Wall clock time and date at job start Fri Apr 10 2020 18:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 109.47314 * 2 1 4 4 O 1.21283 * 119.99480 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00336 * 180.02562 * 3 2 1 6 6 C 1.46925 * 120.63036 * 0.02562 * 5 3 2 7 7 C 1.53188 * 108.77462 * 126.36988 * 6 5 3 8 8 C 1.53040 * 109.33851 * 54.62203 * 7 6 5 9 9 C 1.53038 * 109.53906 * 298.68026 * 8 7 6 10 10 H 1.09005 * 109.49935 * 301.35340 * 9 8 7 11 11 C 1.50696 * 109.49771 * 181.28453 * 9 8 7 12 12 O 1.21276 * 120.00433 * 325.71735 * 11 9 8 13 13 N 1.34781 * 119.99650 * 145.72170 * 11 9 8 14 14 C 1.46971 * 120.59118 * 185.76764 * 13 11 9 15 15 C 1.53363 * 108.63515 * 235.24748 * 14 13 11 16 16 N 1.46966 * 108.63426 * 310.57521 * 15 14 13 17 17 C 1.36940 * 120.59386 * 235.20398 * 16 15 14 18 18 H 1.08006 * 119.99604 * 144.38443 * 17 16 15 19 19 C 1.38806 * 120.00296 * 324.38350 * 17 16 15 20 20 N 1.31622 * 119.99682 * 4.08553 * 19 17 16 21 21 Si 1.86795 * 120.00194 * 184.08345 * 19 17 16 22 22 H 1.48499 * 109.47178 * 60.00234 * 21 19 17 23 23 H 1.48506 * 109.47362 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47262 * 300.00172 * 21 19 17 25 25 C 1.46962 * 118.81097 * 55.47753 * 16 15 14 26 26 C 1.46965 * 120.59748 * 5.78377 * 13 11 9 27 27 C 1.46927 * 120.63139 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.47344 * 59.99727 * 1 2 3 29 29 H 1.09002 * 109.47576 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47316 * 300.00091 * 1 2 3 31 31 H 1.09005 * 109.47106 * 240.00416 * 2 1 3 32 32 H 1.08999 * 109.47639 * 119.99646 * 2 1 3 33 33 H 1.08999 * 109.58484 * 246.16294 * 6 5 3 34 34 H 1.08999 * 109.58650 * 6.58247 * 6 5 3 35 35 H 1.09009 * 109.49636 * 174.58265 * 7 6 5 36 36 H 1.08993 * 109.50045 * 294.65213 * 7 6 5 37 37 H 1.08998 * 109.48652 * 178.64331 * 8 7 6 38 38 H 1.08999 * 109.43570 * 58.68574 * 8 7 6 39 39 H 1.09001 * 109.60958 * 115.50192 * 14 13 11 40 40 H 1.08999 * 109.74939 * 355.07808 * 14 13 11 41 41 H 1.09007 * 109.61031 * 190.83499 * 15 14 13 42 42 H 1.08997 * 109.61641 * 70.31893 * 15 14 13 43 43 H 0.96996 * 119.99687 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.61115 * 64.27053 * 25 16 15 45 45 H 1.09008 * 109.61170 * 184.77604 * 25 16 15 46 46 H 1.08993 * 109.61379 * 244.49829 * 26 13 11 47 47 H 1.09001 * 109.60489 * 4.84434 * 26 13 11 48 48 H 1.08995 * 109.58504 * 113.83776 * 27 5 3 49 49 H 1.08998 * 109.69935 * 353.48305 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3244 0.5610 -0.0017 7 6 5.2958 0.7566 -1.1699 8 6 5.9303 2.1460 -1.0742 9 6 4.8390 3.2147 -1.1686 10 1 4.3018 3.1039 -2.1106 11 6 5.4679 4.5827 -1.1060 12 8 6.4523 4.7669 -0.4221 13 7 4.9362 5.6016 -1.8101 14 6 5.6086 6.9075 -1.8597 15 6 4.6207 7.9853 -1.3965 16 7 3.3580 7.8105 -2.1279 17 6 2.8174 8.8460 -2.8425 18 1 2.3002 8.6499 -3.7702 19 6 2.9341 10.1477 -2.3747 20 7 3.6328 10.3959 -1.2872 21 14 2.0998 11.5470 -3.2885 22 1 0.6344 11.3094 -3.3262 23 1 2.3752 12.8282 -2.5900 24 1 2.6259 11.6157 -4.6755 25 6 2.6828 6.5063 -2.0737 26 6 3.6736 5.4268 -2.5416 27 6 3.8623 3.0469 0.0000 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 4.8778 0.5585 0.9374 34 1 3.7968 -0.3854 -0.1197 35 1 6.0760 -0.0034 -1.1254 36 1 4.7547 0.6679 -2.1118 37 1 6.6400 2.2786 -1.8908 38 1 6.4511 2.2420 -0.1215 39 1 5.9260 7.1170 -2.8812 40 1 6.4771 6.8999 -1.2011 41 1 5.0315 8.9728 -1.6068 42 1 4.4409 7.8813 -0.3265 43 1 3.7146 11.3055 -0.9605 44 1 2.3683 6.2994 -1.0508 45 1 1.8134 6.5167 -2.7313 46 1 3.8532 5.5308 -3.6116 47 1 3.2643 4.4381 -2.3337 48 1 4.3781 3.2469 0.9392 49 1 3.0311 3.7424 -0.1156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408213964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:45 Heat of formation + Delta-G solvation = -68.462561 kcal Electronic energy + Delta-G solvation = -29052.284666 eV Core-core repulsion = 25206.921407 eV Total energy + Delta-G solvation = -3845.363258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.78954 -40.74165 -38.75678 -37.98034 -35.71264 -34.39030 -33.41398 -33.12793 -32.61536 -31.51536 -28.79058 -27.03890 -26.10171 -25.20124 -24.42583 -24.02417 -22.62818 -21.59091 -20.00153 -19.88281 -18.84335 -18.24791 -17.88230 -17.02345 -16.96407 -16.79832 -16.53264 -16.14228 -15.60861 -15.46245 -15.17815 -15.13025 -14.97496 -14.89146 -14.60692 -14.40417 -13.97501 -13.75207 -13.62712 -13.46973 -13.04801 -12.94975 -12.81657 -12.66524 -12.50229 -12.43898 -12.36263 -12.05887 -12.02525 -11.99217 -11.91962 -11.87565 -11.77198 -11.59578 -10.96204 -10.65541 -10.59770 -9.87994 -9.70440 -8.60164 -7.90174 -5.51355 1.40436 1.46217 1.49391 1.55444 1.66698 1.89063 2.11077 2.47190 3.24741 3.40073 3.50098 3.55312 3.69189 3.82360 3.98633 4.07773 4.11966 4.18270 4.21805 4.25684 4.30545 4.36962 4.41738 4.45591 4.60357 4.62590 4.70590 4.70946 4.75842 4.79062 4.84758 4.91470 5.00956 5.01576 5.09645 5.09809 5.12435 5.20369 5.36755 5.39146 5.44823 5.47685 5.59241 5.69945 6.38699 6.40610 6.45282 7.08097 7.10269 7.18329 7.73176 8.30270 9.12170 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.003393 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.443605 B = 8251.464743 C = 9543.109722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.501 3.499 4 O -0.590 6.590 5 N -0.609 5.609 6 C 0.098 3.902 7 C -0.125 4.125 8 C -0.101 4.101 9 C -0.108 4.108 10 H 0.107 0.893 11 C 0.512 3.488 12 O -0.584 6.584 13 N -0.601 5.601 14 C 0.100 3.900 15 C 0.166 3.834 16 N -0.610 5.610 17 C -0.270 4.270 18 H 0.073 0.927 19 C -0.044 4.044 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.271 1.271 25 C 0.129 3.871 26 C 0.102 3.898 27 C 0.130 3.870 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.086 0.914 42 H -0.015 1.015 43 H 0.252 0.748 44 H 0.006 0.994 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.102 0.898 48 H 0.062 0.938 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -27.807 -0.924 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.292 3.708 4 O -0.471 6.471 5 N -0.342 5.342 6 C -0.023 4.023 7 C -0.162 4.162 8 C -0.139 4.139 9 C -0.130 4.130 10 H 0.125 0.875 11 C 0.301 3.699 12 O -0.465 6.465 13 N -0.332 5.332 14 C -0.025 4.025 15 C 0.039 3.961 16 N -0.333 5.333 17 C -0.400 4.400 18 H 0.091 0.909 19 C -0.240 4.240 20 N -0.581 5.581 21 Si 0.802 3.198 22 H -0.202 1.202 23 H -0.221 1.221 24 H -0.197 1.197 25 C 0.003 3.997 26 C -0.022 4.022 27 C 0.005 3.995 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.003 0.997 43 H 0.062 0.938 44 H 0.025 0.975 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.120 0.880 48 H 0.080 0.920 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.240 -27.070 -0.503 27.103 hybrid contribution -0.315 1.917 0.022 1.943 sum 0.925 -25.153 -0.481 25.174 Atomic orbital electron populations 1.21564 0.93897 1.02668 1.01612 1.21742 0.97746 0.90776 1.06885 1.21789 0.81206 0.93451 0.74383 1.90729 1.56060 1.48592 1.51678 1.48257 1.06303 1.06581 1.73071 1.22179 0.90807 0.89545 0.99739 1.21931 0.99505 0.95731 0.99078 1.21412 0.95719 0.93604 1.03142 1.21676 0.98583 0.91343 1.01374 0.87525 1.21095 0.83686 0.86911 0.78229 1.90621 1.29016 1.84851 1.41963 1.48210 1.24137 1.11514 1.49362 1.22173 0.96081 0.83014 1.01194 1.21064 0.85873 0.97498 0.91621 1.44171 1.22021 1.09160 1.57979 1.19502 1.31968 0.86591 1.01953 0.90906 1.26154 0.99587 1.01106 0.97127 1.70047 1.42958 1.19851 1.25233 0.85246 0.78787 0.77843 0.77946 1.20234 1.22109 1.19674 1.21496 0.94684 0.85717 0.97825 1.22412 0.83439 0.99916 0.96451 1.21126 0.96391 0.85055 0.96896 0.93780 0.89244 0.94100 0.85661 0.86097 0.90270 0.85643 0.87193 0.90420 0.91295 0.91681 0.91507 0.90679 0.89651 0.99724 0.93834 0.97550 0.90478 0.90307 0.87993 0.92006 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.20 71.98 0.66 -1.30 16 2 C -0.13 -1.42 4.77 29.85 0.14 -1.28 16 3 C 0.50 10.87 7.70 87.66 0.67 11.54 16 4 O -0.59 -19.49 15.40 -3.04 -0.05 -19.54 16 5 N -0.61 -11.62 2.97 -818.85 -2.43 -14.05 16 6 C 0.10 0.93 6.34 86.36 0.55 1.48 16 7 C -0.12 -1.19 6.08 30.67 0.19 -1.01 16 8 C -0.10 -1.88 4.80 30.62 0.15 -1.74 16 9 C -0.11 -2.67 1.87 -11.45 -0.02 -2.70 16 10 H 0.11 2.38 6.20 -2.38 -0.01 2.37 16 11 C 0.51 17.86 6.70 87.65 0.59 18.45 16 12 O -0.58 -24.08 15.71 -3.02 -0.05 -24.13 16 13 N -0.60 -22.53 2.95 -817.16 -2.41 -24.94 16 14 C 0.10 4.26 6.59 86.41 0.57 4.83 16 15 C 0.17 8.58 5.47 86.41 0.47 9.05 16 16 N -0.61 -31.51 2.97 -697.34 -2.07 -33.58 16 17 C -0.27 -14.88 9.55 84.03 0.80 -14.08 16 18 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 19 C -0.04 -2.48 5.32 84.86 0.45 -2.03 16 20 N -0.94 -55.97 10.60 21.65 0.23 -55.74 16 21 Si 0.97 44.82 29.56 68.60 2.03 46.85 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.13 5.52 6.70 86.56 0.58 6.10 16 26 C 0.10 3.43 6.35 86.56 0.55 3.98 16 27 C 0.13 3.43 5.63 86.37 0.49 3.92 16 28 H 0.04 0.78 8.10 -2.38 -0.02 0.76 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.74 8.10 -2.38 -0.02 0.72 16 31 H 0.13 0.59 7.69 -2.38 -0.02 0.57 16 32 H 0.12 0.66 7.94 -2.39 -0.02 0.64 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.13 0.29 5.93 -2.39 -0.01 0.27 16 35 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.40 7.90 -2.39 -0.02 1.38 16 39 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.07 3.25 7.00 -2.39 -0.02 3.23 16 41 H 0.09 4.89 5.84 -2.38 -0.01 4.88 16 42 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 43 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 3.10 7.93 -2.38 -0.02 3.08 16 46 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.10 2.87 5.34 -2.39 -0.01 2.85 16 48 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.07 2.26 6.82 -2.39 -0.02 2.25 16 Total: -1.00 -77.97 376.87 3.02 -74.95 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.93 Total: 14.96 kcal Atomic # 6 Polarization: 28.38 SS G_CDS: 6.84 Total: 35.22 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -6.68 Total: -128.31 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.09 Total: -43.67 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -77.97 3.02 -74.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408213964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.486 kcal (2) G-P(sol) polarization free energy of solvation -77.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds