Wall clock time and date at job start Fri Apr 10 2020 18:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47198 * 2 1 4 4 O 1.21274 * 120.00300 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00012 * 180.02562 * 3 2 1 6 6 C 1.46924 * 120.62872 * 5.71252 * 5 3 2 7 7 C 1.53197 * 108.77472 * 233.60964 * 6 5 3 8 8 C 1.53035 * 109.31157 * 305.36326 * 7 6 5 9 9 C 1.53044 * 109.53716 * 61.36708 * 8 7 6 10 10 C 1.46926 * 120.63145 * 185.71395 * 5 3 2 11 11 H 1.09001 * 109.70268 * 246.24426 * 10 5 3 12 12 C 1.50696 * 109.58851 * 6.60589 * 10 5 3 13 13 O 1.21279 * 120.00299 * 60.26204 * 12 10 5 14 14 N 1.34780 * 120.00057 * 240.27223 * 12 10 5 15 15 C 1.46962 * 120.59596 * 174.87672 * 14 12 10 16 16 C 1.53373 * 108.77591 * 235.11634 * 15 14 12 17 17 N 1.47041 * 108.59486 * 310.83614 * 16 15 14 18 18 C 1.36938 * 120.45166 * 235.06253 * 17 16 15 19 19 H 1.07998 * 119.99770 * 34.15150 * 18 17 16 20 20 C 1.38812 * 119.99846 * 214.15962 * 18 17 16 21 21 N 1.31616 * 120.00307 * 6.67779 * 20 18 17 22 22 Si 1.86810 * 119.99779 * 186.68015 * 20 18 17 23 23 H 1.48494 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46920 * 120.00054 * 22 20 18 25 25 H 1.48501 * 109.46960 * 239.99976 * 22 20 18 26 26 C 1.46962 * 118.95656 * 54.95135 * 17 16 15 27 27 C 1.46966 * 120.59095 * 354.85296 * 14 12 10 28 28 H 1.08996 * 109.47354 * 300.00556 * 1 2 3 29 29 H 1.09002 * 109.46995 * 60.00470 * 1 2 3 30 30 H 1.08997 * 109.47591 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46708 * 239.99535 * 2 1 3 32 32 H 1.09000 * 109.46941 * 120.00080 * 2 1 3 33 33 H 1.09003 * 109.58621 * 113.82630 * 6 5 3 34 34 H 1.08993 * 109.58957 * 353.39817 * 6 5 3 35 35 H 1.09004 * 109.49766 * 185.41500 * 7 6 5 36 36 H 1.09000 * 109.49630 * 65.31825 * 7 6 5 37 37 H 1.08997 * 109.46425 * 301.34557 * 8 7 6 38 38 H 1.09008 * 109.45932 * 181.38398 * 8 7 6 39 39 H 1.08998 * 109.49901 * 178.67959 * 9 8 7 40 40 H 1.09010 * 109.49548 * 58.58613 * 9 8 7 41 41 H 1.08994 * 109.60948 * 354.94125 * 15 14 12 42 42 H 1.08995 * 109.61022 * 115.28999 * 15 14 12 43 43 H 1.09005 * 109.61022 * 70.40467 * 16 15 14 44 44 H 1.08997 * 109.61123 * 190.91764 * 16 15 14 45 45 H 0.97003 * 120.00312 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.60952 * 185.13680 * 26 17 16 47 47 H 1.08997 * 109.75272 * 64.70213 * 26 17 16 48 48 H 1.09001 * 109.61057 * 244.54176 * 27 14 12 49 49 H 1.09001 * 109.61088 * 4.88179 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3232 0.5670 -0.1269 7 6 5.3173 0.6476 1.0359 8 6 5.9511 2.0402 1.0642 9 6 4.8629 3.0934 1.2853 10 6 3.8636 3.0406 0.1253 11 1 4.3608 3.3351 -0.7989 12 6 2.7170 3.9781 0.4033 13 8 2.0394 3.8292 1.3980 14 7 2.4445 4.9821 -0.4536 15 6 1.2638 5.8345 -0.2559 16 6 0.4175 5.8102 -1.5347 17 7 1.2974 6.0682 -2.6842 18 6 1.0209 7.0886 -3.5546 19 1 0.5697 8.0003 -3.1919 20 6 1.3206 6.9511 -4.9030 21 7 1.7472 5.7961 -5.3679 22 14 1.1184 8.4056 -6.0577 23 1 0.6289 9.5805 -5.2929 24 1 2.4276 8.7303 -6.6788 25 1 0.1384 8.0622 -7.1194 26 6 2.4781 5.2157 -2.8820 27 6 3.3230 5.2442 -1.6023 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.8584 0.6575 -1.0722 34 1 3.7971 -0.3869 -0.0924 35 1 6.0957 -0.1037 0.9018 36 1 4.7942 0.4667 1.9749 37 1 6.4530 2.2303 0.1155 38 1 6.6771 2.0924 1.8758 39 1 5.3178 4.0830 1.3288 40 1 4.3441 2.8894 2.2221 41 1 0.6750 5.4559 0.5796 42 1 1.5811 6.8561 -0.0467 43 1 -0.0487 4.8312 -1.6463 44 1 -0.3518 6.5803 -1.4791 45 1 1.9563 5.6999 -6.3102 46 1 3.0669 5.5944 -3.7175 47 1 2.1634 4.1931 -3.0899 48 1 3.7869 6.2244 -1.4919 49 1 4.0960 4.4774 -1.6542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408217557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:51 Heat of formation + Delta-G solvation = -29.813716 kcal Electronic energy + Delta-G solvation = -30119.272513 eV Core-core repulsion = 26275.585194 eV Total energy + Delta-G solvation = -3843.687319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -40.83882 -38.61897 -37.39355 -36.43350 -33.67657 -33.20981 -32.56105 -31.68357 -30.83519 -29.95901 -26.99586 -26.02473 -24.23587 -24.05061 -23.23960 -22.44347 -20.84503 -20.50656 -19.12687 -18.22740 -17.47008 -16.64641 -16.27673 -15.73966 -15.50746 -15.10297 -14.80102 -14.48000 -14.43402 -14.16078 -13.81351 -13.69374 -13.49790 -13.27360 -13.23236 -13.01493 -12.74171 -12.60812 -12.14663 -11.98856 -11.71377 -11.62556 -11.47125 -11.26457 -11.13945 -11.06665 -11.01535 -10.86045 -10.79432 -10.58806 -10.37547 -10.09100 -9.97076 -9.72727 -9.29884 -9.01752 -8.57205 -8.47561 -7.96055 -6.51662 -5.78749 -3.30923 2.70322 2.86278 3.35548 3.43344 3.45626 3.57364 3.63762 4.45942 4.49847 4.54698 4.67825 4.76859 4.91785 4.96115 5.03165 5.08380 5.10428 5.22237 5.33372 5.39799 5.47579 5.52816 5.57743 5.67651 5.69246 5.79775 5.81226 5.86810 5.95860 5.98231 6.04474 6.11848 6.19097 6.26344 6.30088 6.40106 6.46312 6.54793 6.64002 6.99487 7.14680 7.38894 7.44149 7.60267 7.78064 8.18618 8.37759 8.48075 8.93625 9.21626 9.81304 10.42655 11.28160 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016123 B = 0.003959 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.285677 B = 7070.077204 C = 7437.055225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.501 3.499 4 O -0.487 6.487 5 N -0.608 5.608 6 C 0.110 3.890 7 C -0.136 4.136 8 C -0.117 4.117 9 C -0.121 4.121 10 C 0.120 3.880 11 H 0.095 0.905 12 C 0.536 3.464 13 O -0.545 6.545 14 N -0.594 5.594 15 C 0.107 3.893 16 C 0.134 3.866 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.006 3.994 21 N -0.906 5.906 22 Si 0.905 3.095 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.164 3.836 27 C 0.076 3.924 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.026 0.974 44 H 0.062 0.938 45 H 0.254 0.746 46 H 0.098 0.902 47 H 0.020 0.980 48 H 0.061 0.939 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.366 -13.102 11.276 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.176 4.176 3 C 0.289 3.711 4 O -0.360 6.360 5 N -0.346 5.346 6 C -0.013 4.013 7 C -0.175 4.175 8 C -0.155 4.155 9 C -0.160 4.160 10 C 0.013 3.987 11 H 0.112 0.888 12 C 0.324 3.676 13 O -0.423 6.423 14 N -0.327 5.327 15 C -0.017 4.017 16 C 0.008 3.992 17 N -0.314 5.314 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.193 4.193 21 N -0.551 5.551 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.037 3.963 27 C -0.048 4.048 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.038 0.962 48 H 0.079 0.921 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.551 -12.692 11.612 19.210 hybrid contribution 0.146 0.591 -0.872 1.064 sum 8.697 -12.100 10.739 18.368 Atomic orbital electron populations 1.21529 0.92981 1.01205 1.03722 1.21596 0.98674 0.93819 1.03530 1.20830 0.81635 0.92143 0.76469 1.90835 1.54003 1.44795 1.46321 1.47958 1.05722 1.06014 1.74864 1.21743 0.90975 0.89822 0.98714 1.21942 0.98653 0.97721 0.99137 1.21507 0.97389 0.94217 1.02398 1.21809 0.95879 0.99920 0.98357 1.21362 0.94558 0.82556 1.00191 0.88800 1.19581 0.84137 0.80559 0.83335 1.90600 1.50356 1.72329 1.29000 1.47788 1.26698 1.31906 1.26344 1.22023 0.87103 0.92682 0.99895 1.21303 0.92307 0.98733 0.86900 1.43910 1.23907 1.35979 1.27636 1.19251 1.38152 0.93355 0.87420 0.91744 1.25261 1.00688 0.96408 0.96893 1.69943 1.49040 1.22577 1.13497 0.86178 0.77416 0.82014 0.80915 1.20188 1.21592 1.21598 1.21104 0.88371 0.94079 0.92749 1.22762 0.93311 0.99818 0.88936 0.91924 0.91772 0.92373 0.89281 0.89393 0.91073 0.89471 0.90609 0.91353 0.91451 0.91314 0.90598 0.90500 0.90236 0.92789 0.95609 0.91965 0.93620 0.88417 0.96195 0.92083 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.20 37.16 0.34 -1.33 16 2 C -0.14 -1.53 4.77 -27.89 -0.13 -1.67 16 3 C 0.50 8.03 7.38 -10.99 -0.08 7.95 16 4 O -0.49 -10.28 11.68 -19.25 -0.22 -10.50 16 5 N -0.61 -8.29 2.97 -166.54 -0.49 -8.78 16 6 C 0.11 0.97 6.35 -3.71 -0.02 0.94 16 7 C -0.14 -1.02 6.08 -26.61 -0.16 -1.18 16 8 C -0.12 -0.99 5.88 -26.69 -0.16 -1.14 16 9 C -0.12 -1.44 5.32 -26.61 -0.14 -1.58 16 10 C 0.12 1.78 3.04 -68.75 -0.21 1.57 16 11 H 0.09 1.34 5.10 -51.93 -0.26 1.08 16 12 C 0.54 10.44 4.29 -10.99 -0.05 10.39 16 13 O -0.54 -12.22 13.94 -19.25 -0.27 -12.49 16 14 N -0.59 -12.06 2.95 -172.49 -0.51 -12.57 16 15 C 0.11 2.25 6.57 -3.60 -0.02 2.23 16 16 C 0.13 3.14 6.68 -3.55 -0.02 3.12 16 17 N -0.59 -15.33 2.96 -171.97 -0.51 -15.84 16 18 C -0.25 -6.97 9.55 -15.06 -0.14 -7.11 16 19 H 0.06 1.76 7.84 -52.49 -0.41 1.35 16 20 C 0.01 0.17 5.12 -17.43 -0.09 0.08 16 21 N -0.91 -26.12 11.01 55.49 0.61 -25.51 16 22 Si 0.90 21.59 29.56 -169.99 -5.02 16.57 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.16 3.95 5.44 -3.60 -0.02 3.93 16 27 C 0.08 1.47 6.52 -3.59 -0.02 1.45 16 28 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 32 H 0.09 0.79 7.93 -51.93 -0.41 0.38 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.59 5.93 -51.93 -0.31 0.28 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.05 7.95 -51.92 -0.41 0.63 16 41 H 0.08 1.71 7.02 -51.93 -0.36 1.35 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 46 H 0.10 2.55 6.11 -51.93 -0.32 2.23 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.07 1.12 5.03 -51.93 -0.26 0.85 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -35.17 371.22 -9.95 -45.12 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.19 Total: 0.76 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: -0.94 Total: 17.65 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.90 Total: -62.70 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.49 Total: -22.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.17 -9.95 -45.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408217557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.310 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds