Wall clock time and date at job start Fri Apr 10 2020 18:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.58875 * 2 1 4 4 C 1.54933 * 110.80993 * 236.89733 * 2 1 3 5 5 C 1.54591 * 102.92117 * 204.08238 * 4 2 1 6 6 H 1.09006 * 110.39045 * 140.91519 * 5 4 2 7 7 N 1.46503 * 110.31006 * 263.03934 * 5 4 2 8 8 C 1.34768 * 119.99899 * 202.17186 * 7 5 4 9 9 O 1.21348 * 120.00409 * 359.97438 * 8 7 5 10 10 C 1.49456 * 119.99792 * 180.02562 * 8 7 5 11 11 O 1.21343 * 120.00142 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00183 * 180.02562 * 10 8 7 13 13 C 1.46493 * 120.00424 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47496 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47195 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47318 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99581 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00482 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00463 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99641 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46992 * 90.00431 * 20 18 16 22 22 H 1.48496 * 109.47044 * 210.00076 * 20 18 16 23 23 H 1.48504 * 109.47183 * 330.00344 * 20 18 16 24 24 C 1.53998 * 105.14030 * 21.95771 * 5 4 2 25 25 N 1.47904 * 107.05628 * 1.22512 * 24 5 4 26 26 C 1.46895 * 110.99577 * 214.15992 * 25 24 5 27 27 C 1.53010 * 117.49620 * 258.10149 * 26 25 24 28 28 C 1.53004 * 60.00066 * 252.51250 * 27 26 25 29 29 H 1.09002 * 109.46857 * 304.02174 * 1 2 3 30 30 H 1.09003 * 109.47370 * 64.01757 * 1 2 3 31 31 H 1.08997 * 109.47018 * 184.02025 * 1 2 3 32 32 H 1.08999 * 110.72019 * 322.44041 * 4 2 1 33 33 H 1.08995 * 110.72566 * 85.71947 * 4 2 1 34 34 H 0.96996 * 119.99615 * 22.16869 * 7 5 4 35 35 H 0.97003 * 119.99726 * 359.97438 * 12 10 8 36 36 H 1.09005 * 109.47167 * 300.00471 * 13 12 10 37 37 H 1.09005 * 109.46780 * 59.99567 * 13 12 10 38 38 H 1.08994 * 109.47128 * 300.00187 * 14 13 12 39 39 H 1.08999 * 109.46695 * 60.00039 * 14 13 12 40 40 H 1.08992 * 109.47155 * 300.00699 * 15 14 13 41 41 H 1.09005 * 109.46824 * 60.00218 * 15 14 13 42 42 H 0.97000 * 120.00022 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.91316 * 241.87426 * 24 5 4 44 44 H 1.08999 * 110.08089 * 120.67115 * 24 5 4 45 45 H 1.09001 * 115.55356 * 43.81065 * 26 25 24 46 46 H 1.08993 * 117.49806 * 0.02562 * 27 26 25 47 47 H 1.08997 * 117.49552 * 145.02384 * 27 26 25 48 48 H 1.09000 * 117.49977 * 252.51530 * 28 27 26 49 49 H 1.08991 * 117.50076 * 107.48719 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9133 1.0204 0.0000 4 6 2.0805 -0.7910 -1.2132 5 6 3.4892 -1.2156 -0.7387 6 1 3.7128 -2.2290 -1.0722 7 7 4.4986 -0.2810 -1.2425 8 6 5.7850 -0.6693 -1.3448 9 8 6.1074 -1.7930 -1.0192 10 6 6.8149 0.2843 -1.8582 11 8 6.4927 1.4081 -2.1834 12 7 8.1014 -0.1042 -1.9611 13 6 9.1108 0.8303 -2.4648 14 6 10.4784 0.1444 -2.4803 15 6 11.5325 1.1203 -3.0071 16 6 12.8794 0.4446 -3.0229 17 1 12.9741 -0.5785 -2.6901 18 6 13.9908 1.1326 -3.4612 19 7 15.1661 0.5428 -3.4755 20 14 13.8270 2.9025 -4.0362 21 1 14.0223 3.8176 -2.8830 22 1 14.8542 3.1839 -5.0709 23 1 12.4742 3.1128 -4.6115 24 6 3.4293 -1.1599 0.7991 25 7 2.0542 -0.7570 1.1655 26 6 2.0543 0.0745 2.3764 27 6 1.6558 -0.5951 3.6932 28 6 0.7010 0.3906 3.0165 29 1 -0.3633 0.5750 0.8518 30 1 -0.3634 0.4502 -0.9238 31 1 -0.3633 -1.0251 0.0720 32 1 1.4620 -1.6652 -1.4163 33 1 2.1464 -0.1511 -2.0931 34 1 4.2410 0.6173 -1.5024 35 1 8.3589 -1.0027 -1.7015 36 1 8.8473 1.1392 -3.4765 37 1 9.1511 1.7058 -1.8166 38 1 10.7416 -0.1640 -1.4686 39 1 10.4383 -0.7311 -3.1283 40 1 11.2690 1.4284 -4.0188 41 1 11.5726 1.9962 -2.3594 42 1 15.9481 1.0270 -3.7836 43 1 4.1432 -0.4255 1.1720 44 1 3.6530 -2.1410 1.2181 45 1 2.8226 0.8467 2.4164 46 1 1.3939 -1.6526 3.6610 47 1 2.1620 -0.2635 4.5998 48 1 0.5791 1.3706 3.4779 49 1 -0.1893 -0.0184 2.5390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343337403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:09 Heat of formation + Delta-G solvation = -46.653105 kcal Electronic energy + Delta-G solvation = -26743.801170 eV Core-core repulsion = 22899.383641 eV Total energy + Delta-G solvation = -3844.417530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98573 -39.88786 -38.50344 -36.78450 -35.82420 -34.28952 -33.31713 -31.66631 -31.50517 -29.93703 -27.67682 -26.15378 -24.87869 -22.90894 -22.65998 -22.05821 -21.05347 -20.78220 -20.54975 -20.20344 -18.50045 -17.25532 -16.77907 -16.75726 -16.20584 -16.10672 -15.51656 -15.21380 -15.06309 -14.90470 -14.55795 -14.23223 -13.81548 -13.68672 -13.63646 -13.14285 -12.81543 -12.74203 -12.55739 -12.29765 -12.11335 -11.99656 -11.93375 -11.88658 -11.81038 -11.63706 -11.19252 -11.13711 -10.93991 -10.73275 -10.46491 -10.20358 -10.00798 -9.81152 -9.68298 -9.55241 -9.25870 -9.11316 -8.91374 -8.57870 -6.08113 -4.07229 1.30676 2.20707 3.10325 3.26082 3.28979 3.32530 3.36767 3.40021 3.59920 4.01808 4.10666 4.40152 4.41980 4.44638 4.51418 4.58369 4.78079 4.79761 4.85410 4.93569 5.13732 5.21273 5.23430 5.25477 5.29794 5.40590 5.42000 5.44275 5.50924 5.53641 5.55039 5.66108 5.74997 5.82142 5.90003 5.92032 6.11975 6.36143 6.37757 6.50542 6.62395 6.71443 6.79992 7.17778 7.28753 7.31219 7.61525 7.72965 7.93466 8.48121 8.95878 9.53608 11.05055 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026452 B = 0.001828 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.283195 B =15314.585395 C =15428.590558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 H 0.056 0.944 4 C -0.127 4.127 5 C 0.132 3.868 6 H 0.105 0.895 7 N -0.700 5.700 8 C 0.510 3.490 9 O -0.515 6.515 10 C 0.500 3.500 11 O -0.528 6.528 12 N -0.690 5.690 13 C 0.111 3.889 14 C -0.115 4.115 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.073 0.927 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.031 3.969 25 N -0.484 5.484 26 C -0.008 4.008 27 C -0.161 4.161 28 C -0.172 4.172 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.412 0.588 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.352 -1.565 9.623 34.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.046 4.046 3 H 0.074 0.926 4 C -0.165 4.165 5 C 0.027 3.973 6 H 0.123 0.877 7 N -0.354 5.354 8 C 0.291 3.709 9 O -0.390 6.390 10 C 0.280 3.720 11 O -0.405 6.405 12 N -0.342 5.342 13 C -0.011 4.011 14 C -0.153 4.153 15 C -0.048 4.048 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.540 5.540 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.098 4.098 25 N -0.209 5.209 26 C -0.117 4.117 27 C -0.199 4.199 28 C -0.209 4.209 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.249 0.751 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -33.449 -2.001 9.688 34.881 hybrid contribution 0.748 1.679 -0.385 1.878 sum -32.701 -0.322 9.303 34.000 Atomic orbital electron populations 1.21825 0.93422 1.02709 1.01882 1.22760 0.96405 0.95903 0.89566 0.92596 1.22896 0.94310 1.01518 0.97768 1.21909 0.87319 0.94771 0.93298 0.87674 1.45931 1.06818 1.17598 1.65074 1.20349 0.83844 0.87789 0.78960 1.90776 1.80522 1.20167 1.47496 1.20020 0.84099 0.87595 0.80269 1.90755 1.80730 1.20236 1.48742 1.46025 1.06770 1.18275 1.63154 1.21855 0.87493 0.92249 0.99492 1.21744 0.91555 0.99968 1.02065 1.19503 0.94399 0.94862 0.96069 1.21086 0.90381 1.00874 1.43773 0.90927 1.25030 0.95207 0.98174 0.95073 1.69910 0.99144 1.37349 1.47641 0.86775 0.78227 0.85367 0.78900 1.20250 1.21344 1.18931 1.23298 0.89604 1.02431 0.94479 1.64617 1.18517 1.35966 1.01755 1.22598 0.99091 0.99042 0.90966 1.23012 1.02863 0.99284 0.94733 1.23127 0.93845 1.00542 1.03367 0.91971 0.92155 0.91691 0.88772 0.89776 0.75172 0.75106 0.91075 0.91128 0.91803 0.91759 0.96234 0.96689 0.92669 0.92745 0.89050 0.89511 0.88082 0.88776 0.88778 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.91 37.16 0.33 -0.38 16 2 C 0.06 0.38 2.90 -65.79 -0.19 0.19 16 3 H 0.06 0.37 8.02 -51.93 -0.42 -0.04 16 4 C -0.13 -0.73 6.12 -24.87 -0.15 -0.88 16 5 C 0.13 1.04 3.30 -66.57 -0.22 0.82 16 6 H 0.11 0.92 7.64 -51.93 -0.40 0.52 16 7 N -0.70 -6.47 4.98 -52.92 -0.26 -6.73 16 8 C 0.51 6.22 7.88 -11.59 -0.09 6.13 16 9 O -0.51 -7.24 16.17 5.50 0.09 -7.15 16 10 C 0.50 6.99 7.89 -11.58 -0.09 6.90 16 11 O -0.53 -8.37 16.48 5.50 0.09 -8.28 16 12 N -0.69 -9.71 5.55 -60.73 -0.34 -10.05 16 13 C 0.11 1.77 5.67 -4.05 -0.02 1.74 16 14 C -0.12 -2.12 5.27 -26.73 -0.14 -2.26 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 16 C -0.52 -14.64 9.66 -34.44 -0.33 -14.98 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 20 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 24 C 0.03 0.26 6.49 -2.75 -0.02 0.24 16 25 N -0.48 -3.56 5.12 -214.72 -1.10 -4.66 16 26 C -0.01 -0.06 4.86 -67.71 -0.33 -0.39 16 27 C -0.16 -1.03 10.46 -26.72 -0.28 -1.31 16 28 C -0.17 -0.99 9.21 -26.72 -0.25 -1.24 16 29 H 0.06 0.31 5.61 -51.93 -0.29 0.02 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.49 8.06 -51.93 -0.42 0.07 16 33 H 0.08 0.42 7.96 -51.93 -0.41 0.01 16 34 H 0.41 3.44 8.01 -40.82 -0.33 3.11 16 35 H 0.41 5.34 7.94 -40.82 -0.32 5.02 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.05 0.51 7.41 -51.93 -0.38 0.13 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.67 7.92 -51.93 -0.41 0.26 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 0.59 6.25 -51.93 -0.32 0.26 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -31.99 395.92 -9.73 -41.72 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.29 Total: 3.13 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.99 Total: -3.93 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.93 Total: -48.28 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.18 Total: -15.43 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.99 -9.73 -41.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343337403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.935 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds