Wall clock time and date at job start Fri Apr 10 2020 18:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.58875 * 2 1 4 4 C 1.54933 * 110.80993 * 236.89733 * 2 1 3 5 5 C 1.54591 * 102.92117 * 204.08238 * 4 2 1 6 6 H 1.09006 * 110.39045 * 140.91519 * 5 4 2 7 7 N 1.46503 * 110.31006 * 263.03934 * 5 4 2 8 8 C 1.34768 * 119.99899 * 202.17186 * 7 5 4 9 9 O 1.21348 * 120.00409 * 359.97438 * 8 7 5 10 10 C 1.49456 * 119.99792 * 180.02562 * 8 7 5 11 11 O 1.21343 * 120.00142 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00183 * 180.02562 * 10 8 7 13 13 C 1.46493 * 120.00424 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47496 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47195 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47318 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99581 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00482 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00463 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99641 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46992 * 90.00431 * 20 18 16 22 22 H 1.48496 * 109.47044 * 210.00076 * 20 18 16 23 23 H 1.48504 * 109.47183 * 330.00344 * 20 18 16 24 24 C 1.53998 * 105.14030 * 21.95771 * 5 4 2 25 25 N 1.47904 * 107.05628 * 1.22512 * 24 5 4 26 26 C 1.46895 * 110.99577 * 214.15992 * 25 24 5 27 27 C 1.53010 * 117.49620 * 258.10149 * 26 25 24 28 28 C 1.53004 * 60.00066 * 252.51250 * 27 26 25 29 29 H 1.09002 * 109.46857 * 304.02174 * 1 2 3 30 30 H 1.09003 * 109.47370 * 64.01757 * 1 2 3 31 31 H 1.08997 * 109.47018 * 184.02025 * 1 2 3 32 32 H 1.08999 * 110.72019 * 322.44041 * 4 2 1 33 33 H 1.08995 * 110.72566 * 85.71947 * 4 2 1 34 34 H 0.96996 * 119.99615 * 22.16869 * 7 5 4 35 35 H 0.97003 * 119.99726 * 359.97438 * 12 10 8 36 36 H 1.09005 * 109.47167 * 300.00471 * 13 12 10 37 37 H 1.09005 * 109.46780 * 59.99567 * 13 12 10 38 38 H 1.08994 * 109.47128 * 300.00187 * 14 13 12 39 39 H 1.08999 * 109.46695 * 60.00039 * 14 13 12 40 40 H 1.08992 * 109.47155 * 300.00699 * 15 14 13 41 41 H 1.09005 * 109.46824 * 60.00218 * 15 14 13 42 42 H 0.97000 * 120.00022 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.91316 * 241.87426 * 24 5 4 44 44 H 1.08999 * 110.08089 * 120.67115 * 24 5 4 45 45 H 1.09001 * 115.55356 * 43.81065 * 26 25 24 46 46 H 1.08993 * 117.49806 * 0.02562 * 27 26 25 47 47 H 1.08997 * 117.49552 * 145.02384 * 27 26 25 48 48 H 1.09000 * 117.49977 * 252.51530 * 28 27 26 49 49 H 1.08991 * 117.50076 * 107.48719 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9133 1.0204 0.0000 4 6 2.0805 -0.7910 -1.2132 5 6 3.4892 -1.2156 -0.7387 6 1 3.7128 -2.2290 -1.0722 7 7 4.4986 -0.2810 -1.2425 8 6 5.7850 -0.6693 -1.3448 9 8 6.1074 -1.7930 -1.0192 10 6 6.8149 0.2843 -1.8582 11 8 6.4927 1.4081 -2.1834 12 7 8.1014 -0.1042 -1.9611 13 6 9.1108 0.8303 -2.4648 14 6 10.4784 0.1444 -2.4803 15 6 11.5325 1.1203 -3.0071 16 6 12.8794 0.4446 -3.0229 17 1 12.9741 -0.5785 -2.6901 18 6 13.9908 1.1326 -3.4612 19 7 15.1661 0.5428 -3.4755 20 14 13.8270 2.9025 -4.0362 21 1 14.0223 3.8176 -2.8830 22 1 14.8542 3.1839 -5.0709 23 1 12.4742 3.1128 -4.6115 24 6 3.4293 -1.1599 0.7991 25 7 2.0542 -0.7570 1.1655 26 6 2.0543 0.0745 2.3764 27 6 1.6558 -0.5951 3.6932 28 6 0.7010 0.3906 3.0165 29 1 -0.3633 0.5750 0.8518 30 1 -0.3634 0.4502 -0.9238 31 1 -0.3633 -1.0251 0.0720 32 1 1.4620 -1.6652 -1.4163 33 1 2.1464 -0.1511 -2.0931 34 1 4.2410 0.6173 -1.5024 35 1 8.3589 -1.0027 -1.7015 36 1 8.8473 1.1392 -3.4765 37 1 9.1511 1.7058 -1.8166 38 1 10.7416 -0.1640 -1.4686 39 1 10.4383 -0.7311 -3.1283 40 1 11.2690 1.4284 -4.0188 41 1 11.5726 1.9962 -2.3594 42 1 15.9481 1.0270 -3.7836 43 1 4.1432 -0.4255 1.1720 44 1 3.6530 -2.1410 1.2181 45 1 2.8226 0.8467 2.4164 46 1 1.3939 -1.6526 3.6610 47 1 2.1620 -0.2635 4.5998 48 1 0.5791 1.3706 3.4779 49 1 -0.1893 -0.0184 2.5390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343337403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:08 Heat of formation + Delta-G solvation = -70.081831 kcal Electronic energy + Delta-G solvation = -26744.817116 eV Core-core repulsion = 22899.383641 eV Total energy + Delta-G solvation = -3845.433475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.92100 -40.65155 -39.48521 -37.47322 -37.11648 -35.37400 -34.84270 -33.30879 -32.18912 -30.60809 -29.30096 -26.74669 -26.11562 -24.18365 -23.28539 -22.70520 -22.30321 -21.67708 -21.40210 -21.08468 -19.62234 -18.85861 -18.14521 -17.40096 -17.23014 -16.99146 -16.52345 -16.31061 -16.08353 -15.92999 -15.46967 -15.44945 -14.96273 -14.79314 -14.76717 -14.16112 -13.83052 -13.71435 -13.64192 -13.34434 -13.15194 -12.91899 -12.80354 -12.74956 -12.70881 -12.45171 -12.33089 -12.16681 -11.91535 -11.79110 -11.71579 -11.61793 -11.34519 -11.22789 -10.98421 -10.76614 -10.75897 -10.47319 -10.30824 -9.50239 -8.28949 -6.33530 0.25934 1.22514 1.37826 1.39496 1.51215 2.05566 2.36831 2.50816 2.79108 2.85114 3.06701 3.36255 3.46674 3.55482 3.91600 3.99452 4.00119 4.09684 4.15728 4.16890 4.24347 4.34777 4.41532 4.46314 4.65730 4.71294 4.75616 4.78406 4.79568 4.84100 4.84853 4.95586 4.99887 5.00530 5.01590 5.14895 5.18468 5.21123 5.29456 5.43054 5.45136 5.54242 5.64243 5.80992 5.85545 6.07186 6.27246 6.27579 6.65066 6.74846 6.86282 7.31211 8.87553 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026452 B = 0.001828 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.283195 B =15314.585395 C =15428.590558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.060 3.940 3 H 0.052 0.948 4 C -0.118 4.118 5 C 0.131 3.869 6 H 0.099 0.901 7 N -0.683 5.683 8 C 0.515 3.485 9 O -0.536 6.536 10 C 0.503 3.497 11 O -0.545 6.545 12 N -0.688 5.688 13 C 0.124 3.876 14 C -0.105 4.105 15 C -0.011 4.011 16 C -0.533 4.533 17 H 0.034 0.966 18 C 0.002 3.998 19 N -0.951 5.951 20 Si 0.950 3.050 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.244 1.244 24 C 0.034 3.966 25 N -0.485 5.485 26 C -0.023 4.023 27 C -0.164 4.164 28 C -0.158 4.158 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.418 0.582 35 H 0.418 0.582 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.266 0.734 43 H 0.040 0.960 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.028 -0.055 9.360 37.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.048 4.048 3 H 0.070 0.930 4 C -0.156 4.156 5 C 0.027 3.973 6 H 0.117 0.883 7 N -0.337 5.337 8 C 0.295 3.705 9 O -0.413 6.413 10 C 0.283 3.717 11 O -0.424 6.424 12 N -0.340 5.340 13 C 0.001 3.999 14 C -0.143 4.143 15 C -0.049 4.049 16 C -0.571 4.571 17 H 0.053 0.947 18 C -0.195 4.195 19 N -0.592 5.592 20 Si 0.774 3.226 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.167 1.167 24 C -0.095 4.095 25 N -0.210 5.210 26 C -0.132 4.132 27 C -0.202 4.202 28 C -0.195 4.195 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.256 0.744 35 H 0.256 0.744 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -36.178 -0.494 9.436 37.392 hybrid contribution 1.562 1.120 -0.243 1.938 sum -34.616 0.627 9.193 35.821 Atomic orbital electron populations 1.21797 0.92307 1.02709 1.02597 1.22840 0.97235 0.95560 0.89145 0.92976 1.22904 0.92605 1.02098 0.97978 1.22011 0.88042 0.94193 0.93074 0.88298 1.45911 1.06014 1.18070 1.63681 1.20022 0.84339 0.87085 0.79036 1.90776 1.80893 1.20811 1.48842 1.20267 0.84159 0.87569 0.79675 1.90745 1.81023 1.21045 1.49556 1.45904 1.06728 1.18308 1.63091 1.21553 0.86384 0.92102 0.99833 1.21524 0.91949 0.99070 1.01738 1.19460 0.92904 0.95676 0.96837 1.21475 0.93089 0.99664 1.42899 0.94741 1.26035 0.94713 1.03344 0.95367 1.70068 1.00217 1.39583 1.49326 0.85655 0.79170 0.79144 0.78664 1.19215 1.21184 1.16688 1.23197 0.90058 1.01601 0.94641 1.64645 1.17597 1.36442 1.02323 1.22635 1.00008 0.99290 0.91250 1.23048 1.03257 0.99231 0.94671 1.23172 0.93160 1.00815 1.02355 0.91894 0.90937 0.91914 0.87719 0.88499 0.74398 0.74444 0.90853 0.90923 0.91855 0.91792 0.95617 0.95796 0.92531 0.94142 0.89875 0.90332 0.88561 0.88197 0.87721 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.91 71.98 0.64 -0.44 16 2 C 0.06 0.63 2.90 45.26 0.13 0.76 16 3 H 0.05 0.61 8.02 -2.39 -0.02 0.59 16 4 C -0.12 -1.11 6.12 31.80 0.19 -0.91 16 5 C 0.13 1.91 3.30 45.87 0.15 2.06 16 6 H 0.10 1.63 7.64 -2.38 -0.02 1.61 16 7 N -0.68 -11.76 4.98 -439.70 -2.19 -13.95 16 8 C 0.51 12.05 7.88 87.27 0.69 12.74 16 9 O -0.54 -14.75 16.17 -3.24 -0.05 -14.80 16 10 C 0.50 13.39 7.89 87.27 0.69 14.08 16 11 O -0.55 -16.43 16.48 -3.23 -0.05 -16.49 16 12 N -0.69 -18.47 5.55 -464.41 -2.58 -21.05 16 13 C 0.12 3.72 5.67 86.38 0.49 4.21 16 14 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 15 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 16 C -0.53 -30.23 9.66 25.60 0.25 -29.99 16 17 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 18 C 0.00 0.12 5.47 84.65 0.46 0.59 16 19 N -0.95 -59.56 13.96 21.44 0.30 -59.26 16 20 Si 0.95 43.77 27.47 68.60 1.88 45.65 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 24 C 0.03 0.55 6.49 86.45 0.56 1.11 16 25 N -0.49 -6.68 5.12 -833.24 -4.26 -10.94 16 26 C -0.02 -0.31 4.86 44.92 0.22 -0.09 16 27 C -0.16 -1.96 10.46 30.60 0.32 -1.64 16 28 C -0.16 -1.58 9.21 30.60 0.28 -1.30 16 29 H 0.06 0.50 5.61 -2.39 -0.01 0.48 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.83 8.06 -2.39 -0.02 0.81 16 33 H 0.10 0.70 7.96 -2.39 -0.02 0.69 16 34 H 0.42 6.28 8.01 -92.71 -0.74 5.54 16 35 H 0.42 10.42 7.94 -92.71 -0.74 9.69 16 36 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 41 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 42 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.04 0.76 7.41 -2.39 -0.02 0.75 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 1.18 7.92 -2.39 -0.02 1.16 16 46 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.11 1.01 6.25 -2.39 -0.01 1.00 16 Total: -1.00 -68.95 395.92 -2.17 -71.12 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.58 Total: 22.47 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.36 Total: -2.77 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -8.73 Total: -105.20 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.11 Total: -31.28 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -68.95 -2.17 -71.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343337403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.040 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds