Wall clock time and date at job start Fri Apr 10 2020 18:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.36889 * 2 1 4 4 C 1.54617 * 110.35371 * 237.70483 * 2 1 3 5 5 N 1.48558 * 104.59612 * 217.22161 * 4 2 1 6 6 C 1.46899 * 110.99892 * 159.09330 * 5 4 2 7 7 C 1.53006 * 117.49939 * 13.20573 * 6 5 4 8 8 C 1.52994 * 117.50134 * 304.54248 * 6 5 4 9 9 C 1.48556 * 104.22278 * 39.53899 * 5 4 2 10 10 C 1.54262 * 110.32545 * 122.18924 * 2 1 3 11 11 H 1.08997 * 110.31784 * 237.89402 * 10 2 1 12 12 N 1.46498 * 110.32053 * 359.97438 * 10 2 1 13 13 C 1.34775 * 119.99689 * 203.57289 * 12 10 2 14 14 O 1.21343 * 120.00459 * 0.02562 * 13 12 10 15 15 C 1.49453 * 119.99799 * 180.02562 * 13 12 10 16 16 O 1.21353 * 120.00208 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99937 * 179.72511 * 15 13 12 18 18 C 1.46504 * 119.99858 * 180.27545 * 17 15 13 19 19 C 1.53004 * 109.46932 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.46992 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46983 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00145 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00161 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99703 * 0.02562 * 23 21 20 25 25 Si 1.86789 * 120.00258 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47515 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47139 * 120.00326 * 25 23 21 28 28 H 1.48502 * 109.47343 * 240.00535 * 25 23 21 29 29 H 1.09003 * 109.46770 * 297.81458 * 1 2 3 30 30 H 1.09000 * 109.47181 * 57.81282 * 1 2 3 31 31 H 1.08998 * 109.47363 * 177.81497 * 1 2 3 32 32 H 1.09002 * 110.36256 * 98.46619 * 4 2 1 33 33 H 1.09003 * 110.55868 * 336.07527 * 4 2 1 34 34 H 1.08998 * 115.54875 * 158.87280 * 6 5 4 35 35 H 1.08991 * 117.49508 * 359.97438 * 7 6 5 36 36 H 1.08999 * 117.49476 * 145.02032 * 7 6 5 37 37 H 1.09000 * 117.50314 * 214.97824 * 8 6 5 38 38 H 1.09006 * 117.49931 * 0.02562 * 8 6 5 39 39 H 1.08995 * 110.41331 * 201.74029 * 9 5 4 40 40 H 1.08998 * 110.51415 * 79.34386 * 9 5 4 41 41 H 0.97000 * 120.00381 * 23.57565 * 12 10 2 42 42 H 0.97000 * 120.00317 * 0.28450 * 17 15 13 43 43 H 1.08992 * 109.47142 * 300.00148 * 18 17 15 44 44 H 1.08997 * 109.46860 * 60.00391 * 18 17 15 45 45 H 1.08998 * 109.47524 * 300.00356 * 19 18 17 46 46 H 1.09005 * 109.46510 * 60.00408 * 19 18 17 47 47 H 1.08998 * 109.47307 * 300.00526 * 20 19 18 48 48 H 1.08997 * 109.46799 * 60.00313 * 20 19 18 49 49 H 0.97003 * 120.00173 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0678 -0.7745 -1.2254 5 7 3.2713 -1.4844 -0.7209 6 6 3.6104 -2.6241 -1.5834 7 6 2.9247 -2.7054 -2.9488 8 6 2.5225 -3.6710 -1.8311 9 6 2.8822 -1.9423 0.6377 10 6 2.0658 -0.7706 1.2242 11 1 2.7067 -0.1264 1.8261 12 7 0.9543 -1.2784 2.0321 13 6 1.1401 -1.5495 3.3392 14 8 2.2278 -1.3725 3.8470 15 6 0.0063 -2.0681 4.1633 16 8 -1.0815 -2.2456 3.6555 17 7 0.1935 -2.3444 5.4691 18 6 -0.9164 -2.8585 6.2755 19 6 -0.4406 -3.0861 7.7117 20 6 -1.5998 -3.6224 8.5540 21 6 -1.1313 -3.8460 9.9688 22 1 -0.1092 -3.6271 10.2402 23 6 -2.0076 -4.3301 10.9169 24 7 -3.2522 -4.5972 10.5863 25 14 -1.4272 -4.6065 12.6706 26 1 0.0052 -4.2313 12.7830 27 1 -2.2319 -3.7692 13.5962 28 1 -1.5936 -6.0385 13.0272 29 1 -0.3633 0.4795 0.9090 30 1 -0.3633 0.5474 -0.8697 31 1 -0.3634 -1.0269 -0.0392 32 1 2.3407 -0.0821 -2.0218 33 1 1.3262 -1.4895 -1.5819 34 1 4.6402 -2.9748 -1.5158 35 1 2.2217 -1.9135 -3.2068 36 1 3.5033 -3.1100 -3.7792 37 1 2.8366 -4.7103 -1.9268 38 1 1.5549 -3.5138 -1.3543 39 1 3.7684 -2.1292 1.2442 40 1 2.2679 -2.8406 0.5767 41 1 0.0846 -1.4197 1.6264 42 1 1.0630 -2.2028 5.8750 43 1 -1.7321 -2.1357 6.2736 44 1 -1.2653 -3.8013 5.8542 45 1 0.3755 -3.8087 7.7140 46 1 -0.0920 -2.1430 8.1327 47 1 -2.4155 -2.8995 8.5517 48 1 -1.9488 -4.5654 8.1332 49 1 -3.8687 -4.9381 11.2531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343331105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:54 Heat of formation + Delta-G solvation = -63.034534 kcal Electronic energy + Delta-G solvation = -27009.911157 eV Core-core repulsion = 23164.783275 eV Total energy + Delta-G solvation = -3845.127882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.02762 -40.94894 -39.57458 -37.71641 -37.10775 -35.32579 -34.53984 -33.05638 -32.70993 -29.74023 -28.82497 -27.19649 -26.19841 -24.51738 -23.65857 -23.26015 -22.38019 -21.59906 -20.88984 -20.74851 -19.59281 -18.51084 -18.04857 -17.63450 -17.22107 -16.97344 -16.57313 -16.43989 -16.20484 -16.09058 -15.73406 -15.16957 -14.96125 -14.76541 -14.29076 -14.18426 -13.97838 -13.77962 -13.53785 -13.51560 -13.27533 -12.90020 -12.84130 -12.78983 -12.55828 -12.46795 -12.37846 -12.12583 -11.99604 -11.72364 -11.71156 -11.59670 -11.56224 -11.22639 -11.18589 -10.74335 -10.55884 -10.40900 -10.30142 -9.47432 -8.20108 -6.30823 0.26403 1.22370 1.41354 1.42042 1.54954 2.05940 2.40441 2.48255 2.74682 3.02550 3.13911 3.34304 3.43446 3.48136 3.81382 3.84636 3.98679 4.05157 4.07285 4.16650 4.17419 4.24076 4.43062 4.51764 4.59446 4.62200 4.65697 4.71614 4.81002 4.85270 4.90830 4.92694 5.01260 5.03998 5.07608 5.13953 5.14318 5.20212 5.21905 5.27200 5.51381 5.69284 5.70258 5.84095 5.85396 5.94499 6.22199 6.28644 6.65926 6.86226 6.87184 7.38566 8.91946 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.001835 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.405806 B =15252.379882 C =15442.959216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 H 0.105 0.895 4 C 0.030 3.970 5 N -0.482 5.482 6 C -0.003 4.003 7 C -0.168 4.168 8 C -0.219 4.219 9 C 0.027 3.973 10 C 0.139 3.861 11 H 0.096 0.904 12 N -0.684 5.684 13 C 0.515 3.485 14 O -0.535 6.535 15 C 0.501 3.499 16 O -0.547 6.547 17 N -0.686 5.686 18 C 0.127 3.873 19 C -0.106 4.106 20 C 0.024 3.976 21 C -0.541 4.541 22 H 0.064 0.936 23 C -0.002 4.002 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.419 0.581 42 H 0.419 0.581 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.067 0.933 47 H -0.003 1.003 48 H -0.004 1.004 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.652 8.551 -29.621 33.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 H 0.123 0.877 4 C -0.098 4.098 5 N -0.204 5.204 6 C -0.112 4.112 7 C -0.205 4.205 8 C -0.258 4.258 9 C -0.102 4.102 10 C 0.034 3.966 11 H 0.114 0.886 12 N -0.340 5.340 13 C 0.295 3.705 14 O -0.412 6.412 15 C 0.281 3.719 16 O -0.426 6.426 17 N -0.338 5.338 18 C 0.004 3.996 19 C -0.144 4.144 20 C -0.013 4.013 21 C -0.579 4.579 22 H 0.082 0.918 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.790 3.210 26 H -0.185 1.185 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.261 0.739 42 H 0.257 0.743 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.983 8.845 -29.540 33.457 hybrid contribution -0.857 -1.072 1.151 1.791 sum 12.126 7.773 -28.389 31.834 Atomic orbital electron populations 1.21852 0.93404 1.02271 1.03601 1.22224 0.96758 1.00489 0.91948 0.87707 1.23464 0.91274 0.97506 0.97510 1.65430 1.33232 1.20657 1.01104 1.23082 0.98033 0.93159 0.96929 1.23391 1.03230 1.01998 0.91910 1.23423 1.00318 0.97424 1.04641 1.23449 0.99264 0.96539 0.90963 1.21901 0.87196 0.95125 0.92365 0.88601 1.46100 1.16039 1.63946 1.07917 1.20008 0.87785 0.78871 0.83846 1.90764 1.26204 1.51877 1.72358 1.20329 0.88531 0.79459 0.83536 1.90748 1.26712 1.53006 1.72104 1.45888 1.16098 1.63005 1.08779 1.21484 0.88423 0.98935 0.90741 1.21645 0.99424 1.01490 0.91855 1.18940 0.93541 0.94899 0.93960 1.21710 0.97361 1.43144 0.95723 0.91784 1.25983 0.94999 0.95261 1.03751 1.70103 1.05473 1.45899 1.35832 0.85390 0.78844 0.77747 0.79001 1.18472 1.20529 1.20545 0.92037 0.89747 0.92422 0.88210 0.92330 0.85406 0.87481 0.87015 0.87953 0.89491 0.90291 0.93131 0.73939 0.74325 0.91643 0.91713 0.91480 0.91437 0.98471 0.98510 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.78 71.98 0.56 -0.88 16 2 C -0.09 -1.01 3.67 -9.82 -0.04 -1.05 16 3 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.03 0.31 4.56 86.53 0.39 0.70 16 5 N -0.48 -6.75 5.65 -855.88 -4.84 -11.58 16 6 C 0.00 -0.03 6.36 44.92 0.29 0.25 16 7 C -0.17 -1.53 9.59 30.62 0.29 -1.24 16 8 C -0.22 -2.54 9.00 30.62 0.28 -2.26 16 9 C 0.03 0.44 6.14 86.45 0.53 0.97 16 10 C 0.14 2.23 3.36 45.89 0.15 2.38 16 11 H 0.10 1.79 7.60 -2.39 -0.02 1.77 16 12 N -0.68 -12.86 4.55 -439.64 -2.00 -14.86 16 13 C 0.51 12.80 7.89 87.27 0.69 13.49 16 14 O -0.54 -15.22 16.15 -3.22 -0.05 -15.27 16 15 C 0.50 14.39 7.89 87.27 0.69 15.08 16 16 O -0.55 -17.91 16.48 -3.26 -0.05 -17.97 16 17 N -0.69 -19.81 5.55 -464.40 -2.58 -22.38 16 18 C 0.13 4.30 5.67 86.38 0.49 4.79 16 19 C -0.11 -4.06 5.27 30.60 0.16 -3.90 16 20 C 0.02 1.24 4.97 29.85 0.15 1.39 16 21 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 22 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 23 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 24 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 25 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 29 H 0.06 0.70 7.74 -2.39 -0.02 0.68 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.57 6.95 -2.39 -0.02 0.55 16 32 H 0.10 0.82 8.02 -2.39 -0.02 0.80 16 33 H 0.06 0.57 5.36 -2.39 -0.01 0.56 16 34 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.11 0.84 6.14 -2.39 -0.01 0.83 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.13 6.86 -2.38 -0.02 1.12 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 0.89 6.72 -2.39 -0.02 0.88 16 41 H 0.42 7.18 5.32 -92.71 -0.49 6.69 16 42 H 0.42 10.90 7.94 -92.71 -0.74 10.16 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 47 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -67.07 391.63 -2.14 -69.22 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.27 Total: 22.88 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.33 Total: 0.16 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -9.13 Total: -104.92 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.11 Total: -33.24 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.07 -2.14 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343331105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.182 kcal (2) G-P(sol) polarization free energy of solvation -67.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds