Wall clock time and date at job start Fri Apr 10 2020 18:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47198 * 2 1 4 4 O 1.21274 * 120.00300 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00012 * 180.02562 * 3 2 1 6 6 C 1.46924 * 120.62872 * 5.71252 * 5 3 2 7 7 C 1.53197 * 108.77472 * 233.60964 * 6 5 3 8 8 C 1.53035 * 109.31157 * 305.36326 * 7 6 5 9 9 C 1.53044 * 109.53716 * 61.36708 * 8 7 6 10 10 C 1.46926 * 120.63145 * 185.71395 * 5 3 2 11 11 H 1.09001 * 109.70268 * 246.24426 * 10 5 3 12 12 C 1.50696 * 109.58851 * 6.60589 * 10 5 3 13 13 O 1.21279 * 120.00299 * 60.26204 * 12 10 5 14 14 N 1.34780 * 120.00057 * 240.27223 * 12 10 5 15 15 C 1.46962 * 120.59596 * 174.87672 * 14 12 10 16 16 C 1.53373 * 108.77591 * 235.11634 * 15 14 12 17 17 N 1.47041 * 108.59486 * 310.83614 * 16 15 14 18 18 C 1.36938 * 120.45166 * 235.06253 * 17 16 15 19 19 H 1.07998 * 119.99770 * 34.15150 * 18 17 16 20 20 C 1.38812 * 119.99846 * 214.15962 * 18 17 16 21 21 N 1.31616 * 120.00307 * 6.67779 * 20 18 17 22 22 Si 1.86810 * 119.99779 * 186.68015 * 20 18 17 23 23 H 1.48494 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46920 * 120.00054 * 22 20 18 25 25 H 1.48501 * 109.46960 * 239.99976 * 22 20 18 26 26 C 1.46962 * 118.95656 * 54.95135 * 17 16 15 27 27 C 1.46966 * 120.59095 * 354.85296 * 14 12 10 28 28 H 1.08996 * 109.47354 * 300.00556 * 1 2 3 29 29 H 1.09002 * 109.46995 * 60.00470 * 1 2 3 30 30 H 1.08997 * 109.47591 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46708 * 239.99535 * 2 1 3 32 32 H 1.09000 * 109.46941 * 120.00080 * 2 1 3 33 33 H 1.09003 * 109.58621 * 113.82630 * 6 5 3 34 34 H 1.08993 * 109.58957 * 353.39817 * 6 5 3 35 35 H 1.09004 * 109.49766 * 185.41500 * 7 6 5 36 36 H 1.09000 * 109.49630 * 65.31825 * 7 6 5 37 37 H 1.08997 * 109.46425 * 301.34557 * 8 7 6 38 38 H 1.09008 * 109.45932 * 181.38398 * 8 7 6 39 39 H 1.08998 * 109.49901 * 178.67959 * 9 8 7 40 40 H 1.09010 * 109.49548 * 58.58613 * 9 8 7 41 41 H 1.08994 * 109.60948 * 354.94125 * 15 14 12 42 42 H 1.08995 * 109.61022 * 115.28999 * 15 14 12 43 43 H 1.09005 * 109.61022 * 70.40467 * 16 15 14 44 44 H 1.08997 * 109.61123 * 190.91764 * 16 15 14 45 45 H 0.97003 * 120.00312 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.60952 * 185.13680 * 26 17 16 47 47 H 1.08997 * 109.75272 * 64.70213 * 26 17 16 48 48 H 1.09001 * 109.61057 * 244.54176 * 27 14 12 49 49 H 1.09001 * 109.61088 * 4.88179 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3232 0.5670 -0.1269 7 6 5.3173 0.6476 1.0359 8 6 5.9511 2.0402 1.0642 9 6 4.8629 3.0934 1.2853 10 6 3.8636 3.0406 0.1253 11 1 4.3608 3.3351 -0.7989 12 6 2.7170 3.9781 0.4033 13 8 2.0394 3.8292 1.3980 14 7 2.4445 4.9821 -0.4536 15 6 1.2638 5.8345 -0.2559 16 6 0.4175 5.8102 -1.5347 17 7 1.2974 6.0682 -2.6842 18 6 1.0209 7.0886 -3.5546 19 1 0.5697 8.0003 -3.1919 20 6 1.3206 6.9511 -4.9030 21 7 1.7472 5.7961 -5.3679 22 14 1.1184 8.4056 -6.0577 23 1 0.6289 9.5805 -5.2929 24 1 2.4276 8.7303 -6.6788 25 1 0.1384 8.0622 -7.1194 26 6 2.4781 5.2157 -2.8820 27 6 3.3230 5.2442 -1.6023 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.8584 0.6575 -1.0722 34 1 3.7971 -0.3869 -0.0924 35 1 6.0957 -0.1037 0.9018 36 1 4.7942 0.4667 1.9749 37 1 6.4530 2.2303 0.1155 38 1 6.6771 2.0924 1.8758 39 1 5.3178 4.0830 1.3288 40 1 4.3441 2.8894 2.2221 41 1 0.6750 5.4559 0.5796 42 1 1.5811 6.8561 -0.0467 43 1 -0.0487 4.8312 -1.6463 44 1 -0.3518 6.5803 -1.4791 45 1 1.9563 5.6999 -6.3102 46 1 3.0669 5.5944 -3.7175 47 1 2.1634 4.1931 -3.0899 48 1 3.7869 6.2244 -1.4919 49 1 4.0960 4.4774 -1.6542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408217557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:49 Heat of formation + Delta-G solvation = -51.902432 kcal Electronic energy + Delta-G solvation = -30120.230351 eV Core-core repulsion = 26275.585194 eV Total energy + Delta-G solvation = -3844.645157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07886 -40.11154 -38.50438 -38.11875 -35.55390 -34.27095 -33.59407 -33.21952 -32.29833 -31.62778 -28.78082 -27.17346 -25.66353 -25.11824 -24.81225 -24.01441 -22.16721 -21.69895 -20.53972 -19.58520 -18.97917 -18.05961 -17.80004 -17.10438 -16.86410 -16.58617 -16.33615 -15.96160 -15.49736 -15.29685 -15.22685 -15.12924 -14.98780 -14.85549 -14.53161 -14.42507 -14.01140 -13.84483 -13.49593 -13.24702 -13.08048 -13.02504 -12.77903 -12.64923 -12.54718 -12.41028 -12.22533 -12.14819 -12.08055 -12.00258 -11.83822 -11.71008 -11.67648 -11.56180 -10.68321 -10.59693 -10.43142 -9.73592 -9.57631 -8.58930 -7.89565 -5.47801 1.46251 1.47993 1.50695 1.59102 1.70152 2.14099 2.27152 2.48873 3.25897 3.36567 3.50140 3.71614 3.78652 3.87923 3.95486 4.10501 4.14097 4.18682 4.20895 4.23442 4.29817 4.39012 4.47440 4.56700 4.62552 4.65014 4.71198 4.73893 4.80220 4.86846 4.88330 4.90386 4.99896 5.03912 5.07854 5.13518 5.20082 5.21901 5.29015 5.45329 5.50540 5.54207 5.59687 5.69453 6.37208 6.39271 6.61712 7.10395 7.20109 7.44027 7.73695 8.32644 9.15119 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016123 B = 0.003959 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.285677 B = 7070.077204 C = 7437.055225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.483 3.517 4 O -0.553 6.553 5 N -0.607 5.607 6 C 0.100 3.900 7 C -0.131 4.131 8 C -0.113 4.113 9 C -0.115 4.115 10 C 0.120 3.880 11 H 0.102 0.898 12 C 0.532 3.468 13 O -0.579 6.579 14 N -0.604 5.604 15 C 0.118 3.882 16 C 0.140 3.860 17 N -0.606 5.606 18 C -0.270 4.270 19 H 0.066 0.934 20 C -0.041 4.041 21 N -0.935 5.935 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.292 1.292 26 C 0.174 3.826 27 C 0.092 3.908 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.067 0.933 43 H -0.006 1.006 44 H 0.069 0.931 45 H 0.253 0.747 46 H 0.078 0.922 47 H -0.014 1.014 48 H 0.072 0.928 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.047 -14.476 11.492 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.273 3.727 4 O -0.430 6.430 5 N -0.343 5.343 6 C -0.020 4.020 7 C -0.169 4.169 8 C -0.151 4.151 9 C -0.154 4.154 10 C 0.014 3.986 11 H 0.119 0.881 12 C 0.322 3.678 13 O -0.459 6.459 14 N -0.337 5.337 15 C -0.006 4.006 16 C 0.014 3.986 17 N -0.330 5.330 18 C -0.400 4.400 19 H 0.084 0.916 20 C -0.237 4.237 21 N -0.581 5.581 22 Si 0.802 3.198 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.219 1.219 26 C 0.048 3.952 27 C -0.032 4.032 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.012 0.988 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.004 0.996 48 H 0.090 0.910 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.292 -14.102 11.848 21.605 hybrid contribution -0.741 0.956 -0.926 1.523 sum 10.551 -13.147 10.922 20.086 Atomic orbital electron populations 1.21502 0.94194 1.02489 1.00999 1.21662 0.97544 0.91104 1.06345 1.21814 0.82032 0.93537 0.75342 1.90807 1.55741 1.46898 1.49558 1.48207 1.06001 1.06597 1.73535 1.22184 0.90666 0.89073 1.00125 1.21946 0.98949 0.97980 0.98042 1.21537 0.96334 0.93395 1.03800 1.21809 0.95936 1.01815 0.95791 1.21380 0.93024 0.82536 1.01705 0.88088 1.20393 0.84799 0.80217 0.82372 1.90565 1.51954 1.72796 1.30558 1.47908 1.26528 1.32440 1.26867 1.21751 0.87403 0.93582 0.97876 1.21257 0.92681 0.97143 0.87563 1.44161 1.24946 1.35889 1.28024 1.19556 1.38411 0.93860 0.88170 0.91611 1.26030 1.00409 0.99039 0.98229 1.70110 1.49738 1.24512 1.13692 0.85101 0.77242 0.78990 0.78437 1.19163 1.20963 1.21943 1.20896 0.88171 0.91579 0.94591 1.22578 0.92806 1.01727 0.86107 0.94399 0.94823 0.88876 0.86280 0.86205 0.89621 0.86964 0.87271 0.92121 0.90148 0.89519 0.90118 0.92681 0.91228 0.91521 0.98759 0.91304 0.93758 0.90392 0.99634 0.90985 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.20 71.98 0.66 -2.61 16 2 C -0.13 -2.63 4.77 29.85 0.14 -2.49 16 3 C 0.48 15.45 7.38 87.65 0.65 16.10 16 4 O -0.55 -24.55 11.68 20.71 0.24 -24.31 16 5 N -0.61 -15.65 2.97 -799.20 -2.38 -18.03 16 6 C 0.10 1.38 6.35 86.36 0.55 1.93 16 7 C -0.13 -1.40 6.08 30.67 0.19 -1.22 16 8 C -0.11 -1.47 5.88 30.62 0.18 -1.29 16 9 C -0.11 -2.52 5.32 30.67 0.16 -2.36 16 10 C 0.12 3.45 3.04 44.23 0.13 3.59 16 11 H 0.10 2.70 5.10 -2.39 -0.01 2.69 16 12 C 0.53 21.12 4.29 87.66 0.38 21.49 16 13 O -0.58 -27.00 13.94 20.69 0.29 -26.71 16 14 N -0.60 -25.07 2.95 -818.02 -2.41 -27.48 16 15 C 0.12 5.18 6.57 86.42 0.57 5.75 16 16 C 0.14 6.88 6.68 86.40 0.58 7.46 16 17 N -0.61 -32.50 2.96 -698.00 -2.06 -34.56 16 18 C -0.27 -15.21 9.55 84.03 0.80 -14.41 16 19 H 0.07 3.62 7.84 -2.91 -0.02 3.59 16 20 C -0.04 -2.31 5.12 84.86 0.43 -1.87 16 21 N -0.94 -55.03 11.01 21.65 0.24 -54.80 16 22 Si 0.97 44.63 29.56 68.60 2.03 46.66 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 C 0.17 8.66 5.44 86.42 0.47 9.13 16 27 C 0.09 3.55 6.52 86.42 0.56 4.11 16 28 H 0.04 1.08 8.10 -2.39 -0.02 1.07 16 29 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.12 1.77 7.71 -2.39 -0.02 1.75 16 32 H 0.12 1.74 7.93 -2.39 -0.02 1.72 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.00 5.93 -2.39 -0.01 0.98 16 35 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.46 7.95 -2.38 -0.02 1.44 16 41 H 0.07 3.17 7.02 -2.39 -0.02 3.15 16 42 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 43 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 44 H 0.07 3.20 7.93 -2.39 -0.02 3.18 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.08 4.18 6.11 -2.38 -0.01 4.17 16 47 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 48 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 49 H 0.10 3.22 5.03 -2.39 -0.01 3.20 16 Total: -1.00 -82.19 371.22 3.33 -78.85 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.93 Total: 17.07 kcal Atomic # 6 Polarization: 36.85 SS G_CDS: 6.46 Total: 43.31 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -6.61 Total: -134.87 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: 0.53 Total: -51.02 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -82.19 3.33 -78.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408217557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.951 kcal (2) G-P(sol) polarization free energy of solvation -82.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds