Wall clock time and date at job start Fri Apr 10 2020 18:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.36889 * 2 1 4 4 C 1.54617 * 110.35371 * 237.70483 * 2 1 3 5 5 N 1.48558 * 104.59612 * 217.22161 * 4 2 1 6 6 C 1.46899 * 110.99892 * 159.09330 * 5 4 2 7 7 C 1.53006 * 117.49939 * 13.20573 * 6 5 4 8 8 C 1.52994 * 117.50134 * 304.54248 * 6 5 4 9 9 C 1.48556 * 104.22278 * 39.53899 * 5 4 2 10 10 C 1.54262 * 110.32545 * 122.18924 * 2 1 3 11 11 H 1.08997 * 110.31784 * 237.89402 * 10 2 1 12 12 N 1.46498 * 110.32053 * 359.97438 * 10 2 1 13 13 C 1.34775 * 119.99689 * 203.57289 * 12 10 2 14 14 O 1.21343 * 120.00459 * 0.02562 * 13 12 10 15 15 C 1.49453 * 119.99799 * 180.02562 * 13 12 10 16 16 O 1.21353 * 120.00208 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99937 * 179.72511 * 15 13 12 18 18 C 1.46504 * 119.99858 * 180.27545 * 17 15 13 19 19 C 1.53004 * 109.46932 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.46992 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46983 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00145 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00161 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99703 * 0.02562 * 23 21 20 25 25 Si 1.86789 * 120.00258 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47515 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47139 * 120.00326 * 25 23 21 28 28 H 1.48502 * 109.47343 * 240.00535 * 25 23 21 29 29 H 1.09003 * 109.46770 * 297.81458 * 1 2 3 30 30 H 1.09000 * 109.47181 * 57.81282 * 1 2 3 31 31 H 1.08998 * 109.47363 * 177.81497 * 1 2 3 32 32 H 1.09002 * 110.36256 * 98.46619 * 4 2 1 33 33 H 1.09003 * 110.55868 * 336.07527 * 4 2 1 34 34 H 1.08998 * 115.54875 * 158.87280 * 6 5 4 35 35 H 1.08991 * 117.49508 * 359.97438 * 7 6 5 36 36 H 1.08999 * 117.49476 * 145.02032 * 7 6 5 37 37 H 1.09000 * 117.50314 * 214.97824 * 8 6 5 38 38 H 1.09006 * 117.49931 * 0.02562 * 8 6 5 39 39 H 1.08995 * 110.41331 * 201.74029 * 9 5 4 40 40 H 1.08998 * 110.51415 * 79.34386 * 9 5 4 41 41 H 0.97000 * 120.00381 * 23.57565 * 12 10 2 42 42 H 0.97000 * 120.00317 * 0.28450 * 17 15 13 43 43 H 1.08992 * 109.47142 * 300.00148 * 18 17 15 44 44 H 1.08997 * 109.46860 * 60.00391 * 18 17 15 45 45 H 1.08998 * 109.47524 * 300.00356 * 19 18 17 46 46 H 1.09005 * 109.46510 * 60.00408 * 19 18 17 47 47 H 1.08998 * 109.47307 * 300.00526 * 20 19 18 48 48 H 1.08997 * 109.46799 * 60.00313 * 20 19 18 49 49 H 0.97003 * 120.00173 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0678 -0.7745 -1.2254 5 7 3.2713 -1.4844 -0.7209 6 6 3.6104 -2.6241 -1.5834 7 6 2.9247 -2.7054 -2.9488 8 6 2.5225 -3.6710 -1.8311 9 6 2.8822 -1.9423 0.6377 10 6 2.0658 -0.7706 1.2242 11 1 2.7067 -0.1264 1.8261 12 7 0.9543 -1.2784 2.0321 13 6 1.1401 -1.5495 3.3392 14 8 2.2278 -1.3725 3.8470 15 6 0.0063 -2.0681 4.1633 16 8 -1.0815 -2.2456 3.6555 17 7 0.1935 -2.3444 5.4691 18 6 -0.9164 -2.8585 6.2755 19 6 -0.4406 -3.0861 7.7117 20 6 -1.5998 -3.6224 8.5540 21 6 -1.1313 -3.8460 9.9688 22 1 -0.1092 -3.6271 10.2402 23 6 -2.0076 -4.3301 10.9169 24 7 -3.2522 -4.5972 10.5863 25 14 -1.4272 -4.6065 12.6706 26 1 0.0052 -4.2313 12.7830 27 1 -2.2319 -3.7692 13.5962 28 1 -1.5936 -6.0385 13.0272 29 1 -0.3633 0.4795 0.9090 30 1 -0.3633 0.5474 -0.8697 31 1 -0.3634 -1.0269 -0.0392 32 1 2.3407 -0.0821 -2.0218 33 1 1.3262 -1.4895 -1.5819 34 1 4.6402 -2.9748 -1.5158 35 1 2.2217 -1.9135 -3.2068 36 1 3.5033 -3.1100 -3.7792 37 1 2.8366 -4.7103 -1.9268 38 1 1.5549 -3.5138 -1.3543 39 1 3.7684 -2.1292 1.2442 40 1 2.2679 -2.8406 0.5767 41 1 0.0846 -1.4197 1.6264 42 1 1.0630 -2.2028 5.8750 43 1 -1.7321 -2.1357 6.2736 44 1 -1.2653 -3.8013 5.8542 45 1 0.3755 -3.8087 7.7140 46 1 -0.0920 -2.1430 8.1327 47 1 -2.4155 -2.8995 8.5517 48 1 -1.9488 -4.5654 8.1332 49 1 -3.8687 -4.9381 11.2531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343331105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:55 Heat of formation + Delta-G solvation = -40.739238 kcal Electronic energy + Delta-G solvation = -27008.944360 eV Core-core repulsion = 23164.783275 eV Total energy + Delta-G solvation = -3844.161085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.13212 -40.10290 -38.51955 -37.00482 -35.67670 -33.89916 -33.28046 -32.15569 -31.26263 -28.93507 -27.16975 -26.69630 -24.80950 -23.39262 -22.80239 -22.57076 -20.85665 -20.51530 -20.17984 -20.04941 -18.46861 -17.22409 -16.90220 -16.47483 -16.15241 -15.99204 -15.72637 -15.21263 -15.09368 -14.75922 -14.45656 -14.23670 -13.89967 -13.81961 -13.44799 -13.32590 -12.97127 -12.71395 -12.33390 -12.27574 -12.01123 -11.90401 -11.81900 -11.73340 -11.57302 -11.44560 -11.23060 -11.03398 -10.94083 -10.77862 -10.67907 -10.59052 -9.92246 -9.81753 -9.54855 -9.39486 -9.13327 -9.00899 -8.90877 -8.39535 -6.04094 -4.07005 1.37955 2.27103 3.14049 3.20792 3.29337 3.36986 3.40812 3.45445 3.71533 3.99192 4.03292 4.33405 4.34731 4.42587 4.45357 4.48912 4.54997 4.81173 4.82845 4.93292 5.08696 5.10243 5.16338 5.26442 5.32034 5.39356 5.50142 5.53745 5.57036 5.57198 5.57711 5.62888 5.67050 5.73113 5.93035 6.05965 6.24233 6.29622 6.48633 6.52236 6.67075 6.88212 6.93538 7.36965 7.60483 7.69029 7.71733 7.94333 8.01887 8.35586 8.99744 9.57481 11.07203 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.001835 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.405806 B =15252.379882 C =15442.959216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 H 0.095 0.905 4 C 0.028 3.972 5 N -0.475 5.475 6 C 0.011 3.989 7 C -0.181 4.181 8 C -0.215 4.215 9 C 0.022 3.978 10 C 0.141 3.859 11 H 0.106 0.894 12 N -0.701 5.701 13 C 0.508 3.492 14 O -0.517 6.517 15 C 0.499 3.501 16 O -0.527 6.527 17 N -0.690 5.690 18 C 0.113 3.887 19 C -0.123 4.123 20 C 0.024 3.976 21 C -0.522 4.522 22 H 0.057 0.943 23 C 0.056 3.944 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.414 0.586 42 H 0.411 0.589 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.506 7.868 -28.592 31.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.122 4.122 3 H 0.113 0.887 4 C -0.100 4.100 5 N -0.197 5.197 6 C -0.098 4.098 7 C -0.219 4.219 8 C -0.254 4.254 9 C -0.107 4.107 10 C 0.036 3.964 11 H 0.124 0.876 12 N -0.358 5.358 13 C 0.289 3.711 14 O -0.391 6.391 15 C 0.279 3.721 16 O -0.405 6.405 17 N -0.342 5.342 18 C -0.008 4.008 19 C -0.161 4.161 20 C -0.014 4.014 21 C -0.560 4.560 22 H 0.075 0.925 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.818 8.148 -28.473 31.886 hybrid contribution -0.491 -0.861 0.914 1.349 sum 11.326 7.286 -27.558 30.673 Atomic orbital electron populations 1.21860 0.94020 1.02177 1.03193 1.22228 0.96339 1.00390 0.93251 0.88671 1.23416 0.91734 0.97430 0.97426 1.65439 1.32534 1.20262 1.01498 1.23007 0.97822 0.93019 0.95959 1.23315 1.03742 1.02489 0.92304 1.23437 1.00874 0.97159 1.03967 1.23583 1.00031 0.96820 0.90220 1.21787 0.87703 0.95011 0.91886 0.87592 1.46113 1.15334 1.65405 1.08913 1.20407 0.88816 0.78676 0.83175 1.90764 1.25890 1.50622 1.71856 1.20015 0.88270 0.80110 0.83698 1.90757 1.25748 1.52204 1.71749 1.46077 1.16373 1.63074 1.08672 1.21852 0.88032 0.99216 0.91749 1.21931 1.01553 1.01184 0.91416 1.19038 0.92191 0.96400 0.93745 1.21240 0.96957 1.43459 0.94383 0.92497 1.25032 0.94918 0.95526 0.99031 1.69973 1.04167 1.44923 1.34229 0.86514 0.78858 0.77808 0.84685 1.19719 1.20996 1.21000 0.91261 0.91419 0.92274 0.89456 0.92698 0.85414 0.88127 0.88162 0.88224 0.88787 0.88936 0.92523 0.74577 0.75273 0.91072 0.91092 0.92411 0.92400 0.96187 0.96195 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 7.78 37.16 0.29 -0.58 16 2 C -0.10 -0.64 3.67 -89.11 -0.33 -0.96 16 3 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.03 0.17 4.56 -2.06 -0.01 0.16 16 5 N -0.48 -3.60 5.65 -221.88 -1.25 -4.86 16 6 C 0.01 0.08 6.36 -67.71 -0.43 -0.35 16 7 C -0.18 -1.00 9.59 -26.69 -0.26 -1.26 16 8 C -0.22 -1.37 9.00 -26.69 -0.24 -1.61 16 9 C 0.02 0.19 6.14 -2.18 -0.01 0.17 16 10 C 0.14 1.19 3.36 -66.55 -0.22 0.97 16 11 H 0.11 1.02 7.60 -51.93 -0.39 0.62 16 12 N -0.70 -6.85 4.55 -52.90 -0.24 -7.09 16 13 C 0.51 6.47 7.89 -11.58 -0.09 6.38 16 14 O -0.52 -7.48 16.15 5.50 0.09 -7.39 16 15 C 0.50 7.31 7.89 -11.58 -0.09 7.21 16 16 O -0.53 -8.74 16.48 5.49 0.09 -8.65 16 17 N -0.69 -10.20 5.55 -60.73 -0.34 -10.54 16 18 C 0.11 1.93 5.67 -4.04 -0.02 1.90 16 19 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 20 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 21 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 22 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 25 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 26 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 29 H 0.07 0.44 7.74 -51.93 -0.40 0.04 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.34 6.95 -51.93 -0.36 -0.02 16 32 H 0.09 0.47 8.02 -51.93 -0.42 0.06 16 33 H 0.05 0.33 5.36 -51.93 -0.28 0.05 16 34 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.52 6.14 -51.93 -0.32 0.20 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.66 6.86 -51.93 -0.36 0.30 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.51 6.72 -51.93 -0.35 0.16 16 41 H 0.41 3.74 5.32 -40.82 -0.22 3.52 16 42 H 0.41 5.56 7.94 -40.82 -0.32 5.23 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -31.43 391.63 -10.17 -41.61 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.03 Total: 3.76 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.11 Total: -3.32 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -1.09 Total: -48.34 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.43 -10.17 -41.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343331105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.868 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds