Wall clock time and date at job start Fri Apr 10 2020 18:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.50445 * 2 1 4 4 C 1.53125 * 109.50369 * 239.91467 * 2 1 3 5 5 C 1.53119 * 109.16188 * 297.63730 * 4 2 1 6 6 C 1.53033 * 109.31009 * 302.40407 * 5 4 2 7 7 N 1.46856 * 109.52420 * 59.15887 * 6 5 4 8 8 C 1.46897 * 110.99893 * 174.16383 * 7 6 5 9 9 C 1.50691 * 109.47791 * 63.84496 * 8 7 6 10 10 O 1.21284 * 119.99624 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00482 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00138 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.46989 * 90.00003 * 12 11 9 14 14 H 1.07998 * 120.00022 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00069 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00015 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99889 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47189 * 89.99970 * 17 15 13 19 19 H 1.48506 * 109.47077 * 210.00129 * 17 15 13 20 20 H 1.48497 * 109.47129 * 329.99772 * 17 15 13 21 21 C 1.46500 * 119.99822 * 0.02562 * 11 9 8 22 22 C 1.52997 * 109.47238 * 89.99458 * 21 11 9 23 23 C 1.47196 * 109.47333 * 180.02562 * 22 21 11 24 24 N 9.05288 * 89.12887 * 136.69077 * 2 1 3 25 25 C 1.46847 * 111.19683 * 298.25714 * 7 6 5 26 26 H 1.09007 * 109.46117 * 301.72830 * 25 7 6 27 27 C 1.52993 * 109.46396 * 181.74927 * 25 7 6 28 28 O 1.42900 * 109.47435 * 185.02538 * 27 25 7 29 29 H 1.08998 * 109.46962 * 299.92254 * 1 2 3 30 30 H 1.09001 * 109.47067 * 59.92355 * 1 2 3 31 31 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.49285 * 177.75199 * 4 2 1 33 33 H 1.08997 * 109.55231 * 57.56328 * 4 2 1 34 34 H 1.08998 * 109.50304 * 182.44264 * 5 4 2 35 35 H 1.09005 * 109.49848 * 62.36240 * 5 4 2 36 36 H 1.08997 * 109.46263 * 179.16985 * 6 5 4 37 37 H 1.09005 * 109.46348 * 299.15507 * 6 5 4 38 38 H 1.08998 * 109.47108 * 183.84892 * 8 7 6 39 39 H 1.09003 * 109.47064 * 303.84343 * 8 7 6 40 40 H 1.08999 * 109.47278 * 210.00204 * 12 11 9 41 41 H 1.09001 * 109.47492 * 330.00594 * 12 11 9 42 42 H 0.96996 * 120.00100 * 179.97438 * 16 15 13 43 43 H 1.08994 * 109.46928 * 209.99736 * 21 11 9 44 44 H 1.09005 * 109.46798 * 329.99620 * 21 11 9 45 45 H 1.08999 * 109.47589 * 300.00406 * 22 21 11 46 46 H 1.09001 * 109.46749 * 59.99979 * 22 21 11 47 47 H 1.09009 * 109.47000 * 305.02262 * 27 25 7 48 48 H 1.08997 * 109.47236 * 65.01708 * 27 25 7 49 49 H 0.96704 * 113.99631 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7236 -1.2489 5 6 1.5766 -2.1820 -1.2104 6 6 2.0861 -2.8417 0.0730 7 7 1.5683 -2.1133 1.2383 8 6 1.9230 -2.7989 2.4880 9 6 3.4213 -2.8068 2.6490 10 8 4.1244 -2.2915 1.8058 11 7 3.9800 -3.3856 3.7304 12 6 5.4366 -3.3938 3.8865 13 6 5.8683 -2.1602 4.6368 14 1 5.1313 -1.4422 4.9649 15 6 7.2040 -1.9487 4.9053 16 7 7.5807 -0.8723 5.5605 17 14 8.4787 -3.1909 4.3384 18 1 8.9505 -2.8300 2.9775 19 1 9.6281 -3.1849 5.2787 20 1 7.8708 -4.5454 4.3086 21 6 3.1306 -4.0076 4.7492 22 6 2.9047 -5.4790 4.3960 23 6 2.0508 -6.1038 5.4193 24 7 1.3924 -6.5867 6.2090 25 6 2.0409 -0.7230 1.2484 26 1 3.1309 -0.7100 1.2551 27 6 1.5150 -0.0148 2.4984 28 8 1.8760 1.3670 2.4505 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1305 -0.6887 -1.2692 33 1 1.6437 -0.2380 -2.1402 34 1 1.9738 -2.7135 -2.0752 35 1 0.4873 -2.2175 -1.2301 36 1 1.7444 -3.8760 0.1101 37 1 3.1759 -2.8185 0.0854 38 1 1.4699 -2.2764 3.3304 39 1 1.5556 -3.8247 2.4566 40 1 5.7374 -4.2814 4.4430 41 1 5.9074 -3.4044 2.9035 42 1 8.5203 -0.7237 5.7497 43 1 3.6189 -3.9380 5.7211 44 1 2.1711 -3.4916 4.7867 45 1 2.4165 -5.5486 3.4240 46 1 3.8642 -5.9950 4.3584 47 1 0.4294 -0.1055 2.5378 48 1 1.9502 -0.4736 3.3862 49 1 1.5739 1.8791 3.2133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305445476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:44 Heat of formation + Delta-G solvation = -74.327498 kcal Electronic energy + Delta-G solvation = -29489.627588 eV Core-core repulsion = 25644.010007 eV Total energy + Delta-G solvation = -3845.617581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70885 -39.82089 -37.98189 -37.38688 -36.71212 -35.12705 -34.68389 -32.85216 -32.32168 -30.40516 -28.64117 -27.81408 -26.50827 -25.22755 -24.47031 -23.17890 -22.28602 -20.10752 -19.44541 -19.17549 -18.51672 -18.39251 -17.88436 -17.27963 -16.70991 -16.52107 -16.17121 -15.86140 -15.71183 -15.49195 -15.39912 -14.90884 -14.64650 -14.55855 -14.23056 -14.01597 -13.85758 -13.78003 -13.64679 -13.54326 -13.35000 -13.14914 -12.89843 -12.74874 -12.61914 -12.42054 -12.38737 -12.13586 -12.00843 -11.86576 -11.75191 -11.68183 -11.46521 -11.19210 -11.10617 -10.92286 -10.79667 -10.70985 -9.42245 -9.04282 -8.30358 -6.34563 1.34651 1.38834 1.46024 1.69028 1.84601 1.87820 2.30968 2.33434 2.75095 3.04981 3.17128 3.55652 3.76923 3.90166 3.94798 4.00757 4.10487 4.12805 4.20887 4.37386 4.38264 4.44661 4.56889 4.59458 4.60604 4.68211 4.79051 4.81362 4.86971 4.88502 4.98869 4.99966 5.04892 5.10821 5.15210 5.16266 5.22322 5.36085 5.38211 5.50522 5.52336 5.63762 5.71084 6.00091 6.11570 6.27277 6.63686 6.68215 6.71805 6.87897 7.26268 7.46602 8.86651 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009514 B = 0.004846 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.211843 B = 5776.605203 C = 7234.075839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 H 0.052 0.948 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.039 3.961 7 N -0.488 5.488 8 C 0.028 3.972 9 C 0.471 3.529 10 O -0.574 6.574 11 N -0.594 5.594 12 C 0.223 3.777 13 C -0.529 4.529 14 H 0.026 0.974 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.943 3.057 18 H -0.281 1.281 19 H -0.283 1.283 20 H -0.227 1.227 21 C 0.111 3.889 22 C -0.036 4.036 23 C 0.245 3.755 24 N -0.491 5.491 25 C 0.073 3.927 26 H 0.036 0.964 27 C 0.085 3.915 28 O -0.589 6.589 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.032 0.968 38 H 0.116 0.884 39 H 0.145 0.855 40 H 0.057 0.943 41 H 0.021 0.979 42 H 0.265 0.735 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.142 0.858 46 H 0.126 0.874 47 H 0.079 0.921 48 H 0.025 0.975 49 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.637 -6.738 -10.429 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.089 4.089 7 N -0.211 5.211 8 C -0.103 4.103 9 C 0.260 3.740 10 O -0.454 6.454 11 N -0.325 5.325 12 C 0.100 3.900 13 C -0.568 4.568 14 H 0.045 0.955 15 C -0.189 4.189 16 N -0.590 5.590 17 Si 0.767 3.233 18 H -0.208 1.208 19 H -0.209 1.209 20 H -0.149 1.149 21 C -0.014 4.014 22 C -0.077 4.077 23 C -0.072 4.072 24 N -0.169 5.169 25 C -0.035 4.035 26 H 0.054 0.946 27 C 0.007 3.993 28 O -0.396 6.396 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.133 0.867 39 H 0.162 0.838 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.122 0.878 45 H 0.159 0.841 46 H 0.144 0.856 47 H 0.097 0.903 48 H 0.044 0.956 49 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -17.366 -7.277 -10.218 21.423 hybrid contribution 2.454 0.753 0.723 2.667 sum -14.912 -6.524 -9.495 18.844 Atomic orbital electron populations 1.21705 0.92961 1.02761 1.01023 1.20984 0.97699 0.97616 0.93017 0.92906 1.21622 0.99103 0.97044 0.97777 1.21559 1.02146 0.94436 0.96299 1.22351 0.98437 0.98053 0.90009 1.62446 1.56306 1.00751 1.01642 1.22729 0.88173 1.04147 0.95270 1.22672 0.93103 0.77322 0.80942 1.90623 1.65573 1.45765 1.43462 1.48039 1.07223 1.55528 1.21694 1.19344 0.78601 0.95969 0.96040 1.21593 0.92804 1.06993 1.35371 0.95519 1.25852 1.00932 0.97433 0.94717 1.70064 1.17231 1.29123 1.42605 0.85783 0.78621 0.81157 0.77783 1.20751 1.20882 1.14920 1.21537 0.96240 0.91478 0.92149 1.19840 0.98869 0.94321 0.94640 1.29171 0.92486 0.92319 0.93251 1.81270 1.12540 1.11085 1.12000 1.21645 0.98096 0.88559 0.95212 0.94585 1.22198 0.99374 0.81565 0.96181 1.86412 1.82365 1.21160 1.49663 0.93194 0.92713 0.90700 0.94948 0.90568 0.90726 0.89541 0.88589 0.94983 0.86652 0.83761 0.92503 0.96125 0.92599 0.90084 0.87831 0.84069 0.85610 0.90329 0.95637 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.38 71.98 0.60 -1.93 16 2 C -0.07 -1.94 2.53 -10.74 -0.03 -1.97 16 3 H 0.05 1.61 7.59 -2.39 -0.02 1.59 16 4 C -0.12 -2.83 5.51 30.68 0.17 -2.66 16 5 C -0.11 -2.11 5.74 30.65 0.18 -1.93 16 6 C 0.04 0.90 5.07 86.32 0.44 1.33 16 7 N -0.49 -11.45 3.98 -875.65 -3.48 -14.94 16 8 C 0.03 0.61 3.88 85.55 0.33 0.94 16 9 C 0.47 15.45 7.03 87.65 0.62 16.07 16 10 O -0.57 -24.88 11.19 -3.04 -0.03 -24.91 16 11 N -0.59 -19.21 2.46 -826.17 -2.03 -21.24 16 12 C 0.22 9.46 4.23 85.63 0.36 9.83 16 13 C -0.53 -29.17 9.94 25.60 0.25 -28.91 16 14 H 0.03 1.67 8.06 -2.91 -0.02 1.64 16 15 C 0.01 0.46 5.47 84.65 0.46 0.93 16 16 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 17 Si 0.94 42.61 27.47 68.60 1.88 44.49 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.23 -8.73 6.54 99.48 0.65 -8.08 16 21 C 0.11 2.39 5.17 86.38 0.45 2.83 16 22 C -0.04 -0.49 6.03 28.79 0.17 -0.32 16 23 C 0.25 4.59 15.43 89.44 1.38 5.97 16 24 N -0.49 -12.51 18.54 20.00 0.37 -12.14 16 25 C 0.07 2.19 1.46 44.94 0.07 2.26 16 26 H 0.04 1.51 5.53 -2.38 -0.01 1.49 16 27 C 0.08 2.32 5.40 71.98 0.39 2.71 16 28 O -0.59 -17.32 12.79 -148.98 -1.91 -19.22 16 29 H 0.05 0.99 6.53 -2.39 -0.02 0.98 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.38 6.01 -2.39 -0.01 1.36 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.43 6.59 -2.38 -0.02 1.41 16 36 H 0.10 1.67 8.09 -2.39 -0.02 1.65 16 37 H 0.03 1.01 5.82 -2.38 -0.01 0.99 16 38 H 0.12 2.23 5.56 -2.39 -0.01 2.22 16 39 H 0.14 1.85 7.15 -2.39 -0.02 1.83 16 40 H 0.06 2.13 7.13 -2.39 -0.02 2.12 16 41 H 0.02 0.96 6.85 -2.39 -0.02 0.94 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.08 2.04 8.07 -2.39 -0.02 2.02 16 44 H 0.10 1.73 6.44 -2.38 -0.02 1.71 16 45 H 0.14 1.10 7.22 -2.39 -0.02 1.08 16 46 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.08 1.69 6.70 -2.38 -0.02 1.68 16 48 H 0.03 0.76 6.58 -2.39 -0.02 0.75 16 49 H 0.39 7.87 9.12 -74.05 -0.68 7.20 16 Total: -1.00 -81.55 376.46 1.18 -80.37 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.24 Total: 21.40 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.84 Total: 5.13 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -4.84 Total: -107.26 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.94 Total: -44.14 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Total: -81.55 1.18 -80.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305445476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.043 kcal (2) G-P(sol) polarization free energy of solvation -81.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds