Wall clock time and date at job start Fri Apr 10 2020 18:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.50383 * 2 1 4 4 C 1.53113 * 109.50475 * 120.12184 * 2 1 3 5 5 C 1.53126 * 109.16090 * 177.59332 * 4 2 1 6 6 H 1.08999 * 109.50164 * 62.28956 * 5 4 2 7 7 C 1.53000 * 109.50548 * 182.40302 * 5 4 2 8 8 O 1.42896 * 109.47435 * 184.99902 * 7 5 4 9 9 C 1.53037 * 109.27908 * 302.34631 * 5 4 2 10 10 N 1.46850 * 109.52125 * 59.17646 * 9 5 4 11 11 C 1.46902 * 110.99551 * 174.16326 * 10 9 5 12 12 C 1.50702 * 109.46898 * 190.25894 * 11 10 9 13 13 O 1.21283 * 120.00224 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00009 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99794 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47418 * 270.00014 * 15 14 12 17 17 H 1.08003 * 119.99532 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00028 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99900 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99822 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47144 * 90.00023 * 20 18 16 22 22 H 1.48498 * 109.46887 * 210.00177 * 20 18 16 23 23 H 1.48501 * 109.46926 * 329.99897 * 20 18 16 24 24 C 1.46496 * 120.00061 * 0.02562 * 14 12 11 25 25 C 1.52997 * 109.47294 * 89.99672 * 24 14 12 26 26 C 1.47206 * 109.47168 * 179.97438 * 25 24 14 27 27 N 8.69338 * 114.89682 * 227.99301 * 2 1 3 28 28 C 1.46845 * 111.20053 * 298.25623 * 10 9 5 29 29 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46914 * 300.07455 * 1 2 3 31 31 H 1.09003 * 109.47419 * 60.07344 * 1 2 3 32 32 H 1.09000 * 109.52485 * 297.49850 * 4 2 1 33 33 H 1.09002 * 109.52585 * 57.62748 * 4 2 1 34 34 H 1.09003 * 109.47194 * 305.00333 * 7 5 4 35 35 H 1.09002 * 109.46789 * 65.00084 * 7 5 4 36 36 H 0.96694 * 114.00241 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46229 * 299.16651 * 9 5 4 38 38 H 1.08998 * 109.46596 * 179.19600 * 9 5 4 39 39 H 1.08995 * 109.47498 * 70.25767 * 11 10 9 40 40 H 1.08999 * 109.47369 * 310.25357 * 11 10 9 41 41 H 1.08998 * 109.47404 * 30.00542 * 15 14 12 42 42 H 1.09000 * 109.46960 * 150.00371 * 15 14 12 43 43 H 0.96999 * 119.99452 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47054 * 329.99404 * 24 14 12 45 45 H 1.09004 * 109.47074 * 209.99918 * 24 14 12 46 46 H 1.09001 * 109.46832 * 60.00150 * 25 24 14 47 47 H 1.08996 * 109.46952 * 300.00131 * 25 24 14 48 48 H 1.08994 * 109.46512 * 181.75720 * 28 10 9 49 49 H 1.08994 * 109.46356 * 301.74200 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7243 1.2484 5 6 3.5712 -0.7724 1.2103 6 1 3.9678 0.2427 1.2298 7 6 4.0883 -1.5470 2.4242 8 8 5.5160 -1.4925 2.4513 9 6 4.0230 -1.4730 -0.0731 10 7 3.5092 -0.7416 -1.2383 11 6 4.0371 -1.3049 -2.4881 12 6 3.6981 -0.3879 -3.6350 13 8 3.0774 0.6340 -3.4314 14 7 4.0847 -0.7034 -4.8870 15 6 3.7547 0.1877 -6.0019 16 6 2.4221 -0.2081 -6.5841 17 1 1.8756 -1.0401 -6.1650 18 6 1.9009 0.4918 -7.6515 19 7 2.5667 1.5045 -8.1620 20 14 0.2488 0.0015 -8.3725 21 1 -0.8342 0.7426 -7.6774 22 1 0.2234 0.3305 -9.8204 23 1 0.0440 -1.4583 -8.1930 24 6 4.8339 -1.9380 -5.1331 25 6 3.8563 -3.0789 -5.4219 26 6 4.6092 -4.3194 -5.6697 27 7 5.1898 -5.2771 -5.8594 28 6 2.0409 -0.7229 -1.2484 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8894 31 1 -0.3634 0.5127 -0.8906 32 1 1.7157 -0.1879 2.1397 33 1 1.6444 -1.7393 1.2688 34 1 3.6903 -1.1016 3.3360 35 1 3.7656 -2.5860 2.3566 36 1 5.9136 -1.9641 3.1959 37 1 3.6374 -2.4924 -0.0854 38 1 5.1121 -1.4962 -0.1102 39 1 3.5915 -2.2843 -2.6620 40 1 5.1197 -1.4066 -2.4121 41 1 3.7034 1.2155 -5.6427 42 1 4.5243 0.1092 -6.7698 43 1 2.2001 1.9966 -8.9132 44 1 5.4290 -2.1833 -4.2534 45 1 5.4929 -1.7985 -5.9901 46 1 3.2613 -2.8336 -6.3016 47 1 3.1974 -3.2185 -4.5649 48 1 1.6904 -0.2014 -2.1390 49 1 1.6647 -1.7459 -1.2549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398667995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:28 Heat of formation + Delta-G solvation = -87.582813 kcal Electronic energy + Delta-G solvation = -28450.775798 eV Core-core repulsion = 24604.583424 eV Total energy + Delta-G solvation = -3846.192375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.12980 -39.87216 -37.98665 -37.50020 -36.61754 -35.25685 -34.69427 -33.33601 -32.08703 -30.09954 -28.13101 -27.48252 -26.54677 -25.14420 -24.90223 -23.14093 -21.68202 -20.66808 -19.83985 -18.96853 -18.14695 -18.08901 -17.84726 -17.14785 -16.56706 -16.52155 -16.12173 -16.06164 -15.63487 -15.42224 -15.11593 -14.94308 -14.72704 -14.40683 -14.23625 -14.11167 -13.86684 -13.59479 -13.51840 -13.41526 -13.32655 -13.18398 -12.94768 -12.79575 -12.72422 -12.53207 -12.45602 -12.19424 -12.13127 -11.85962 -11.75335 -11.55140 -11.51249 -11.26692 -11.20711 -10.78178 -10.54704 -10.35520 -9.43690 -9.14323 -8.12779 -6.24760 1.43440 1.45819 1.53830 1.69016 1.83984 1.98925 2.23099 2.47041 2.95332 3.18537 3.19440 3.37418 3.78459 3.86918 3.95139 4.04751 4.12165 4.13357 4.18210 4.32668 4.37379 4.45356 4.52805 4.57172 4.60881 4.70229 4.71885 4.77358 4.80361 4.85560 4.87450 4.96473 5.02494 5.10188 5.14171 5.17167 5.28360 5.33327 5.38350 5.45187 5.56189 5.68298 5.91782 6.09585 6.16766 6.26294 6.60268 6.81406 6.87810 7.01248 7.40651 7.61144 8.94607 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.003728 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.994513 B = 7509.717909 C = 8951.089388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 H 0.054 0.946 4 C -0.099 4.099 5 C -0.086 4.086 6 H 0.061 0.939 7 C 0.087 3.913 8 O -0.594 6.594 9 C 0.071 3.929 10 N -0.544 5.544 11 C 0.045 3.955 12 C 0.503 3.497 13 O -0.568 6.568 14 N -0.601 5.601 15 C 0.261 3.739 16 C -0.527 4.527 17 H 0.068 0.932 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.955 3.045 21 H -0.285 1.285 22 H -0.286 1.286 23 H -0.255 1.255 24 C 0.119 3.881 25 C -0.041 4.041 26 C 0.247 3.753 27 N -0.488 5.488 28 C 0.059 3.941 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.122 0.878 41 H -0.004 1.004 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.115 0.885 47 H 0.126 0.874 48 H 0.059 0.941 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -10.431 21.233 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 H 0.073 0.927 4 C -0.137 4.137 5 C -0.105 4.105 6 H 0.080 0.920 7 C 0.009 3.991 8 O -0.402 6.402 9 C -0.056 4.056 10 N -0.268 5.268 11 C -0.086 4.086 12 C 0.291 3.709 13 O -0.447 6.447 14 N -0.333 5.333 15 C 0.140 3.860 16 C -0.566 4.566 17 H 0.086 0.914 18 C -0.190 4.190 19 N -0.572 5.572 20 Si 0.781 3.219 21 H -0.212 1.212 22 H -0.211 1.211 23 H -0.178 1.178 24 C -0.006 4.006 25 C -0.082 4.082 26 C -0.070 4.070 27 N -0.166 5.166 28 C -0.068 4.068 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.246 0.754 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.014 0.986 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.133 0.867 47 H 0.144 0.856 48 H 0.077 0.923 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.706 -10.363 20.405 22.950 hybrid contribution -1.227 -0.205 -0.667 1.412 sum 0.479 -10.569 19.738 22.395 Atomic orbital electron populations 1.21742 0.93961 1.02326 1.01824 1.21057 0.95912 0.99275 0.94137 0.92745 1.21572 0.93342 1.01278 0.97478 1.21158 0.95842 0.99860 0.93599 0.92029 1.22162 0.80686 0.99344 0.96910 1.86467 1.20398 1.79197 1.54155 1.22074 1.00110 0.94651 0.88788 1.61442 1.08929 1.55013 1.01464 1.22055 1.03020 0.95575 0.87925 1.21093 0.78805 0.86850 0.84135 1.90644 1.41084 1.28611 1.84317 1.48116 1.55203 1.22748 1.07188 1.18785 0.95175 0.88749 0.83325 1.21764 1.05011 1.15540 1.14282 0.91352 1.25762 1.00851 0.94907 0.97525 1.70057 1.40185 1.21354 1.25564 0.85593 0.79790 0.79352 0.77174 1.21186 1.21141 1.17847 1.21519 0.92860 0.81927 1.04301 1.19870 0.97321 0.84360 1.06697 1.29157 0.92524 0.93897 0.91424 1.81225 1.11091 1.13210 1.11069 1.22212 0.86636 0.98637 0.99362 0.91692 0.91064 0.94114 0.90253 0.90605 0.92093 0.92209 0.75428 0.93802 0.90471 0.89715 0.86009 0.98553 0.95660 0.92837 0.87222 0.89371 0.86683 0.85649 0.92260 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.20 71.98 0.66 -2.21 16 2 C -0.08 -2.00 2.88 -10.74 -0.03 -2.03 16 3 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.10 -1.68 4.57 30.67 0.14 -1.53 16 5 C -0.09 -1.61 2.59 -10.74 -0.03 -1.63 16 6 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 7 C 0.09 1.14 6.43 71.98 0.46 1.60 16 8 O -0.59 -8.99 13.22 -148.98 -1.97 -10.96 16 9 C 0.07 1.47 4.63 86.32 0.40 1.87 16 10 N -0.54 -14.88 4.39 -900.93 -3.96 -18.84 16 11 C 0.04 1.15 4.00 85.56 0.34 1.49 16 12 C 0.50 18.65 7.35 87.66 0.64 19.29 16 13 O -0.57 -27.40 13.93 -3.04 -0.04 -27.44 16 14 N -0.60 -21.82 2.46 -826.15 -2.03 -23.84 16 15 C 0.26 12.72 5.20 85.64 0.45 13.17 16 16 C -0.53 -27.20 8.92 25.60 0.23 -26.97 16 17 H 0.07 3.32 7.42 -2.91 -0.02 3.30 16 18 C 0.01 0.44 5.46 84.66 0.46 0.91 16 19 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 20 Si 0.96 42.58 29.54 68.60 2.03 44.60 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 24 C 0.12 2.93 5.21 86.38 0.45 3.38 16 25 C -0.04 -0.92 6.03 28.79 0.17 -0.75 16 26 C 0.25 5.94 15.43 89.44 1.38 7.32 16 27 N -0.49 -14.19 18.54 20.01 0.37 -13.81 16 28 C 0.06 1.65 4.39 86.33 0.38 2.03 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.40 2.21 9.12 -74.06 -0.68 1.53 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 1.66 7.72 -2.39 -0.02 1.64 16 39 H 0.09 1.70 7.17 -2.39 -0.02 1.68 16 40 H 0.12 2.52 7.24 -2.39 -0.02 2.50 16 41 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 42 H 0.03 1.26 7.89 -2.39 -0.02 1.24 16 43 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.11 1.93 6.44 -2.39 -0.02 1.92 16 45 H 0.09 2.20 7.89 -2.38 -0.02 2.18 16 46 H 0.12 3.07 7.26 -2.39 -0.02 3.05 16 47 H 0.13 2.28 7.22 -2.39 -0.02 2.26 16 48 H 0.06 2.19 5.80 -2.39 -0.01 2.18 16 49 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -75.01 395.44 1.06 -73.95 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.27 Total: 14.47 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.11 Total: 15.93 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -5.33 Total: -110.56 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -2.01 Total: -38.40 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -75.01 1.06 -73.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398667995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.632 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds