Wall clock time and date at job start Fri Apr 10 2020 18:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.88022 * 2 1 4 4 C 1.54318 * 109.89351 * 238.80181 * 2 1 3 5 5 C 1.55138 * 103.02157 * 218.31070 * 4 2 1 6 6 H 1.08995 * 111.02162 * 277.54490 * 5 4 2 7 7 N 1.46497 * 110.98833 * 153.74023 * 5 4 2 8 8 C 1.34787 * 119.99806 * 161.27984 * 7 5 4 9 9 O 1.21355 * 119.99399 * 359.97438 * 8 7 5 10 10 C 1.49443 * 119.99850 * 180.02562 * 8 7 5 11 11 O 1.21345 * 120.00261 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00005 * 179.97438 * 10 8 7 13 13 C 1.46493 * 120.00452 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47516 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47187 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47032 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99834 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00225 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99993 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47080 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47106 * 119.99729 * 20 18 16 23 23 H 1.48496 * 109.46763 * 239.99814 * 20 18 16 24 24 C 1.54910 * 101.65009 * 35.64973 * 5 4 2 25 25 N 1.47446 * 109.88882 * 121.02920 * 2 1 3 26 26 C 1.46894 * 110.99842 * 356.15053 * 25 2 1 27 27 C 1.53005 * 117.50113 * 251.48973 * 26 25 2 28 28 C 1.53002 * 60.00022 * 252.51093 * 27 26 25 29 29 H 1.09001 * 109.47179 * 293.40424 * 1 2 3 30 30 H 1.08997 * 109.47142 * 173.40179 * 1 2 3 31 31 H 1.09000 * 109.46879 * 53.40252 * 1 2 3 32 32 H 1.08999 * 110.69813 * 336.69265 * 4 2 1 33 33 H 1.08994 * 110.70373 * 99.92561 * 4 2 1 34 34 H 0.97001 * 120.00539 * 341.27877 * 7 5 4 35 35 H 0.97009 * 119.99846 * 0.02562 * 12 10 8 36 36 H 1.08999 * 109.46636 * 300.00227 * 13 12 10 37 37 H 1.09001 * 109.46814 * 59.99758 * 13 12 10 38 38 H 1.09006 * 109.46452 * 300.00103 * 14 13 12 39 39 H 1.08998 * 109.46843 * 59.99226 * 14 13 12 40 40 H 1.08997 * 109.46870 * 299.99387 * 15 14 13 41 41 H 1.08995 * 109.47204 * 60.00041 * 15 14 13 42 42 H 0.96996 * 120.00183 * 180.02562 * 19 18 16 43 43 H 1.09006 * 110.37010 * 204.09463 * 24 5 4 44 44 H 1.09006 * 110.37365 * 81.76417 * 24 5 4 45 45 H 1.09002 * 115.55494 * 37.19947 * 26 25 2 46 46 H 1.08996 * 117.49628 * 0.02562 * 27 26 25 47 47 H 1.09003 * 117.49742 * 145.02006 * 27 26 25 48 48 H 1.08995 * 117.49771 * 252.50456 * 28 27 26 49 49 H 1.09002 * 117.49485 * 107.48970 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0551 -0.7517 -1.2412 5 6 3.2892 -1.5144 -0.6918 6 1 4.1661 -0.8678 -0.6601 7 7 3.5566 -2.7184 -1.4823 8 6 4.7675 -3.3077 -1.4241 9 8 5.6362 -2.8404 -0.7172 10 6 5.0404 -4.5356 -2.2310 11 8 4.1719 -5.0025 -2.9382 12 7 6.2514 -5.1245 -2.1732 13 6 6.5192 -6.3279 -2.9645 14 6 7.9565 -6.7909 -2.7182 15 6 8.2364 -8.0473 -3.5451 16 6 9.6523 -8.5030 -3.3030 17 1 10.2890 -7.9513 -2.6271 18 6 10.1353 -9.6236 -3.9450 19 7 9.3602 -10.2950 -4.7683 20 14 11.8902 -10.1888 -3.6442 21 1 12.5485 -9.2689 -2.6821 22 1 11.8782 -11.5645 -3.0854 23 1 12.6390 -10.1818 -4.9266 24 6 2.8189 -1.8821 0.7376 25 7 2.0316 -0.7147 1.1881 26 6 0.9239 -1.1309 2.0586 27 6 0.7542 -0.3925 3.3879 28 6 1.2818 -1.8286 3.3725 29 1 -0.3633 0.4082 0.9431 30 1 -0.3633 -1.0208 -0.1181 31 1 -0.3633 0.6127 -0.8251 32 1 1.3056 -1.4495 -1.6147 33 1 2.3514 -0.0493 -2.0203 34 1 2.8623 -3.0917 -2.0477 35 1 6.9456 -4.7515 -1.6075 36 1 5.8280 -7.1176 -2.6701 37 1 6.3855 -6.1040 -4.0228 38 1 8.6480 -6.0012 -3.0123 39 1 8.0898 -7.0148 -1.6598 40 1 7.5450 -8.8371 -3.2513 41 1 8.1033 -7.8229 -4.6034 42 1 9.6998 -11.0836 -5.2196 43 1 3.6772 -2.0363 1.3916 44 1 2.1939 -2.7749 0.7135 45 1 0.0197 -1.4580 1.5452 46 1 1.4641 0.4024 3.6162 47 1 -0.2619 -0.2334 3.7490 48 1 0.6128 -2.6143 3.7236 49 1 2.3391 -1.9786 3.5909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343337385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:01 Heat of formation + Delta-G solvation = -45.093480 kcal Electronic energy + Delta-G solvation = -26634.984970 eV Core-core repulsion = 22790.635071 eV Total energy + Delta-G solvation = -3844.349899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93515 -40.03409 -38.47986 -36.69295 -35.71723 -34.45740 -33.32011 -31.40517 -31.26239 -30.00945 -27.28144 -26.01836 -24.79726 -23.14396 -22.81811 -22.35276 -21.26699 -20.79248 -20.23841 -19.46035 -18.44432 -17.29999 -17.16001 -16.41870 -16.21682 -15.92838 -15.30509 -15.23746 -14.91448 -14.75962 -14.45505 -14.29671 -14.00160 -13.85388 -13.54995 -13.34898 -12.83785 -12.74776 -12.33082 -12.03591 -11.94101 -11.89667 -11.82419 -11.81534 -11.71209 -11.59805 -11.22531 -10.93921 -10.80297 -10.77727 -10.58945 -10.48685 -9.92073 -9.82326 -9.57533 -9.39592 -9.13136 -9.00863 -8.72883 -8.39374 -6.03876 -4.06810 1.36969 2.23163 3.16774 3.26061 3.29526 3.37185 3.40912 3.41562 3.67103 4.05115 4.12418 4.36221 4.42830 4.48279 4.53745 4.58629 4.72900 4.76350 4.81909 4.91563 5.00081 5.18482 5.28393 5.29089 5.32261 5.34821 5.50075 5.55631 5.57336 5.59062 5.61722 5.67206 5.76201 5.80651 5.96555 6.06138 6.24239 6.46330 6.52401 6.64667 6.67560 6.87203 6.93727 7.36313 7.60677 7.67775 7.71959 7.94504 8.01539 8.35802 8.99932 9.57701 11.07412 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.001738 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.734041 B =16102.942567 C =16537.892257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.074 3.926 3 H 0.093 0.907 4 C -0.146 4.146 5 C 0.135 3.865 6 H 0.108 0.892 7 N -0.697 5.697 8 C 0.511 3.489 9 O -0.515 6.515 10 C 0.500 3.500 11 O -0.527 6.527 12 N -0.690 5.690 13 C 0.113 3.887 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.035 3.965 25 N -0.495 5.495 26 C -0.008 4.008 27 C -0.162 4.162 28 C -0.175 4.175 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.411 0.589 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.755 22.667 11.981 32.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.034 4.034 3 H 0.111 0.889 4 C -0.185 4.185 5 C 0.030 3.970 6 H 0.126 0.874 7 N -0.351 5.351 8 C 0.291 3.709 9 O -0.390 6.390 10 C 0.280 3.720 11 O -0.404 6.404 12 N -0.342 5.342 13 C -0.008 4.008 14 C -0.161 4.161 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.093 4.093 25 N -0.219 5.219 26 C -0.117 4.117 27 C -0.200 4.200 28 C -0.213 4.213 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.250 0.750 35 H 0.247 0.753 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.409 22.828 12.152 32.944 hybrid contribution 0.419 -0.996 -0.383 1.147 sum -19.990 21.832 11.769 31.855 Atomic orbital electron populations 1.22324 0.95387 1.01907 1.02799 1.22358 0.94365 0.98929 0.87750 0.88934 1.23184 0.96818 0.99888 0.98588 1.22155 0.98978 0.85869 0.90043 0.87396 1.45667 1.14280 1.28319 1.46807 1.20390 0.82876 0.85034 0.82557 1.90775 1.44729 1.63937 1.39541 1.19981 0.83903 0.84876 0.83270 1.90760 1.44870 1.64501 1.40245 1.46077 1.13140 1.28880 1.46109 1.21854 0.99331 0.84513 0.95151 1.21930 0.91669 1.00848 1.01632 1.19038 0.96934 0.90540 0.94875 1.21241 0.97652 1.10841 1.26324 0.92497 1.25029 0.97726 0.96594 0.95128 1.69968 1.35942 1.18485 1.28889 0.86517 0.84767 0.78574 0.78028 1.19719 1.20996 1.20998 1.23383 0.98047 0.92471 0.95432 1.63530 1.20229 1.22244 1.15932 1.22727 0.95538 1.04912 0.88546 1.23037 1.02131 0.95622 0.99172 1.23063 1.02535 0.95787 0.99875 0.91234 0.92476 0.91881 0.90317 0.89523 0.75003 0.75271 0.91084 0.91065 0.92404 0.92405 0.96187 0.96180 0.92973 0.89331 0.92729 0.88195 0.88173 0.88883 0.88713 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 7.69 37.16 0.29 -0.51 16 2 C 0.07 0.45 4.02 -66.73 -0.27 0.18 16 3 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -0.85 6.09 -24.91 -0.15 -1.01 16 5 C 0.13 1.12 3.31 -65.79 -0.22 0.90 16 6 H 0.11 1.03 7.73 -51.93 -0.40 0.63 16 7 N -0.70 -6.71 5.22 -52.17 -0.27 -6.99 16 8 C 0.51 6.47 7.89 -11.58 -0.09 6.38 16 9 O -0.52 -7.48 16.22 5.49 0.09 -7.39 16 10 C 0.50 7.30 7.89 -11.59 -0.09 7.21 16 11 O -0.53 -8.74 16.48 5.50 0.09 -8.65 16 12 N -0.69 -10.20 5.55 -60.74 -0.34 -10.54 16 13 C 0.11 1.93 5.67 -4.04 -0.02 1.90 16 14 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 15 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 20 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.04 0.30 6.04 -2.30 -0.01 0.29 16 25 N -0.50 -3.76 5.32 -215.44 -1.15 -4.91 16 26 C -0.01 -0.06 3.52 -67.71 -0.24 -0.30 16 27 C -0.16 -0.99 10.41 -26.73 -0.28 -1.27 16 28 C -0.18 -1.18 10.00 -26.73 -0.27 -1.44 16 29 H 0.07 0.35 6.93 -51.93 -0.36 -0.01 16 30 H 0.06 0.28 6.91 -51.93 -0.36 -0.08 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.42 7.61 -51.93 -0.40 0.02 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.41 3.55 7.99 -40.82 -0.33 3.22 16 35 H 0.41 5.55 7.95 -40.82 -0.32 5.23 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.48 7.81 -51.93 -0.41 0.08 16 45 H 0.10 0.62 5.62 -51.93 -0.29 0.33 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 398.86 15.07 6.01 6.01 Total: -1.00 -31.56 398.86 -10.22 -41.78 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.32 Total: 3.14 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.05 Total: -3.03 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -1.02 Total: -48.30 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.56 -10.22 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343337385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.312 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds