Wall clock time and date at job start Fri Apr 10 2020 18:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.45703 * 2 1 4 4 C 1.53033 * 109.46237 * 119.97294 * 2 1 3 5 5 C 1.53124 * 109.27940 * 179.19402 * 4 2 1 6 6 H 1.09009 * 109.51680 * 62.25101 * 5 4 2 7 7 C 1.52994 * 109.52296 * 182.43920 * 5 4 2 8 8 O 1.42907 * 109.46895 * 184.68429 * 7 5 4 9 9 C 1.53116 * 109.16247 * 302.34938 * 5 4 2 10 10 C 1.53041 * 109.27931 * 57.64892 * 9 5 4 11 11 N 1.46845 * 109.52476 * 300.82188 * 10 9 5 12 12 C 1.46900 * 110.99716 * 185.83615 * 11 10 9 13 13 C 1.50700 * 109.47028 * 75.50563 * 12 11 10 14 14 O 1.21288 * 119.99632 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00282 * 179.97438 * 13 12 11 16 16 C 1.46502 * 120.00193 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47273 * 89.99892 * 16 15 13 18 18 H 1.07999 * 119.99941 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99944 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00012 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00218 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47076 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47184 * 210.00321 * 21 19 17 24 24 H 1.48504 * 109.47152 * 329.99950 * 21 19 17 25 25 C 1.46504 * 120.00015 * 359.97438 * 15 13 12 26 26 C 1.53001 * 109.47036 * 89.99940 * 25 15 13 27 27 C 1.47196 * 109.46836 * 180.02562 * 26 25 15 28 28 N 7.08214 * 80.95491 * 303.49243 * 2 1 3 29 29 H 1.09003 * 109.46957 * 171.86141 * 1 2 3 30 30 H 1.08994 * 109.47414 * 291.86403 * 1 2 3 31 31 H 1.08998 * 109.47221 * 51.86521 * 1 2 3 32 32 H 1.08999 * 109.50393 * 59.25559 * 4 2 1 33 33 H 1.08997 * 109.53811 * 299.15266 * 4 2 1 34 34 H 1.08997 * 109.47639 * 304.68556 * 7 5 4 35 35 H 1.09002 * 109.46958 * 64.68651 * 7 5 4 36 36 H 0.96705 * 113.99910 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.49992 * 297.70990 * 9 5 4 38 38 H 1.08996 * 109.50572 * 177.59441 * 9 5 4 39 39 H 1.09003 * 109.46099 * 180.80412 * 10 9 5 40 40 H 1.09004 * 109.44832 * 60.83826 * 10 9 5 41 41 H 1.08999 * 109.46854 * 195.49829 * 12 11 10 42 42 H 1.09001 * 109.47525 * 315.50197 * 12 11 10 43 43 H 1.09006 * 109.46832 * 209.99538 * 16 15 13 44 44 H 1.09000 * 109.47146 * 329.99928 * 16 15 13 45 45 H 0.96997 * 120.00239 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.47564 * 210.00166 * 25 15 13 47 47 H 1.09000 * 109.46876 * 330.00431 * 25 15 13 48 48 H 1.08997 * 109.47128 * 300.00492 * 26 25 15 49 49 H 1.09000 * 109.46887 * 60.00498 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7360 1.2356 6 1 3.9456 0.2871 1.2672 7 6 4.0860 -1.5084 2.4517 8 8 5.5122 -1.4294 2.4970 9 6 4.0548 -1.4187 -0.0467 10 6 3.4864 -0.6776 -1.2591 11 7 2.0193 -0.6917 -1.1994 12 6 1.4373 -0.1105 -2.4166 13 6 1.5529 -1.0976 -3.5495 14 8 2.0696 -2.1786 -3.3614 15 7 1.0821 -0.7791 -4.7714 16 6 1.1949 -1.7385 -5.8728 17 6 -0.0320 -2.6130 -5.9050 18 1 -0.8170 -2.4689 -5.1776 19 6 -0.1517 -3.5977 -6.8626 20 7 -1.2222 -4.3612 -6.8904 21 14 1.2066 -3.8475 -8.1204 22 1 2.1939 -4.8246 -7.5954 23 1 0.6221 -4.3646 -9.3840 24 1 1.8834 -2.5518 -8.3820 25 6 0.4574 0.5265 -4.9984 26 6 1.5249 1.5348 -5.4281 27 6 0.8973 2.8467 -5.6555 28 7 0.4166 3.8595 -5.8328 29 1 -0.3633 -1.0174 -0.1455 30 1 -0.3634 0.3827 0.9537 31 1 -0.3633 0.6346 -0.8083 32 1 1.6659 -1.7447 1.2576 33 1 1.6895 -0.1987 2.1403 34 1 3.6691 -1.0749 3.3607 35 1 3.7822 -2.5523 2.3745 36 1 5.9085 -1.8983 3.2442 37 1 3.7125 -2.4535 -0.0595 38 1 5.1439 -1.3946 -0.0832 39 1 3.8175 -1.1698 -2.1736 40 1 3.8404 0.3533 -1.2530 41 1 0.3866 0.1209 -2.2422 42 1 1.9726 0.8032 -2.6748 43 1 1.2820 -1.1997 -6.8164 44 1 2.0792 -2.3585 -5.7255 45 1 -1.3066 -5.0538 -7.5642 46 1 -0.2952 0.4380 -5.7819 47 1 -0.0152 0.8681 -4.0775 48 1 2.2775 1.6233 -4.6446 49 1 1.9975 1.1932 -6.3490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344147461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:12 Heat of formation + Delta-G solvation = -54.432045 kcal Electronic energy + Delta-G solvation = -28391.935918 eV Core-core repulsion = 24547.181068 eV Total energy + Delta-G solvation = -3844.754850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.04009 -38.79579 -37.07542 -36.81597 -35.26424 -33.84013 -32.77349 -32.39088 -30.99550 -29.24114 -27.73383 -26.72342 -25.24514 -24.00782 -22.83644 -22.14149 -20.63296 -19.81134 -18.49751 -17.74555 -17.54595 -16.82380 -16.67533 -15.98310 -15.71533 -15.38045 -14.98480 -14.71261 -14.59571 -14.43476 -14.05338 -13.89733 -13.81118 -13.39370 -13.04978 -12.83294 -12.58280 -12.52200 -12.44101 -12.31533 -12.19682 -11.96521 -11.87041 -11.77619 -11.56764 -11.49594 -11.07014 -11.03153 -10.85586 -10.72552 -10.55857 -10.49504 -10.28946 -10.18555 -10.07761 -9.55802 -9.04686 -8.59906 -8.16098 -7.84235 -6.09382 -4.08511 2.67207 2.75178 3.27398 3.29378 3.33270 3.35671 3.45455 3.88333 3.94443 4.23199 4.38255 4.60664 4.65858 4.83169 4.90531 4.93011 5.04717 5.07868 5.15954 5.20338 5.24403 5.24853 5.28538 5.34817 5.39593 5.45733 5.51683 5.57015 5.63734 5.73298 5.78039 5.83139 5.84821 5.98691 6.01968 6.11124 6.18846 6.20026 6.40765 6.60424 6.87996 7.07094 7.19792 7.26947 7.38446 7.50933 7.58959 8.15274 8.45373 8.92763 8.98027 9.50492 11.04001 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.003622 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.320506 B = 7729.658401 C = 9178.338212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.085 3.915 3 H 0.038 0.962 4 C -0.104 4.104 5 C -0.089 4.089 6 H 0.071 0.929 7 C 0.081 3.919 8 O -0.573 6.573 9 C -0.104 4.104 10 C 0.059 3.941 11 N -0.513 5.513 12 C 0.028 3.972 13 C 0.511 3.489 14 O -0.511 6.511 15 N -0.597 5.597 16 C 0.217 3.783 17 C -0.529 4.529 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.875 3.125 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.265 1.265 25 C 0.118 3.882 26 C -0.051 4.051 27 C 0.216 3.784 28 N -0.443 5.443 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.377 0.623 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.031 0.969 44 H 0.038 0.962 45 H 0.264 0.736 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.105 0.895 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.190 10.467 16.135 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 H 0.056 0.944 4 C -0.142 4.142 5 C -0.107 4.107 6 H 0.090 0.910 7 C 0.003 3.997 8 O -0.378 6.378 9 C -0.142 4.142 10 C -0.069 4.069 11 N -0.238 5.238 12 C -0.103 4.103 13 C 0.296 3.704 14 O -0.384 6.384 15 N -0.330 5.330 16 C 0.096 3.904 17 C -0.567 4.567 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.702 3.298 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.190 1.190 25 C -0.008 4.008 26 C -0.093 4.093 27 C -0.102 4.102 28 N -0.120 5.120 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.223 0.777 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.043 0.957 41 H 0.123 0.877 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.115 0.885 47 H 0.094 0.906 48 H 0.123 0.877 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.420 11.075 15.355 20.720 hybrid contribution 0.980 -0.104 -0.251 1.017 sum 9.400 10.971 15.104 20.901 Atomic orbital electron populations 1.21976 0.94177 1.03311 1.01528 1.21563 0.95427 0.95049 0.90244 0.94385 1.21601 0.93922 1.02107 0.96542 1.21214 0.95239 0.99794 0.94502 0.91048 1.22235 0.80718 0.99263 0.97438 1.86488 1.20310 1.78193 1.52851 1.21530 1.00075 1.00237 0.92322 1.22145 0.86477 0.98123 1.00133 1.61522 1.07507 1.54537 1.00241 1.22201 1.02088 0.95451 0.90553 1.20251 0.79058 0.88107 0.82937 1.90683 1.42805 1.23151 1.81799 1.47901 1.58952 1.15222 1.10898 1.19684 0.98667 0.88206 0.83819 1.21318 1.03727 1.15971 1.15733 0.90663 1.24857 0.95490 0.95243 0.97387 1.69895 1.27727 1.20642 1.35230 0.86878 0.82592 0.79178 0.81161 1.19925 1.21181 1.19024 1.21298 0.94010 0.82527 1.02968 1.19910 0.99208 0.84708 1.05448 1.29030 0.93614 0.94557 0.93007 1.81176 1.09188 1.12430 1.09211 0.91012 0.92093 0.92431 0.90500 0.91552 0.93962 0.93382 0.77685 0.90857 0.91114 0.89468 0.95654 0.87702 0.92552 0.95160 0.94354 0.92569 0.88544 0.90550 0.87690 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.58 37.16 0.32 -1.18 16 2 C 0.09 0.90 2.44 -67.72 -0.17 0.74 16 3 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.10 -0.99 4.65 -26.65 -0.12 -1.11 16 5 C -0.09 -0.88 2.50 -90.50 -0.23 -1.11 16 6 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 7 C 0.08 0.69 6.43 37.15 0.24 0.93 16 8 O -0.57 -5.21 13.25 -35.23 -0.47 -5.68 16 9 C -0.10 -1.24 5.25 -26.65 -0.14 -1.38 16 10 C 0.06 0.76 5.11 -3.83 -0.02 0.74 16 11 N -0.51 -6.86 4.06 -228.12 -0.93 -7.78 16 12 C 0.03 0.37 3.87 -4.98 -0.02 0.35 16 13 C 0.51 9.18 7.38 -10.99 -0.08 9.09 16 14 O -0.51 -11.54 14.73 5.55 0.08 -11.46 16 15 N -0.60 -10.50 2.46 -175.05 -0.43 -10.93 16 16 C 0.22 4.77 4.23 -5.19 -0.02 4.75 16 17 C -0.53 -14.36 9.94 -34.44 -0.34 -14.70 16 18 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 21 Si 0.87 20.73 27.47 -169.99 -4.67 16.07 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -5.79 6.54 56.52 0.37 -5.42 16 25 C 0.12 1.51 5.17 -4.04 -0.02 1.49 16 26 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 27 C 0.22 2.49 15.43 -20.79 -0.32 2.17 16 28 N -0.44 -6.30 18.53 42.12 0.78 -5.52 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.54 6.41 -51.93 -0.33 0.20 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 1.71 9.12 45.56 0.42 2.12 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 39 H 0.09 1.33 6.69 -51.93 -0.35 0.98 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 1.26 4.69 -51.93 -0.24 1.01 16 42 H 0.06 0.59 7.05 -51.93 -0.37 0.23 16 43 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 44 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 47 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 48 H 0.11 0.82 7.22 -51.93 -0.37 0.45 16 49 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -35.23 391.14 -7.54 -42.77 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.38 Total: 0.83 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.20 Total: 2.05 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.20 Total: -50.47 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.38 Total: -17.14 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.23 -7.54 -42.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344147461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.662 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds