Wall clock time and date at job start Fri Apr 10 2020 18:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.88022 * 2 1 4 4 C 1.54318 * 109.89351 * 238.80181 * 2 1 3 5 5 C 1.55138 * 103.02157 * 218.31070 * 4 2 1 6 6 H 1.08995 * 111.02162 * 277.54490 * 5 4 2 7 7 N 1.46497 * 110.98833 * 153.74023 * 5 4 2 8 8 C 1.34787 * 119.99806 * 161.27984 * 7 5 4 9 9 O 1.21355 * 119.99399 * 359.97438 * 8 7 5 10 10 C 1.49443 * 119.99850 * 180.02562 * 8 7 5 11 11 O 1.21345 * 120.00261 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00005 * 179.97438 * 10 8 7 13 13 C 1.46493 * 120.00452 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47516 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47187 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47032 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99834 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00225 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99993 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47080 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47106 * 119.99729 * 20 18 16 23 23 H 1.48496 * 109.46763 * 239.99814 * 20 18 16 24 24 C 1.54910 * 101.65009 * 35.64973 * 5 4 2 25 25 N 1.47446 * 109.88882 * 121.02920 * 2 1 3 26 26 C 1.46894 * 110.99842 * 356.15053 * 25 2 1 27 27 C 1.53005 * 117.50113 * 251.48973 * 26 25 2 28 28 C 1.53002 * 60.00022 * 252.51093 * 27 26 25 29 29 H 1.09001 * 109.47179 * 293.40424 * 1 2 3 30 30 H 1.08997 * 109.47142 * 173.40179 * 1 2 3 31 31 H 1.09000 * 109.46879 * 53.40252 * 1 2 3 32 32 H 1.08999 * 110.69813 * 336.69265 * 4 2 1 33 33 H 1.08994 * 110.70373 * 99.92561 * 4 2 1 34 34 H 0.97001 * 120.00539 * 341.27877 * 7 5 4 35 35 H 0.97009 * 119.99846 * 0.02562 * 12 10 8 36 36 H 1.08999 * 109.46636 * 300.00227 * 13 12 10 37 37 H 1.09001 * 109.46814 * 59.99758 * 13 12 10 38 38 H 1.09006 * 109.46452 * 300.00103 * 14 13 12 39 39 H 1.08998 * 109.46843 * 59.99226 * 14 13 12 40 40 H 1.08997 * 109.46870 * 299.99387 * 15 14 13 41 41 H 1.08995 * 109.47204 * 60.00041 * 15 14 13 42 42 H 0.96996 * 120.00183 * 180.02562 * 19 18 16 43 43 H 1.09006 * 110.37010 * 204.09463 * 24 5 4 44 44 H 1.09006 * 110.37365 * 81.76417 * 24 5 4 45 45 H 1.09002 * 115.55494 * 37.19947 * 26 25 2 46 46 H 1.08996 * 117.49628 * 0.02562 * 27 26 25 47 47 H 1.09003 * 117.49742 * 145.02006 * 27 26 25 48 48 H 1.08995 * 117.49771 * 252.50456 * 28 27 26 49 49 H 1.09002 * 117.49485 * 107.48970 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0551 -0.7517 -1.2412 5 6 3.2892 -1.5144 -0.6918 6 1 4.1661 -0.8678 -0.6601 7 7 3.5566 -2.7184 -1.4823 8 6 4.7675 -3.3077 -1.4241 9 8 5.6362 -2.8404 -0.7172 10 6 5.0404 -4.5356 -2.2310 11 8 4.1719 -5.0025 -2.9382 12 7 6.2514 -5.1245 -2.1732 13 6 6.5192 -6.3279 -2.9645 14 6 7.9565 -6.7909 -2.7182 15 6 8.2364 -8.0473 -3.5451 16 6 9.6523 -8.5030 -3.3030 17 1 10.2890 -7.9513 -2.6271 18 6 10.1353 -9.6236 -3.9450 19 7 9.3602 -10.2950 -4.7683 20 14 11.8902 -10.1888 -3.6442 21 1 12.5485 -9.2689 -2.6821 22 1 11.8782 -11.5645 -3.0854 23 1 12.6390 -10.1818 -4.9266 24 6 2.8189 -1.8821 0.7376 25 7 2.0316 -0.7147 1.1881 26 6 0.9239 -1.1309 2.0586 27 6 0.7542 -0.3925 3.3879 28 6 1.2818 -1.8286 3.3725 29 1 -0.3633 0.4082 0.9431 30 1 -0.3633 -1.0208 -0.1181 31 1 -0.3633 0.6127 -0.8251 32 1 1.3056 -1.4495 -1.6147 33 1 2.3514 -0.0493 -2.0203 34 1 2.8623 -3.0917 -2.0477 35 1 6.9456 -4.7515 -1.6075 36 1 5.8280 -7.1176 -2.6701 37 1 6.3855 -6.1040 -4.0228 38 1 8.6480 -6.0012 -3.0123 39 1 8.0898 -7.0148 -1.6598 40 1 7.5450 -8.8371 -3.2513 41 1 8.1033 -7.8229 -4.6034 42 1 9.6998 -11.0836 -5.2196 43 1 3.6772 -2.0363 1.3916 44 1 2.1939 -2.7749 0.7135 45 1 0.0197 -1.4580 1.5452 46 1 1.4641 0.4024 3.6162 47 1 -0.2619 -0.2334 3.7490 48 1 0.6128 -2.6143 3.7236 49 1 2.3391 -1.9786 3.5909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343337385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:59 Heat of formation + Delta-G solvation = -67.743462 kcal Electronic energy + Delta-G solvation = -26635.967147 eV Core-core repulsion = 22790.635071 eV Total energy + Delta-G solvation = -3845.332076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.89796 -40.80621 -39.55328 -37.41871 -37.06800 -35.48522 -34.99237 -33.05110 -31.96096 -30.67057 -28.96432 -26.74151 -26.03556 -24.49713 -23.32156 -23.18675 -22.37895 -21.97292 -21.38747 -20.02855 -19.55496 -18.52803 -18.09395 -17.84854 -17.26980 -17.03104 -16.54948 -16.25505 -16.12948 -15.81946 -15.66993 -15.05999 -14.96932 -14.69378 -14.60379 -14.29058 -13.91024 -13.77734 -13.55093 -13.41449 -13.23320 -12.94019 -12.78932 -12.59819 -12.55446 -12.40197 -12.37730 -12.32259 -12.10106 -11.74945 -11.70996 -11.56823 -11.31365 -11.22396 -11.02005 -10.74734 -10.55774 -10.41744 -10.30123 -9.29365 -8.19959 -6.30696 0.26170 1.20228 1.41438 1.42111 1.55026 2.05865 2.40028 2.46864 2.84613 2.93144 3.14067 3.34201 3.52279 3.53019 3.88368 4.02943 4.06915 4.07428 4.12220 4.17592 4.22445 4.30234 4.43195 4.51923 4.51997 4.74613 4.77076 4.79933 4.82350 4.86008 4.87174 4.91028 4.93950 5.07242 5.14324 5.16027 5.21270 5.23320 5.30683 5.34822 5.51509 5.70445 5.82765 5.84220 5.91373 6.12831 6.22457 6.29349 6.66152 6.86321 6.87211 7.38719 8.92068 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.001738 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.734041 B =16102.942567 C =16537.892257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.072 3.928 3 H 0.094 0.906 4 C -0.136 4.136 5 C 0.133 3.867 6 H 0.097 0.903 7 N -0.679 5.679 8 C 0.517 3.483 9 O -0.536 6.536 10 C 0.502 3.498 11 O -0.547 6.547 12 N -0.686 5.686 13 C 0.127 3.873 14 C -0.106 4.106 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.064 0.936 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.041 3.959 25 N -0.506 5.506 26 C -0.013 4.013 27 C -0.154 4.154 28 C -0.183 4.183 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.421 0.579 35 H 0.419 0.581 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.066 0.934 40 H -0.003 1.003 41 H -0.003 1.003 42 H 0.263 0.737 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.110 0.890 48 H 0.104 0.896 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.293 24.032 12.615 34.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.035 4.035 3 H 0.112 0.888 4 C -0.174 4.174 5 C 0.028 3.972 6 H 0.115 0.885 7 N -0.333 5.333 8 C 0.297 3.703 9 O -0.412 6.412 10 C 0.283 3.717 11 O -0.425 6.425 12 N -0.338 5.338 13 C 0.004 3.996 14 C -0.144 4.144 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.087 4.087 25 N -0.230 5.230 26 C -0.122 4.122 27 C -0.191 4.191 28 C -0.221 4.221 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.259 0.741 35 H 0.257 0.743 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.128 0.872 46 H 0.110 0.890 47 H 0.128 0.872 48 H 0.122 0.878 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.972 24.228 12.800 34.506 hybrid contribution 0.524 -1.385 -0.565 1.585 sum -20.449 22.843 12.235 33.010 Atomic orbital electron populations 1.22271 0.94152 1.02170 1.03286 1.22429 0.95361 0.98717 0.87037 0.88777 1.23175 0.95581 0.99895 0.98796 1.22238 0.99732 0.85131 0.90079 0.88533 1.45628 1.13286 1.28157 1.46200 1.19982 0.83639 0.84431 0.82213 1.90776 1.45578 1.64361 1.40496 1.20289 0.83305 0.85201 0.82935 1.90751 1.45405 1.65212 1.41139 1.45891 1.13733 1.28227 1.45967 1.21484 0.97660 0.85278 0.95158 1.21643 0.93334 0.98468 1.00970 1.18941 0.95542 0.92439 0.94442 1.21711 0.98920 1.11094 1.26253 0.91796 1.25977 1.02303 0.96819 0.94844 1.70097 1.38115 1.19083 1.29987 0.85394 0.79268 0.78181 0.78162 1.18491 1.20538 1.20528 1.23218 0.97508 0.92941 0.95065 1.63499 1.20949 1.21768 1.16819 1.22828 0.95544 1.05225 0.88567 1.23066 1.02765 0.94828 0.98489 1.23078 1.01981 0.96670 1.00348 0.91280 0.92444 0.90718 0.89282 0.88231 0.74126 0.74336 0.91698 0.91636 0.91456 0.91485 0.98489 0.98459 0.92796 0.91416 0.92969 0.87242 0.88959 0.87203 0.87764 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 7.69 71.98 0.55 -0.61 16 2 C 0.07 0.74 4.02 45.26 0.18 0.92 16 3 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 4 C -0.14 -1.31 6.09 31.77 0.19 -1.11 16 5 C 0.13 2.07 3.31 46.38 0.15 2.22 16 6 H 0.10 1.79 7.73 -2.39 -0.02 1.77 16 7 N -0.68 -12.34 5.22 -437.32 -2.28 -14.62 16 8 C 0.52 12.72 7.89 87.26 0.69 13.41 16 9 O -0.54 -15.28 16.22 -3.26 -0.05 -15.33 16 10 C 0.50 14.31 7.89 87.27 0.69 14.99 16 11 O -0.55 -17.79 16.48 -3.23 -0.05 -17.84 16 12 N -0.69 -19.77 5.55 -464.43 -2.58 -22.35 16 13 C 0.13 4.30 5.67 86.38 0.49 4.79 16 14 C -0.11 -4.07 5.27 30.59 0.16 -3.90 16 15 C 0.02 1.23 4.97 29.85 0.15 1.38 16 16 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 20 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 24 C 0.04 0.69 6.04 86.78 0.52 1.22 16 25 N -0.51 -7.21 5.32 -835.51 -4.45 -11.66 16 26 C -0.01 -0.16 3.52 44.92 0.16 0.00 16 27 C -0.15 -1.68 10.41 30.60 0.32 -1.36 16 28 C -0.18 -2.35 10.00 30.60 0.31 -2.04 16 29 H 0.07 0.53 6.93 -2.39 -0.02 0.51 16 30 H 0.06 0.43 6.91 -2.39 -0.02 0.41 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.71 7.61 -2.39 -0.02 0.69 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.42 6.57 7.99 -92.71 -0.74 5.83 16 35 H 0.42 10.89 7.95 -92.70 -0.74 10.15 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.05 0.89 7.81 -2.38 -0.02 0.87 16 45 H 0.11 1.14 5.62 -2.39 -0.01 1.13 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.64 398.86 -2.36 -70.00 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.52 Total: 21.63 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 5.26 Total: 0.32 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -9.02 Total: -104.69 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.11 Total: -33.17 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.64 -2.36 -70.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343337385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.257 kcal (2) G-P(sol) polarization free energy of solvation -67.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds