109.47047 * 180.09542 * 1 2 3 30 30 H 1.08995 * 109.46996 * 300.10179 * 1 2 3 31 31 H 1.09001 * 109.46759 * 60.10541 * 1 2 3 32 32 H 1.08996 * 109.52158 * 297.50153 * 4 2 1 33 33 H 1.08999 * 109.52488 * 57.62700 * 4 2 1 34 34 H 1.09002 * 109.49752 * 62.28541 * 5 4 2 35 35 H 1.08994 * 109.50432 * 182.36350 * 5 4 2 36 36 H 1.09002 * 109.46206 * 299.15925 * 6 5 4 37 37 H 1.09002 * 109.46319 * 179.19543 * 6 5 4 38 38 H 1.08994 * 109.47051 * 168.73437 * 8 7 6 39 39 H 1.08997 * 109.47074 * 48.73655 * 8 7 6 40 40 H 1.09006 * 109.47396 * 29.99797 * 12 11 9 41 41 H 1.08995 * 109.47179 * 150.00083 * 12 11 9 42 42 H 0.96999 * 119.99865 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.47077 * 209.99591 * 21 11 9 44 44 H 1.08996 * 109.47200 * 330.00048 * 21 11 9 45 45 H 1.09007 * 109.46611 * 299.99702 * 22 21 11 46 46 H 1.08992 * 109.47325 * 59.99395 * 22 21 11 47 47 H 1.08994 * 109.47161 * 56.89041 * 27 25 7 48 48 H 1.09006 * 109.46805 * 176.88935 * 27 25 7 49 49 H 0.96694 * 113.99471 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7238 1.2488 5 6 3.5712 -0.7720 1.2109 6 6 4.0229 -1.4730 -0.0722 7 7 3.5093 -0.7422 -1.2378 8 6 4.0373 -1.3060 -2.4873 9 6 5.5009 -0.9694 -2.6113 10 8 6.0503 -0.3237 -1.7439 11 7 6.1996 -1.3857 -3.6860 12 6 7.6223 -1.0580 -3.8068 13 6 7.7757 0.2548 -4.5307 14 1 6.9008 0.7916 -4.8668 15 6 9.0328 0.7713 -4.7630 16 7 10.0981 0.1179 -4.3533 17 14 9.2229 2.3982 -5.6609 18 1 8.5309 3.4682 -4.8984 19 1 10.6651 2.7305 -5.7833 20 1 8.6240 2.2891 -7.0154 21 6 5.5359 -2.1651 -4.7340 22 6 4.9663 -1.2171 -5.7913 23 6 4.3000 -2.0003 -6.8445 24 7 3.7853 -2.6085 -7.6558 25 6 2.0410 -0.7235 -1.2480 26 1 1.6648 -1.7466 -1.2543 27 6 1.5492 0.0080 -2.4986 28 8 1.9820 1.3692 -2.4553 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3633 0.5154 0.8890 31 1 -0.3633 0.5122 -0.8910 32 1 1.7156 -0.1870 2.1398 33 1 1.6443 -1.7388 1.2696 34 1 3.9677 0.2432 1.2299 35 1 3.9395 -1.3228 2.0763 36 1 3.6375 -2.4926 -0.0841 37 1 5.1121 -1.4963 -0.1092 38 1 3.4947 -0.8850 -3.3337 39 1 3.9130 -2.3888 -2.4783 40 1 8.0625 -0.9783 -2.8128 41 1 8.1298 -1.8432 -4.3671 42 1 10.9825 0.4813 -4.5164 43 1 6.2573 -2.8368 -5.1992 44 1 4.7265 -2.7486 -4.2954 45 1 4.2448 -0.5454 -5.3261 46 1 5.7757 -0.6336 -6.2299 47 1 1.9574 -0.4750 -3.3863 48 1 0.4603 -0.0260 -2.5348 49 1 1.7050 1.8944 -3.2185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305445475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:41 Heat of formation + Delta-G solvation = -76.772776 kcal Electronic energy + Delta-G solvation = -29100.929031 eV Core-core repulsion = 25255.205414 eV Total energy + Delta-G solvation = -3845.723616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22426 -39.93511 -37.93848 -37.12206 -36.59504 -35.22112 -34.67934 -33.13443 -32.07744 -30.13298 -28.60511 -27.68128 -26.46926 -25.13456 -24.66022 -22.70614 -22.12914 -20.50441 -19.80898 -18.96288 -18.14660 -18.04204 -17.89108 -17.16356 -16.69432 -16.49632 -16.05864 -15.91831 -15.51036 -15.42961 -15.25820 -14.84476 -14.60212 -14.20737 -14.08686 -13.98543 -13.86401 -13.62910 -13.59750 -13.50036 -13.18153 -13.04899 -12.98364 -12.77950 -12.71593 -12.47560 -12.44796 -12.36349 -12.13722 -11.87196 -11.76168 -11.57304 -11.46268 -11.32482 -10.87864 -10.57768 -10.52579 -10.39063 -9.41376 -9.04123 -8.11919 -6.23450 1.43906 1.47942 1.53397 1.69800 1.84289 2.02102 2.25078 2.47964 2.93564 3.19723 3.20427 3.53542 3.79141 3.88187 3.91536 4.00133 4.03729 4.18540 4.21788 4.33409 4.36012 4.42095 4.47694 4.56005 4.59672 4.69781 4.72569 4.78404 4.86573 4.88614 4.95719 4.97414 5.04800 5.11732 5.16914 5.17780 5.32986 5.37459 5.39350 5.44911 5.65099 5.69209 5.93365 6.14194 6.18259 6.31951 6.61250 6.83619 6.89458 7.09890 7.42312 7.65125 8.95236 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.004057 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.187934 B = 6900.337548 C = 7872.579852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 H 0.057 0.943 4 C -0.110 4.110 5 C -0.113 4.113 6 C 0.059 3.941 7 N -0.529 5.529 8 C 0.040 3.960 9 C 0.504 3.496 10 O -0.569 6.569 11 N -0.602 5.602 12 C 0.262 3.738 13 C -0.528 4.528 14 H 0.067 0.933 15 C 0.009 3.991 16 N -0.932 5.932 17 Si 0.955 3.045 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.257 1.257 21 C 0.119 3.881 22 C -0.042 4.042 23 C 0.247 3.753 24 N -0.487 5.487 25 C 0.089 3.911 26 H 0.068 0.932 27 C 0.073 3.927 28 O -0.577 6.577 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.125 0.875 39 H 0.083 0.917 40 H -0.005 1.005 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.114 0.886 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.823 -4.472 5.001 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.069 4.069 7 N -0.255 5.255 8 C -0.090 4.090 9 C 0.292 3.708 10 O -0.447 6.447 11 N -0.334 5.334 12 C 0.140 3.860 13 C -0.566 4.566 14 H 0.085 0.915 15 C -0.190 4.190 16 N -0.572 5.572 17 Si 0.781 3.219 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.182 1.182 21 C -0.006 4.006 22 C -0.083 4.083 23 C -0.070 4.070 24 N -0.165 5.165 25 C -0.019 4.019 26 H 0.085 0.915 27 C -0.005 4.005 28 O -0.383 6.383 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.013 0.987 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.144 0.856 46 H 0.132 0.868 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -21.678 -4.765 4.852 22.720 hybrid contribution 0.921 0.646 -0.670 1.309 sum -20.757 -4.119 4.182 21.571 Atomic orbital electron populations 1.21800 0.93204 1.02345 1.02279 1.21027 0.96140 0.99420 0.93134 0.92405 1.21645 0.94113 1.01034 0.97964 1.21512 0.96936 1.00333 0.96309 1.22072 0.99503 0.94676 0.90621 1.61316 1.08025 1.55212 1.00910 1.22160 0.91494 0.99766 0.95578 1.21118 0.89632 0.78856 0.81174 1.90658 1.72034 1.40051 1.41993 1.48125 1.11063 1.53817 1.20441 1.18764 0.76749 0.95139 0.95315 1.21745 0.92445 1.06446 1.36014 0.91513 1.25746 0.95728 1.00632 0.96867 1.70044 0.98497 1.40616 1.48039 0.85650 0.76801 0.79902 0.79571 1.20584 1.21450 1.18151 1.21517 0.98587 0.92602 0.87893 1.19873 1.00810 0.96933 0.90697 1.29180 0.91897 0.92574 0.93340 1.81280 1.12025 1.11097 1.12093 1.21898 0.85883 0.98077 0.96048 0.91454 1.22494 0.98531 0.83045 0.96435 1.86649 1.80416 1.22146 1.49139 0.91641 0.92232 0.92078 0.91167 0.90891 0.93756 0.90727 0.93898 0.93007 0.85785 0.89911 0.98661 0.95589 0.92849 0.89404 0.87286 0.85555 0.86775 0.92624 0.90788 0.76459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.87 71.98 0.64 -1.23 16 2 C -0.08 -1.53 2.24 -10.74 -0.02 -1.55 16 3 H 0.06 1.52 7.58 -2.39 -0.02 1.51 16 4 C -0.11 -2.05 5.29 30.68 0.16 -1.88 16 5 C -0.11 -2.77 6.09 30.65 0.19 -2.58 16 6 C 0.06 1.62 5.11 86.32 0.44 2.06 16 7 N -0.53 -14.41 4.05 -875.65 -3.55 -17.95 16 8 C 0.04 1.02 3.81 85.56 0.33 1.35 16 9 C 0.50 18.90 7.36 87.65 0.64 19.54 16 10 O -0.57 -28.19 14.37 -3.03 -0.04 -28.23 16 11 N -0.60 -21.91 2.46 -826.17 -2.03 -23.94 16 12 C 0.26 12.83 5.20 85.63 0.45 13.27 16 13 C -0.53 -27.64 8.92 25.60 0.23 -27.42 16 14 H 0.07 3.32 7.42 -2.91 -0.02 3.30 16 15 C 0.01 0.49 5.46 84.66 0.46 0.95 16 16 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 17 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 21 C 0.12 2.88 5.21 86.38 0.45 3.33 16 22 C -0.04 -0.91 6.03 28.79 0.17 -0.74 16 23 C 0.25 5.70 15.44 89.43 1.38 7.08 16 24 N -0.49 -13.62 18.54 20.02 0.37 -13.25 16 25 C 0.09 1.73 1.75 44.94 0.08 1.81 16 26 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 27 C 0.07 1.19 5.87 71.98 0.42 1.61 16 28 O -0.58 -12.43 12.76 -148.98 -1.90 -14.34 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.78 6.52 -2.39 -0.02 0.76 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 1.83 6.29 -2.39 -0.02 1.81 16 38 H 0.12 2.52 4.39 -2.39 -0.01 2.51 16 39 H 0.08 1.62 7.32 -2.39 -0.02 1.60 16 40 H 0.00 -0.28 7.42 -2.38 -0.02 -0.30 16 41 H 0.03 1.30 7.89 -2.39 -0.02 1.28 16 42 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.09 2.15 7.89 -2.39 -0.02 2.13 16 44 H 0.11 1.84 6.44 -2.39 -0.02 1.82 16 45 H 0.13 2.23 7.22 -2.38 -0.02 2.21 16 46 H 0.11 3.03 7.25 -2.39 -0.02 3.01 16 47 H 0.06 0.77 5.83 -2.39 -0.01 0.76 16 48 H 0.07 0.84 6.62 -2.38 -0.02 0.82 16 49 H 0.39 5.04 9.12 -74.06 -0.68 4.36 16 Total: -1.00 -77.06 387.63 1.46 -75.59 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.29 Total: 15.68 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.02 Total: 15.60 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.92 Total: -109.54 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.95 Total: -42.57 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -77.06 1.46 -75.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305445475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.179 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds