Wall clock time and date at job start Fri Apr 10 2020 18:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 109.47314 * 2 1 4 4 O 1.21283 * 119.99480 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00336 * 180.02562 * 3 2 1 6 6 C 1.46925 * 120.63036 * 0.02562 * 5 3 2 7 7 C 1.53188 * 108.77462 * 126.36988 * 6 5 3 8 8 C 1.53040 * 109.33851 * 54.62203 * 7 6 5 9 9 C 1.53038 * 109.53906 * 298.68026 * 8 7 6 10 10 H 1.09005 * 109.49935 * 301.35340 * 9 8 7 11 11 C 1.50696 * 109.49771 * 181.28453 * 9 8 7 12 12 O 1.21276 * 120.00433 * 325.71735 * 11 9 8 13 13 N 1.34781 * 119.99650 * 145.72170 * 11 9 8 14 14 C 1.46971 * 120.59118 * 185.76764 * 13 11 9 15 15 C 1.53363 * 108.63515 * 235.24748 * 14 13 11 16 16 N 1.46966 * 108.63426 * 310.57521 * 15 14 13 17 17 C 1.36940 * 120.59386 * 235.20398 * 16 15 14 18 18 H 1.08006 * 119.99604 * 144.38443 * 17 16 15 19 19 C 1.38806 * 120.00296 * 324.38350 * 17 16 15 20 20 N 1.31622 * 119.99682 * 4.08553 * 19 17 16 21 21 Si 1.86795 * 120.00194 * 184.08345 * 19 17 16 22 22 H 1.48499 * 109.47178 * 60.00234 * 21 19 17 23 23 H 1.48506 * 109.47362 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47262 * 300.00172 * 21 19 17 25 25 C 1.46962 * 118.81097 * 55.47753 * 16 15 14 26 26 C 1.46965 * 120.59748 * 5.78377 * 13 11 9 27 27 C 1.46927 * 120.63139 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.47344 * 59.99727 * 1 2 3 29 29 H 1.09002 * 109.47576 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47316 * 300.00091 * 1 2 3 31 31 H 1.09005 * 109.47106 * 240.00416 * 2 1 3 32 32 H 1.08999 * 109.47639 * 119.99646 * 2 1 3 33 33 H 1.08999 * 109.58484 * 246.16294 * 6 5 3 34 34 H 1.08999 * 109.58650 * 6.58247 * 6 5 3 35 35 H 1.09009 * 109.49636 * 174.58265 * 7 6 5 36 36 H 1.08993 * 109.50045 * 294.65213 * 7 6 5 37 37 H 1.08998 * 109.48652 * 178.64331 * 8 7 6 38 38 H 1.08999 * 109.43570 * 58.68574 * 8 7 6 39 39 H 1.09001 * 109.60958 * 115.50192 * 14 13 11 40 40 H 1.08999 * 109.74939 * 355.07808 * 14 13 11 41 41 H 1.09007 * 109.61031 * 190.83499 * 15 14 13 42 42 H 1.08997 * 109.61641 * 70.31893 * 15 14 13 43 43 H 0.96996 * 119.99687 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.61115 * 64.27053 * 25 16 15 45 45 H 1.09008 * 109.61170 * 184.77604 * 25 16 15 46 46 H 1.08993 * 109.61379 * 244.49829 * 26 13 11 47 47 H 1.09001 * 109.60489 * 4.84434 * 26 13 11 48 48 H 1.08995 * 109.58504 * 113.83776 * 27 5 3 49 49 H 1.08998 * 109.69935 * 353.48305 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3244 0.5610 -0.0017 7 6 5.2958 0.7566 -1.1699 8 6 5.9303 2.1460 -1.0742 9 6 4.8390 3.2147 -1.1686 10 1 4.3018 3.1039 -2.1106 11 6 5.4679 4.5827 -1.1060 12 8 6.4523 4.7669 -0.4221 13 7 4.9362 5.6016 -1.8101 14 6 5.6086 6.9075 -1.8597 15 6 4.6207 7.9853 -1.3965 16 7 3.3580 7.8105 -2.1279 17 6 2.8174 8.8460 -2.8425 18 1 2.3002 8.6499 -3.7702 19 6 2.9341 10.1477 -2.3747 20 7 3.6328 10.3959 -1.2872 21 14 2.0998 11.5470 -3.2885 22 1 0.6344 11.3094 -3.3262 23 1 2.3752 12.8282 -2.5900 24 1 2.6259 11.6157 -4.6755 25 6 2.6828 6.5063 -2.0737 26 6 3.6736 5.4268 -2.5416 27 6 3.8623 3.0469 0.0000 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 4.8778 0.5585 0.9374 34 1 3.7968 -0.3854 -0.1197 35 1 6.0760 -0.0034 -1.1254 36 1 4.7547 0.6679 -2.1118 37 1 6.6400 2.2786 -1.8908 38 1 6.4511 2.2420 -0.1215 39 1 5.9260 7.1170 -2.8812 40 1 6.4771 6.8999 -1.2011 41 1 5.0315 8.9728 -1.6068 42 1 4.4409 7.8813 -0.3265 43 1 3.7146 11.3055 -0.9605 44 1 2.3683 6.2994 -1.0508 45 1 1.8134 6.5167 -2.7313 46 1 3.8532 5.5308 -3.6116 47 1 3.2643 4.4381 -2.3337 48 1 4.3781 3.2469 0.9392 49 1 3.0311 3.7424 -0.1156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408213964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:46 Heat of formation + Delta-G solvation = -47.091852 kcal Electronic energy + Delta-G solvation = -29051.357962 eV Core-core repulsion = 25206.921407 eV Total energy + Delta-G solvation = -3844.436555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.69441 -39.51024 -37.46173 -36.58319 -33.91848 -33.46691 -32.68915 -31.61058 -31.12577 -29.97653 -26.99370 -26.19586 -24.87753 -23.65397 -23.26314 -22.71187 -21.43918 -20.11174 -19.06711 -18.46273 -17.51668 -17.10519 -16.27819 -16.01088 -15.89960 -15.36054 -15.00355 -14.81461 -14.33305 -14.31109 -14.03397 -13.62412 -13.47196 -13.43975 -13.29981 -13.19779 -12.89499 -12.82280 -12.44660 -12.27104 -11.97252 -11.80285 -11.60173 -11.41591 -11.22011 -11.14071 -10.95611 -10.90647 -10.71591 -10.63882 -10.56782 -10.11393 -10.04202 -9.95986 -9.87500 -9.30387 -8.82816 -8.51370 -8.20871 -6.57534 -5.81801 -3.38195 2.46532 2.66235 3.02740 3.36196 3.42017 3.42038 3.47500 4.24789 4.41394 4.46262 4.61421 4.64396 4.75867 4.82160 4.85069 4.89221 5.04494 5.14285 5.23247 5.32489 5.37325 5.41308 5.50806 5.52513 5.60954 5.64309 5.69650 5.73699 5.80894 5.81867 5.90986 5.99918 6.01238 6.13986 6.18358 6.26377 6.39332 6.44715 6.58514 6.78295 6.93047 7.20263 7.34777 7.72636 7.73555 7.93313 8.03063 8.47017 8.56068 9.18195 9.75963 10.36236 11.22817 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.003393 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.443605 B = 8251.464743 C = 9543.109722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.510 3.490 4 O -0.532 6.532 5 N -0.613 5.613 6 C 0.105 3.895 7 C -0.134 4.134 8 C -0.102 4.102 9 C -0.121 4.121 10 H 0.094 0.906 11 C 0.515 3.485 12 O -0.554 6.554 13 N -0.593 5.593 14 C 0.084 3.916 15 C 0.154 3.846 16 N -0.593 5.593 17 C -0.259 4.259 18 H 0.065 0.935 19 C 0.011 3.989 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.132 3.868 26 C 0.087 3.913 27 C 0.125 3.875 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.020 0.980 43 H 0.257 0.743 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 -23.969 0.626 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.298 3.702 4 O -0.408 6.408 5 N -0.348 5.348 6 C -0.018 4.018 7 C -0.172 4.172 8 C -0.140 4.140 9 C -0.144 4.144 10 H 0.112 0.888 11 C 0.301 3.699 12 O -0.432 6.432 13 N -0.324 5.324 14 C -0.039 4.039 15 C 0.028 3.972 16 N -0.316 5.316 17 C -0.388 4.388 18 H 0.083 0.917 19 C -0.188 4.188 20 N -0.547 5.547 21 Si 0.735 3.265 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.209 1.209 25 C 0.005 3.995 26 C -0.038 4.038 27 C 0.002 3.998 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.131 0.869 42 H 0.038 0.962 43 H 0.067 0.933 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.294 -23.156 1.062 23.217 hybrid contribution -0.341 0.751 -0.531 0.981 sum 0.953 -22.406 0.531 22.432 Atomic orbital electron populations 1.21549 0.92946 1.01492 1.03607 1.21656 0.98666 0.93844 1.04010 1.20841 0.81522 0.92014 0.75784 1.90748 1.54584 1.46500 1.49014 1.48144 1.05698 1.07055 1.73870 1.21803 0.91140 0.89550 0.99269 1.21936 0.98854 0.97747 0.98686 1.21369 0.96565 0.92248 1.03819 1.21698 0.97940 0.93631 1.01086 0.88806 1.20260 0.84202 0.85673 0.79723 1.90641 1.27501 1.84103 1.41002 1.48129 1.23649 1.12005 1.48646 1.22588 0.97369 0.82782 1.01168 1.21401 0.84860 0.97380 0.93548 1.43941 1.21470 1.07982 1.58160 1.19117 1.32434 0.85846 1.01449 0.91738 1.25356 0.98874 0.98517 0.96069 1.69837 1.41577 1.19810 1.23460 0.86326 0.79875 0.81368 0.78893 1.20777 1.21533 1.20871 1.21367 0.93347 0.86356 0.98424 1.22525 0.85085 1.00063 0.96134 1.21444 0.97684 0.83318 0.97378 0.91824 0.92157 0.91912 0.88977 0.89049 0.90982 0.89515 0.90183 0.91331 0.91271 0.90380 0.92344 0.90284 0.86897 0.96207 0.93259 0.95678 0.91493 0.91741 0.90914 0.90702 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.15 0.34 -0.77 16 2 C -0.14 -1.04 4.77 -27.88 -0.13 -1.17 16 3 C 0.51 5.97 7.70 -10.98 -0.08 5.88 16 4 O -0.53 -8.64 15.40 5.55 0.09 -8.56 16 5 N -0.61 -6.52 2.97 -172.75 -0.51 -7.03 16 6 C 0.11 0.73 6.34 -3.71 -0.02 0.71 16 7 C -0.13 -0.95 6.08 -26.61 -0.16 -1.11 16 8 C -0.10 -1.08 4.80 -26.69 -0.13 -1.21 16 9 C -0.12 -1.58 1.87 -91.64 -0.17 -1.75 16 10 H 0.09 1.17 6.20 -51.93 -0.32 0.85 16 11 C 0.51 8.97 6.70 -10.99 -0.07 8.90 16 12 O -0.55 -11.23 15.71 5.56 0.09 -11.15 16 13 N -0.59 -11.05 2.95 -172.22 -0.51 -11.56 16 14 C 0.08 1.75 6.59 -3.60 -0.02 1.72 16 15 C 0.15 3.78 5.47 -3.60 -0.02 3.76 16 16 N -0.59 -14.88 2.97 -171.77 -0.51 -15.39 16 17 C -0.26 -7.02 9.55 -15.06 -0.14 -7.16 16 18 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 19 C 0.01 0.30 5.32 -17.43 -0.09 0.20 16 20 N -0.90 -25.95 10.60 55.49 0.59 -25.36 16 21 Si 0.91 21.48 29.56 -169.99 -5.02 16.46 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.13 2.78 6.70 -3.37 -0.02 2.76 16 26 C 0.09 1.50 6.35 -3.37 -0.02 1.48 16 27 C 0.12 1.66 5.63 -3.69 -0.02 1.64 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 31 H 0.09 0.49 7.69 -51.93 -0.40 0.09 16 32 H 0.09 0.49 7.94 -51.93 -0.41 0.07 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.38 5.93 -51.93 -0.31 0.07 16 35 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.90 7.90 -51.93 -0.41 0.49 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.64 7.00 -51.93 -0.36 1.28 16 41 H 0.11 3.05 5.84 -51.93 -0.30 2.75 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.35 7.93 -51.92 -0.41 0.93 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.07 1.08 5.34 -51.93 -0.28 0.80 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.10 1.59 6.82 -51.93 -0.35 1.23 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -33.25 376.87 -9.07 -42.32 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.18 Total: 0.71 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -0.78 Total: 13.88 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.94 Total: -59.34 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.17 Total: -19.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.25 -9.07 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408213964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.771 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds