Wall clock time and date at job start Fri Apr 10 2020 18:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.78619 * 2 1 4 4 C 1.54939 * 110.72533 * 123.24766 * 2 1 3 5 5 N 1.48536 * 103.22729 * 155.77256 * 4 2 1 6 6 C 1.46904 * 110.99852 * 200.28039 * 5 4 2 7 7 C 1.52992 * 117.49628 * 223.53745 * 6 5 4 8 8 C 1.52997 * 117.49731 * 292.19780 * 6 5 4 9 9 C 1.47907 * 105.82037 * 320.79389 * 5 4 2 10 10 C 1.53994 * 107.05548 * 25.33185 * 9 5 4 11 11 H 1.08995 * 110.39196 * 117.73658 * 10 9 5 12 12 N 1.46505 * 110.30682 * 239.85615 * 10 9 5 13 13 C 1.34776 * 120.00203 * 266.07628 * 12 10 9 14 14 O 1.21353 * 119.99904 * 359.97438 * 13 12 10 15 15 C 1.49449 * 120.00015 * 179.97438 * 13 12 10 16 16 O 1.21353 * 119.99984 * 0.02562 * 15 13 12 17 17 N 1.34774 * 120.00001 * 179.97438 * 15 13 12 18 18 C 1.46505 * 120.00188 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47008 * 180.02562 * 18 17 15 20 20 C 1.53009 * 109.47051 * 179.97438 * 19 18 17 21 21 C 1.50692 * 109.47009 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.37887 * 119.99777 * 179.97438 * 21 20 19 24 24 N 1.31507 * 119.99737 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46760 * 89.99913 * 25 23 21 27 27 H 1.48492 * 109.47074 * 210.00270 * 25 23 21 28 28 H 1.48504 * 109.46906 * 330.00365 * 25 23 21 29 29 H 1.09001 * 109.47078 * 304.20426 * 1 2 3 30 30 H 1.08999 * 109.46865 * 64.20694 * 1 2 3 31 31 H 1.09000 * 109.47134 * 184.20367 * 1 2 3 32 32 H 1.09001 * 110.66234 * 37.33594 * 4 2 1 33 33 H 1.08996 * 110.66857 * 274.20807 * 4 2 1 34 34 H 1.08998 * 115.54692 * 77.86177 * 6 5 4 35 35 H 1.09005 * 117.49740 * 215.00360 * 7 6 5 36 36 H 1.09007 * 117.50440 * 0.02562 * 7 6 5 37 37 H 1.09005 * 117.49857 * 359.97107 * 8 6 5 38 38 H 1.08999 * 117.50188 * 144.97975 * 8 6 5 39 39 H 1.08992 * 109.91511 * 144.68495 * 9 5 4 40 40 H 1.08995 * 109.91641 * 265.98024 * 9 5 4 41 41 H 0.96997 * 119.99572 * 86.07390 * 12 10 9 42 42 H 0.97004 * 119.99800 * 0.02562 * 17 15 13 43 43 H 1.09002 * 109.46745 * 300.00283 * 18 17 15 44 44 H 1.08998 * 109.46854 * 59.99928 * 18 17 15 45 45 H 1.09002 * 109.47185 * 299.99507 * 19 18 17 46 46 H 1.08995 * 109.47290 * 60.00121 * 19 18 17 47 47 H 1.08994 * 109.46918 * 300.00223 * 20 19 18 48 48 H 1.09006 * 109.46471 * 59.99677 * 20 19 18 49 49 H 0.96999 * 120.00013 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0783 -0.7945 1.2119 5 7 3.4319 -1.2092 0.7622 6 6 3.9212 -2.3498 1.5481 7 6 5.3759 -2.3101 2.0202 8 6 4.2391 -2.1058 3.0247 9 6 3.2894 -1.5709 -0.6649 10 6 2.0771 -0.7927 -1.2092 11 1 2.3880 -0.1100 -1.9999 12 7 1.0606 -1.7210 -1.7107 13 6 1.0393 -2.0561 -3.0159 14 8 1.8618 -1.5887 -3.7759 15 6 0.0027 -3.0034 -3.5273 16 8 -0.8202 -3.4705 -2.7674 17 7 -0.0190 -3.3382 -4.8326 18 6 -1.0355 -4.2664 -5.3341 19 6 -0.8378 -4.4761 -6.8367 20 6 -1.8990 -5.4460 -7.3603 21 6 -1.7047 -5.6520 -8.8404 22 1 -0.9041 -5.1425 -9.3560 23 6 -2.5484 -6.4918 -9.5362 24 7 -3.5229 -7.1125 -8.9082 25 14 -2.3071 -6.7478 -11.3708 26 1 -1.3879 -7.8925 -11.5941 27 1 -3.6178 -7.0339 -12.0072 28 1 -1.7236 -5.5203 -11.9693 29 1 -0.3633 0.5777 0.8499 30 1 -0.3633 0.4472 -0.9253 31 1 -0.3633 -1.0249 0.0753 32 1 1.4560 -1.6664 1.4136 33 1 2.1445 -0.1557 2.0926 34 1 3.5065 -3.3204 1.2763 35 1 5.9185 -3.2547 2.0590 36 1 5.9699 -1.4374 1.7481 37 1 4.0855 -1.0989 3.4129 38 1 4.0333 -2.9159 3.7243 39 1 4.1887 -1.2871 -1.2114 40 1 3.1161 -2.6427 -0.7607 41 1 0.4029 -2.0943 -1.1032 42 1 0.6385 -2.9646 -5.4401 43 1 -0.9407 -5.2221 -4.8186 44 1 -2.0271 -3.8522 -5.1520 45 1 -0.9324 -3.5205 -7.3524 46 1 0.1538 -4.8904 -7.0183 47 1 -1.8041 -6.4014 -6.8445 48 1 -2.8909 -5.0319 -7.1785 49 1 -4.1167 -7.7031 -9.3977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343331104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:52 Heat of formation + Delta-G solvation = -69.984774 kcal Electronic energy + Delta-G solvation = -26825.488949 eV Core-core repulsion = 22980.059682 eV Total energy + Delta-G solvation = -3845.429267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98307 -40.65881 -39.42280 -37.67049 -37.13293 -35.35887 -34.67513 -33.06349 -32.80913 -29.86576 -28.86542 -26.96666 -26.19694 -24.41489 -23.21423 -23.08241 -22.38567 -21.56220 -21.43135 -20.85198 -19.61737 -18.51135 -18.08882 -17.48556 -17.22386 -16.98088 -16.53383 -16.30193 -16.23116 -15.83569 -15.72461 -15.34295 -15.00810 -14.74146 -14.28436 -14.25475 -13.81897 -13.78760 -13.60133 -13.53002 -13.14516 -12.97599 -12.86397 -12.76680 -12.55932 -12.41215 -12.40250 -12.24844 -11.98567 -11.73408 -11.71204 -11.56737 -11.33005 -11.24581 -11.03624 -10.75443 -10.55424 -10.45632 -10.31676 -9.49440 -8.20090 -6.30939 0.25553 1.21933 1.41823 1.42548 1.53702 2.05194 2.40662 2.51606 2.79307 2.87051 3.13834 3.34570 3.41404 3.55600 3.84679 3.99756 4.06586 4.08695 4.16629 4.18419 4.25119 4.34319 4.45869 4.51060 4.55961 4.60959 4.73922 4.79229 4.84370 4.85575 4.85994 4.90207 5.02352 5.04915 5.13099 5.13789 5.18987 5.21922 5.29591 5.30005 5.50843 5.69799 5.74315 5.83695 5.84231 6.03663 6.21853 6.27782 6.64990 6.85757 6.86431 7.38384 8.91733 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.001819 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.805113 B =15386.741203 C =15685.785275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.110 0.890 4 C 0.041 3.959 5 N -0.490 5.490 6 C -0.025 4.025 7 C -0.163 4.163 8 C -0.157 4.157 9 C 0.033 3.967 10 C 0.132 3.868 11 H 0.101 0.899 12 N -0.681 5.681 13 C 0.517 3.483 14 O -0.536 6.536 15 C 0.501 3.499 16 O -0.548 6.548 17 N -0.686 5.686 18 C 0.127 3.873 19 C -0.106 4.106 20 C 0.025 3.975 21 C -0.543 4.543 22 H 0.064 0.936 23 C -0.002 4.002 24 N -0.932 5.932 25 Si 0.965 3.035 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.262 1.262 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.417 0.583 42 H 0.419 0.581 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.067 0.933 47 H -0.004 1.004 48 H -0.003 1.003 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.911 15.632 25.125 33.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.128 0.872 4 C -0.086 4.086 5 N -0.214 5.214 6 C -0.134 4.134 7 C -0.200 4.200 8 C -0.194 4.194 9 C -0.096 4.096 10 C 0.027 3.973 11 H 0.119 0.881 12 N -0.336 5.336 13 C 0.297 3.703 14 O -0.412 6.412 15 C 0.281 3.719 16 O -0.426 6.426 17 N -0.338 5.338 18 C 0.004 3.996 19 C -0.144 4.144 20 C -0.013 4.013 21 C -0.581 4.581 22 H 0.082 0.918 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.790 3.210 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.187 1.187 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.256 0.744 42 H 0.257 0.743 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.157 15.930 25.167 33.420 hybrid contribution -0.811 -1.367 -1.207 1.996 sum 14.347 14.562 23.960 31.496 Atomic orbital electron populations 1.21726 0.93237 1.02145 1.03060 1.22390 0.96591 1.00251 0.91909 0.87206 1.23356 0.88165 0.98719 0.98335 1.64634 1.23992 1.31593 1.01196 1.22693 1.00590 0.93166 0.96917 1.23081 0.90606 1.03638 1.02702 1.23065 1.02152 1.03744 0.90464 1.23242 0.98357 0.98263 0.89763 1.22074 0.86929 0.90542 0.97764 0.88051 1.45956 1.33745 1.45987 1.07919 1.19966 0.84533 0.81954 0.83853 1.90764 1.39804 1.53892 1.56784 1.20337 0.85388 0.82728 0.83426 1.90751 1.40385 1.54836 1.56635 1.45889 1.33592 1.45662 1.08630 1.21482 0.90697 0.92262 0.95132 1.21643 1.00358 1.00429 0.91972 1.18936 0.93666 0.93696 0.95011 1.21678 1.14537 1.26821 0.95033 0.91776 1.25984 0.94852 0.95498 1.03620 1.70093 1.18620 1.30460 1.38092 0.85441 0.77497 0.78874 0.79191 1.19886 1.20925 1.18659 0.90151 0.92516 0.92781 0.93357 0.88327 0.90014 0.88041 0.88473 0.87973 0.87621 0.89586 0.93795 0.74368 0.74317 0.91770 0.91647 0.91418 0.91481 0.98548 0.98483 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.47 71.98 0.61 -0.86 16 2 C -0.09 -0.99 3.62 -9.59 -0.03 -1.02 16 3 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.04 0.45 5.77 86.65 0.50 0.95 16 5 N -0.49 -6.84 5.42 -857.86 -4.65 -11.49 16 6 C -0.02 -0.33 4.97 44.91 0.22 -0.11 16 7 C -0.16 -1.89 10.46 30.62 0.32 -1.57 16 8 C -0.16 -1.58 10.18 30.62 0.31 -1.27 16 9 C 0.03 0.53 6.50 86.45 0.56 1.09 16 10 C 0.13 2.04 3.30 45.87 0.15 2.19 16 11 H 0.10 1.78 7.42 -2.39 -0.02 1.76 16 12 N -0.68 -12.67 4.27 -439.70 -1.88 -14.54 16 13 C 0.52 12.70 7.89 87.27 0.69 13.38 16 14 O -0.54 -15.00 16.05 -3.26 -0.05 -15.05 16 15 C 0.50 14.33 7.89 87.27 0.69 15.02 16 16 O -0.55 -17.96 16.48 -3.26 -0.05 -18.02 16 17 N -0.69 -19.76 5.55 -464.41 -2.58 -22.33 16 18 C 0.13 4.30 5.67 86.38 0.49 4.80 16 19 C -0.11 -4.06 5.27 30.60 0.16 -3.90 16 20 C 0.02 1.26 4.97 29.85 0.15 1.41 16 21 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 22 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 23 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 24 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 25 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.60 6.35 -2.39 -0.02 0.58 16 32 H 0.05 0.56 7.88 -2.39 -0.02 0.54 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.21 7.83 -2.39 -0.02 1.19 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 0.81 7.35 -2.39 -0.02 0.79 16 41 H 0.42 7.20 6.16 -92.71 -0.57 6.63 16 42 H 0.42 10.84 7.94 -92.71 -0.74 10.11 16 43 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 49 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -66.66 400.58 -1.74 -68.40 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.36 Total: 22.73 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.52 Total: 0.53 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -8.82 Total: -104.43 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.11 Total: -33.07 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.66 -1.74 -68.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343331104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.583 kcal (2) G-P(sol) polarization free energy of solvation -66.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds