Wall clock time and date at job start Fri Apr 10 2020 18:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.78619 * 2 1 4 4 C 1.54939 * 110.72533 * 123.24766 * 2 1 3 5 5 N 1.48536 * 103.22729 * 155.77256 * 4 2 1 6 6 C 1.46904 * 110.99852 * 200.28039 * 5 4 2 7 7 C 1.52992 * 117.49628 * 223.53745 * 6 5 4 8 8 C 1.52997 * 117.49731 * 292.19780 * 6 5 4 9 9 C 1.47907 * 105.82037 * 320.79389 * 5 4 2 10 10 C 1.53994 * 107.05548 * 25.33185 * 9 5 4 11 11 H 1.08995 * 110.39196 * 117.73658 * 10 9 5 12 12 N 1.46505 * 110.30682 * 239.85615 * 10 9 5 13 13 C 1.34776 * 120.00203 * 266.07628 * 12 10 9 14 14 O 1.21353 * 119.99904 * 359.97438 * 13 12 10 15 15 C 1.49449 * 120.00015 * 179.97438 * 13 12 10 16 16 O 1.21353 * 119.99984 * 0.02562 * 15 13 12 17 17 N 1.34774 * 120.00001 * 179.97438 * 15 13 12 18 18 C 1.46505 * 120.00188 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47008 * 180.02562 * 18 17 15 20 20 C 1.53009 * 109.47051 * 179.97438 * 19 18 17 21 21 C 1.50692 * 109.47009 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.37887 * 119.99777 * 179.97438 * 21 20 19 24 24 N 1.31507 * 119.99737 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46760 * 89.99913 * 25 23 21 27 27 H 1.48492 * 109.47074 * 210.00270 * 25 23 21 28 28 H 1.48504 * 109.46906 * 330.00365 * 25 23 21 29 29 H 1.09001 * 109.47078 * 304.20426 * 1 2 3 30 30 H 1.08999 * 109.46865 * 64.20694 * 1 2 3 31 31 H 1.09000 * 109.47134 * 184.20367 * 1 2 3 32 32 H 1.09001 * 110.66234 * 37.33594 * 4 2 1 33 33 H 1.08996 * 110.66857 * 274.20807 * 4 2 1 34 34 H 1.08998 * 115.54692 * 77.86177 * 6 5 4 35 35 H 1.09005 * 117.49740 * 215.00360 * 7 6 5 36 36 H 1.09007 * 117.50440 * 0.02562 * 7 6 5 37 37 H 1.09005 * 117.49857 * 359.97107 * 8 6 5 38 38 H 1.08999 * 117.50188 * 144.97975 * 8 6 5 39 39 H 1.08992 * 109.91511 * 144.68495 * 9 5 4 40 40 H 1.08995 * 109.91641 * 265.98024 * 9 5 4 41 41 H 0.96997 * 119.99572 * 86.07390 * 12 10 9 42 42 H 0.97004 * 119.99800 * 0.02562 * 17 15 13 43 43 H 1.09002 * 109.46745 * 300.00283 * 18 17 15 44 44 H 1.08998 * 109.46854 * 59.99928 * 18 17 15 45 45 H 1.09002 * 109.47185 * 299.99507 * 19 18 17 46 46 H 1.08995 * 109.47290 * 60.00121 * 19 18 17 47 47 H 1.08994 * 109.46918 * 300.00223 * 20 19 18 48 48 H 1.09006 * 109.46471 * 59.99677 * 20 19 18 49 49 H 0.96999 * 120.00013 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0783 -0.7945 1.2119 5 7 3.4319 -1.2092 0.7622 6 6 3.9212 -2.3498 1.5481 7 6 5.3759 -2.3101 2.0202 8 6 4.2391 -2.1058 3.0247 9 6 3.2894 -1.5709 -0.6649 10 6 2.0771 -0.7927 -1.2092 11 1 2.3880 -0.1100 -1.9999 12 7 1.0606 -1.7210 -1.7107 13 6 1.0393 -2.0561 -3.0159 14 8 1.8618 -1.5887 -3.7759 15 6 0.0027 -3.0034 -3.5273 16 8 -0.8202 -3.4705 -2.7674 17 7 -0.0190 -3.3382 -4.8326 18 6 -1.0355 -4.2664 -5.3341 19 6 -0.8378 -4.4761 -6.8367 20 6 -1.8990 -5.4460 -7.3603 21 6 -1.7047 -5.6520 -8.8404 22 1 -0.9041 -5.1425 -9.3560 23 6 -2.5484 -6.4918 -9.5362 24 7 -3.5229 -7.1125 -8.9082 25 14 -2.3071 -6.7478 -11.3708 26 1 -1.3879 -7.8925 -11.5941 27 1 -3.6178 -7.0339 -12.0072 28 1 -1.7236 -5.5203 -11.9693 29 1 -0.3633 0.5777 0.8499 30 1 -0.3633 0.4472 -0.9253 31 1 -0.3633 -1.0249 0.0753 32 1 1.4560 -1.6664 1.4136 33 1 2.1445 -0.1557 2.0926 34 1 3.5065 -3.3204 1.2763 35 1 5.9185 -3.2547 2.0590 36 1 5.9699 -1.4374 1.7481 37 1 4.0855 -1.0989 3.4129 38 1 4.0333 -2.9159 3.7243 39 1 4.1887 -1.2871 -1.2114 40 1 3.1161 -2.6427 -0.7607 41 1 0.4029 -2.0943 -1.1032 42 1 0.6385 -2.9646 -5.4401 43 1 -0.9407 -5.2221 -4.8186 44 1 -2.0271 -3.8522 -5.1520 45 1 -0.9324 -3.5205 -7.3524 46 1 0.1538 -4.8904 -7.0183 47 1 -1.8041 -6.4014 -6.8445 48 1 -2.8909 -5.0319 -7.1785 49 1 -4.1167 -7.7031 -9.3977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343331104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:52 Heat of formation + Delta-G solvation = -48.330576 kcal Electronic energy + Delta-G solvation = -26824.549952 eV Core-core repulsion = 22980.059682 eV Total energy + Delta-G solvation = -3844.490270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01934 -39.80112 -38.40557 -37.01049 -35.70279 -34.02728 -33.29976 -32.23930 -31.26941 -29.08322 -27.19632 -26.42791 -24.79385 -22.97944 -22.73627 -22.29903 -20.87842 -20.84163 -20.35229 -20.15718 -18.48404 -17.13451 -16.89288 -16.40477 -16.06481 -16.03359 -15.44029 -15.23171 -14.98472 -14.86354 -14.45940 -14.39169 -13.87399 -13.78463 -13.46207 -13.24063 -13.05010 -12.52864 -12.33096 -12.31494 -11.94188 -11.91365 -11.82582 -11.79057 -11.64116 -11.42842 -11.16982 -10.92680 -10.81918 -10.78230 -10.61839 -10.50387 -9.92416 -9.82954 -9.61493 -9.40107 -9.15146 -9.01891 -8.89119 -8.39475 -6.04205 -4.07220 1.36530 2.26882 3.16283 3.28459 3.30093 3.35107 3.36556 3.39704 3.66315 3.97256 4.16180 4.39949 4.42250 4.47276 4.52064 4.58248 4.79713 4.83923 4.89186 4.99128 5.10950 5.18152 5.24592 5.28925 5.31815 5.34770 5.52247 5.54578 5.56570 5.61440 5.64606 5.66309 5.76303 5.78510 5.94796 6.05240 6.23358 6.34034 6.51593 6.60699 6.66199 6.86798 6.92950 7.35861 7.59868 7.67583 7.71325 7.93985 8.00843 8.35285 8.99247 9.57176 11.07042 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.001819 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.805113 B =15386.741203 C =15685.785275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.099 0.901 4 C 0.040 3.960 5 N -0.488 5.488 6 C -0.009 4.009 7 C -0.161 4.161 8 C -0.169 4.169 9 C 0.029 3.971 10 C 0.133 3.867 11 H 0.108 0.892 12 N -0.698 5.698 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.499 3.501 16 O -0.527 6.527 17 N -0.690 5.690 18 C 0.114 3.886 19 C -0.123 4.123 20 C 0.024 3.976 21 C -0.523 4.523 22 H 0.056 0.944 23 C 0.057 3.943 24 N -0.894 5.894 25 Si 0.894 3.106 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.412 0.588 42 H 0.411 0.589 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.829 14.455 24.587 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.088 4.088 5 N -0.212 5.212 6 C -0.118 4.118 7 C -0.199 4.199 8 C -0.207 4.207 9 C -0.100 4.100 10 C 0.028 3.972 11 H 0.126 0.874 12 N -0.354 5.354 13 C 0.291 3.709 14 O -0.392 6.392 15 C 0.279 3.721 16 O -0.404 6.404 17 N -0.342 5.342 18 C -0.008 4.008 19 C -0.161 4.161 20 C -0.013 4.013 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.722 3.278 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.251 0.749 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.054 14.729 24.598 31.930 hybrid contribution -0.481 -1.006 -1.128 1.586 sum 13.573 13.723 23.470 30.387 Atomic orbital electron populations 1.21738 0.93622 1.02202 1.02777 1.22409 0.96406 1.00136 0.93211 0.88289 1.23309 0.88843 0.98620 0.97983 1.64612 1.23288 1.31523 1.01774 1.22645 0.99846 0.93508 0.95797 1.23040 0.90861 1.03419 1.02544 1.23016 1.03305 1.03185 0.91177 1.23340 0.98651 0.99062 0.88944 1.21949 0.87213 0.90875 0.97168 0.87355 1.45976 1.33776 1.46631 1.08970 1.20394 0.85222 0.82263 0.83068 1.90764 1.39229 1.53096 1.56157 1.20008 0.85350 0.82874 0.83869 1.90760 1.39456 1.54016 1.56186 1.46080 1.33926 1.46024 1.08173 1.21853 0.90307 0.92004 0.96677 1.21931 1.02005 1.01546 0.90604 1.19034 0.92957 0.93511 0.95828 1.21199 1.14437 1.26889 0.93614 0.92557 1.25030 0.95178 0.95757 0.98498 1.69958 1.17599 1.29647 1.36069 0.86567 0.77456 0.78526 0.85297 1.20650 1.21198 1.19861 0.91721 0.91696 0.92369 0.93193 0.89600 0.89307 0.88722 0.88063 0.88308 0.88665 0.89076 0.92625 0.74926 0.75281 0.91106 0.91062 0.92396 0.92422 0.96210 0.96188 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.47 37.16 0.31 -0.55 16 2 C -0.10 -0.64 3.62 -88.76 -0.32 -0.96 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.04 0.25 5.77 -1.90 -0.01 0.24 16 5 N -0.49 -3.70 5.42 -222.50 -1.21 -4.90 16 6 C -0.01 -0.06 4.97 -67.72 -0.34 -0.40 16 7 C -0.16 -1.03 10.46 -26.70 -0.28 -1.31 16 8 C -0.17 -1.00 10.18 -26.69 -0.27 -1.27 16 9 C 0.03 0.24 6.50 -2.75 -0.02 0.22 16 10 C 0.13 1.10 3.30 -66.57 -0.22 0.88 16 11 H 0.11 1.00 7.42 -51.93 -0.39 0.61 16 12 N -0.70 -6.76 4.27 -52.92 -0.23 -6.99 16 13 C 0.51 6.43 7.89 -11.59 -0.09 6.34 16 14 O -0.52 -7.44 16.05 5.49 0.09 -7.35 16 15 C 0.50 7.29 7.89 -11.59 -0.09 7.19 16 16 O -0.53 -8.74 16.48 5.49 0.09 -8.65 16 17 N -0.69 -10.19 5.55 -60.73 -0.34 -10.52 16 18 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 19 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 20 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 21 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 22 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 25 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.37 6.35 -51.93 -0.33 0.04 16 32 H 0.05 0.33 7.88 -51.93 -0.41 -0.08 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.68 7.83 -51.93 -0.41 0.27 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.52 7.35 -51.93 -0.38 0.14 16 41 H 0.41 3.74 6.16 -40.82 -0.25 3.49 16 42 H 0.41 5.55 7.94 -40.82 -0.32 5.22 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -31.29 400.58 -10.25 -41.53 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.37 Total: 3.32 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.04 Total: -3.06 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -1.03 Total: -48.26 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.18 Total: -16.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.29 -10.25 -41.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343331104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.796 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds