Wall clock time and date at job start Fri Apr 10 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.50383 * 2 1 4 4 C 1.53113 * 109.50475 * 120.12184 * 2 1 3 5 5 C 1.53126 * 109.16090 * 177.59332 * 4 2 1 6 6 H 1.08999 * 109.50164 * 62.28956 * 5 4 2 7 7 C 1.53000 * 109.50548 * 182.40302 * 5 4 2 8 8 O 1.42896 * 109.47435 * 184.99902 * 7 5 4 9 9 C 1.53037 * 109.27908 * 302.34631 * 5 4 2 10 10 N 1.46850 * 109.52125 * 59.17646 * 9 5 4 11 11 C 1.46902 * 110.99551 * 174.16326 * 10 9 5 12 12 C 1.50702 * 109.46898 * 190.25894 * 11 10 9 13 13 O 1.21283 * 120.00224 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00009 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99794 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47418 * 270.00014 * 15 14 12 17 17 H 1.08003 * 119.99532 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00028 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99900 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99822 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47144 * 90.00023 * 20 18 16 22 22 H 1.48498 * 109.46887 * 210.00177 * 20 18 16 23 23 H 1.48501 * 109.46926 * 329.99897 * 20 18 16 24 24 C 1.46496 * 120.00061 * 0.02562 * 14 12 11 25 25 C 1.52997 * 109.47294 * 89.99672 * 24 14 12 26 26 C 1.47206 * 109.47168 * 179.97438 * 25 24 14 27 27 N 8.69338 * 114.89682 * 227.99301 * 2 1 3 28 28 C 1.46845 * 111.20053 * 298.25623 * 10 9 5 29 29 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46914 * 300.07455 * 1 2 3 31 31 H 1.09003 * 109.47419 * 60.07344 * 1 2 3 32 32 H 1.09000 * 109.52485 * 297.49850 * 4 2 1 33 33 H 1.09002 * 109.52585 * 57.62748 * 4 2 1 34 34 H 1.09003 * 109.47194 * 305.00333 * 7 5 4 35 35 H 1.09002 * 109.46789 * 65.00084 * 7 5 4 36 36 H 0.96694 * 114.00241 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46229 * 299.16651 * 9 5 4 38 38 H 1.08998 * 109.46596 * 179.19600 * 9 5 4 39 39 H 1.08995 * 109.47498 * 70.25767 * 11 10 9 40 40 H 1.08999 * 109.47369 * 310.25357 * 11 10 9 41 41 H 1.08998 * 109.47404 * 30.00542 * 15 14 12 42 42 H 1.09000 * 109.46960 * 150.00371 * 15 14 12 43 43 H 0.96999 * 119.99452 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47054 * 329.99404 * 24 14 12 45 45 H 1.09004 * 109.47074 * 209.99918 * 24 14 12 46 46 H 1.09001 * 109.46832 * 60.00150 * 25 24 14 47 47 H 1.08996 * 109.46952 * 300.00131 * 25 24 14 48 48 H 1.08994 * 109.46512 * 181.75720 * 28 10 9 49 49 H 1.08994 * 109.46356 * 301.74200 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7243 1.2484 5 6 3.5712 -0.7724 1.2103 6 1 3.9678 0.2427 1.2298 7 6 4.0883 -1.5470 2.4242 8 8 5.5160 -1.4925 2.4513 9 6 4.0230 -1.4730 -0.0731 10 7 3.5092 -0.7416 -1.2383 11 6 4.0371 -1.3049 -2.4881 12 6 3.6981 -0.3879 -3.6350 13 8 3.0774 0.6340 -3.4314 14 7 4.0847 -0.7034 -4.8870 15 6 3.7547 0.1877 -6.0019 16 6 2.4221 -0.2081 -6.5841 17 1 1.8756 -1.0401 -6.1650 18 6 1.9009 0.4918 -7.6515 19 7 2.5667 1.5045 -8.1620 20 14 0.2488 0.0015 -8.3725 21 1 -0.8342 0.7426 -7.6774 22 1 0.2234 0.3305 -9.8204 23 1 0.0440 -1.4583 -8.1930 24 6 4.8339 -1.9380 -5.1331 25 6 3.8563 -3.0789 -5.4219 26 6 4.6092 -4.3194 -5.6697 27 7 5.1898 -5.2771 -5.8594 28 6 2.0409 -0.7229 -1.2484 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8894 31 1 -0.3634 0.5127 -0.8906 32 1 1.7157 -0.1879 2.1397 33 1 1.6444 -1.7393 1.2688 34 1 3.6903 -1.1016 3.3360 35 1 3.7656 -2.5860 2.3566 36 1 5.9136 -1.9641 3.1959 37 1 3.6374 -2.4924 -0.0854 38 1 5.1121 -1.4962 -0.1102 39 1 3.5915 -2.2843 -2.6620 40 1 5.1197 -1.4066 -2.4121 41 1 3.7034 1.2155 -5.6427 42 1 4.5243 0.1092 -6.7698 43 1 2.2001 1.9966 -8.9132 44 1 5.4290 -2.1833 -4.2534 45 1 5.4929 -1.7985 -5.9901 46 1 3.2613 -2.8336 -6.3016 47 1 3.1974 -3.2185 -4.5649 48 1 1.6904 -0.2014 -2.1390 49 1 1.6647 -1.7459 -1.2549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398667995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:29 Heat of formation + Delta-G solvation = -64.210003 kcal Electronic energy + Delta-G solvation = -28449.762277 eV Core-core repulsion = 24604.583424 eV Total energy + Delta-G solvation = -3845.178854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.92548 -38.72790 -36.92484 -36.64852 -35.18516 -34.18486 -32.81649 -32.49001 -30.73375 -28.60823 -26.68198 -26.52258 -25.81302 -23.88999 -23.32950 -21.85599 -20.84152 -19.77482 -18.45964 -17.55183 -17.53149 -16.64672 -16.26538 -15.85808 -15.47673 -15.33529 -15.12940 -14.58282 -14.47268 -14.30053 -14.03709 -13.92472 -13.59523 -13.29933 -13.21990 -12.77508 -12.60265 -12.51942 -12.36060 -12.27015 -12.14162 -11.86686 -11.74723 -11.45748 -11.33586 -11.24062 -11.01699 -10.97615 -10.79227 -10.63920 -10.60248 -10.38907 -10.31575 -10.16943 -10.10938 -9.65941 -8.90070 -8.47485 -8.11265 -7.79724 -6.08991 -4.14189 2.82541 2.92007 3.27969 3.32873 3.35017 3.39703 3.54939 3.92993 4.04710 4.31656 4.42818 4.66429 4.74903 4.87266 4.93864 5.03934 5.10709 5.17640 5.24040 5.27069 5.30124 5.36249 5.39555 5.43842 5.50303 5.56061 5.57233 5.61077 5.70593 5.74549 5.80644 5.87120 5.96075 6.08063 6.15286 6.18457 6.20875 6.41155 6.47364 6.92502 7.16442 7.25328 7.37542 7.41769 7.46733 7.67869 7.86785 8.16982 8.31268 8.85113 9.04975 9.51471 10.99051 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.003728 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.994513 B = 7509.717909 C = 8951.089388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.082 0.918 4 C -0.109 4.109 5 C -0.084 4.084 6 H 0.088 0.912 7 C 0.082 3.918 8 O -0.571 6.571 9 C 0.067 3.933 10 N -0.520 5.520 11 C 0.035 3.965 12 C 0.509 3.491 13 O -0.513 6.513 14 N -0.600 5.600 15 C 0.246 3.754 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.892 5.892 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.124 3.876 25 C -0.053 4.053 26 C 0.219 3.781 27 N -0.453 5.453 28 C 0.054 3.946 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.377 0.623 37 H 0.027 0.973 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.131 0.869 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -7.440 19.090 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.146 4.146 5 C -0.103 4.103 6 H 0.106 0.894 7 C 0.004 3.996 8 O -0.376 6.376 9 C -0.061 4.061 10 N -0.244 5.244 11 C -0.097 4.097 12 C 0.295 3.705 13 O -0.388 6.388 14 N -0.333 5.333 15 C 0.127 3.873 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.003 4.003 25 C -0.095 4.095 26 C -0.099 4.099 27 N -0.131 5.131 28 C -0.073 4.073 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.223 0.777 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.149 0.851 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.028 -7.308 18.234 19.748 hybrid contribution -1.400 -1.196 -0.029 1.841 sum 0.628 -8.504 18.205 20.103 Atomic orbital electron populations 1.21775 0.94959 1.01536 1.02024 1.21083 0.95058 1.00677 0.93538 0.89974 1.21650 0.93897 1.00613 0.98483 1.21159 0.95351 1.00949 0.92840 0.89380 1.22218 0.80890 0.98791 0.97718 1.86522 1.19905 1.78481 1.52674 1.22054 1.00379 0.94098 0.89562 1.61499 1.08882 1.53510 1.00511 1.22084 1.01418 0.96126 0.90023 1.20171 0.80111 0.86933 0.83281 1.90658 1.38679 1.26007 1.83460 1.48236 1.54878 1.21859 1.08350 1.19342 0.95784 0.89971 0.82225 1.21413 1.04489 1.15900 1.14907 0.92250 1.24918 0.97426 0.94828 0.96726 1.69923 1.38352 1.19923 1.24812 0.86574 0.84278 0.78793 0.78212 1.20583 1.21240 1.19894 1.21246 0.92876 0.83850 1.02331 1.20008 0.97724 0.85315 1.06421 1.29292 0.93514 0.94464 0.92584 1.81179 1.09999 1.12044 1.09858 1.22357 0.86345 0.98367 1.00233 0.93058 0.92740 0.92006 0.91829 0.92274 0.93569 0.93887 0.77708 0.95467 0.90169 0.92621 0.88478 0.93598 0.94849 0.92673 0.91020 0.89457 0.85138 0.87966 0.87959 0.95851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.20 37.16 0.34 -1.20 16 2 C -0.08 -1.02 2.88 -90.54 -0.26 -1.28 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.11 -1.05 4.57 -26.61 -0.12 -1.18 16 5 C -0.08 -0.88 2.59 -90.54 -0.23 -1.11 16 6 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 7 C 0.08 0.67 6.43 37.16 0.24 0.91 16 8 O -0.57 -5.07 13.22 -35.23 -0.47 -5.54 16 9 C 0.07 0.78 4.63 -3.83 -0.02 0.76 16 10 N -0.52 -7.40 4.39 -236.11 -1.04 -8.44 16 11 C 0.03 0.48 4.00 -4.97 -0.02 0.46 16 12 C 0.51 9.41 7.35 -10.98 -0.08 9.33 16 13 O -0.51 -11.77 13.93 5.55 0.08 -11.69 16 14 N -0.60 -10.93 2.46 -175.06 -0.43 -11.36 16 15 C 0.25 5.76 5.20 -5.19 -0.03 5.74 16 16 C -0.53 -13.40 8.92 -34.44 -0.31 -13.71 16 17 H 0.06 1.45 7.42 -52.48 -0.39 1.06 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 20 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.12 1.66 5.21 -4.05 -0.02 1.63 16 25 C -0.05 -0.66 6.03 -29.52 -0.18 -0.84 16 26 C 0.22 2.93 15.43 -20.76 -0.32 2.60 16 27 N -0.45 -7.08 18.54 42.15 0.78 -6.30 16 28 C 0.05 0.77 4.39 -3.83 -0.02 0.76 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.38 1.58 9.12 45.56 0.42 2.00 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.96 7.72 -51.93 -0.40 0.56 16 39 H 0.06 0.67 7.17 -51.93 -0.37 0.30 16 40 H 0.10 1.17 7.24 -51.93 -0.38 0.79 16 41 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 42 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 45 H 0.09 1.16 7.89 -51.93 -0.41 0.75 16 46 H 0.13 1.86 7.26 -51.93 -0.38 1.48 16 47 H 0.10 1.12 7.22 -51.93 -0.38 0.75 16 48 H 0.10 1.81 5.80 -51.93 -0.30 1.51 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -32.52 395.44 -8.02 -40.54 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.50 Total: 1.20 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.12 Total: 4.47 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.05 Total: -50.53 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.39 Total: -17.23 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.52 -8.02 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398667995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.671 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds