Wall clock time and date at job start Fri Apr 10 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50691 * 109.47230 * 2 1 4 4 O 1.21284 * 120.00214 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00332 * 179.97438 * 3 2 1 6 6 C 1.46998 * 120.61165 * 5.71504 * 5 3 2 7 7 C 1.53191 * 108.74019 * 126.38150 * 6 5 3 8 8 C 1.53047 * 109.33466 * 54.62424 * 7 6 5 9 9 C 1.53042 * 109.53653 * 298.61603 * 8 7 6 10 10 C 1.46927 * 120.63602 * 185.68912 * 5 3 2 11 11 H 1.08996 * 109.58591 * 113.84517 * 10 5 3 12 12 C 1.50701 * 109.58359 * 353.42217 * 10 5 3 13 13 O 1.21281 * 119.99801 * 293.21812 * 12 10 5 14 14 N 1.34774 * 119.99766 * 113.22347 * 12 10 5 15 15 C 1.46958 * 120.59657 * 4.32256 * 14 12 10 16 16 C 1.53812 * 108.39957 * 124.75906 * 15 14 12 17 17 N 1.46962 * 108.57983 * 49.63797 * 16 15 14 18 18 C 1.36936 * 120.59412 * 124.62864 * 17 16 15 19 19 H 1.08007 * 119.99637 * 201.25981 * 18 17 16 20 20 C 1.38813 * 120.00261 * 21.25709 * 18 17 16 21 21 N 1.31620 * 119.99822 * 218.73064 * 20 18 17 22 22 Si 1.86794 * 119.99879 * 38.72522 * 20 18 17 23 23 H 1.48503 * 109.47286 * 95.64057 * 22 20 18 24 24 H 1.48500 * 109.47191 * 215.63921 * 22 20 18 25 25 H 1.48498 * 109.47131 * 335.63923 * 22 20 18 26 26 C 1.46969 * 118.81055 * 304.64449 * 17 16 15 27 27 C 1.46975 * 120.59088 * 184.60091 * 14 12 10 28 28 H 1.09002 * 109.47580 * 59.99904 * 1 2 3 29 29 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47119 * 300.00205 * 1 2 3 31 31 H 1.08999 * 109.47119 * 239.99795 * 2 1 3 32 32 H 1.09000 * 109.46854 * 120.00202 * 2 1 3 33 33 H 1.09005 * 109.62914 * 6.59845 * 6 5 3 34 34 H 1.08995 * 109.58435 * 246.15020 * 6 5 3 35 35 H 1.08994 * 109.49999 * 294.66191 * 7 6 5 36 36 H 1.09002 * 109.50243 * 174.58793 * 7 6 5 37 37 H 1.08997 * 109.45775 * 58.64068 * 8 7 6 38 38 H 1.09004 * 109.45847 * 178.61429 * 8 7 6 39 39 H 1.09002 * 109.49375 * 181.31619 * 9 8 7 40 40 H 1.08997 * 109.49997 * 301.41603 * 9 8 7 41 41 H 1.09005 * 109.61014 * 244.54185 * 15 14 12 42 42 H 1.08997 * 109.61191 * 5.04776 * 15 14 12 43 43 H 1.08998 * 109.74101 * 289.84278 * 16 15 14 44 44 H 1.08998 * 109.67131 * 169.38772 * 16 15 14 45 45 H 0.97002 * 119.99727 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.60880 * 295.48212 * 26 17 16 47 47 H 1.08997 * 109.74767 * 175.05819 * 26 17 16 48 48 H 1.08999 * 109.60896 * 354.94405 * 27 14 12 49 49 H 1.08993 * 109.60682 * 115.28708 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3234 0.5662 -0.1249 7 6 5.2745 0.8758 -1.2852 8 6 5.9117 2.2498 -1.0653 9 6 4.8198 3.3218 -1.0374 10 6 3.8635 3.0407 0.1259 11 1 4.3957 3.1492 1.0709 12 6 2.7107 4.0101 0.0777 13 8 2.0696 4.1396 -0.9436 14 7 2.3923 4.7332 1.1696 15 6 3.2170 4.6573 2.3836 16 6 3.6606 6.0814 2.7589 17 7 2.4790 6.9553 2.7589 18 6 2.1550 7.6893 3.8686 19 1 1.1451 8.0479 4.0028 20 6 3.1245 7.9725 4.8209 21 7 2.8158 7.9526 6.1002 22 14 4.8671 8.3815 4.2867 23 1 5.0302 9.8559 4.2167 24 1 5.8301 7.8231 5.2696 25 1 5.1263 7.7908 2.9492 26 6 1.6512 7.0269 1.5467 27 6 1.2106 5.6071 1.1695 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.7935 -0.3650 -0.3255 34 1 4.8931 0.4729 0.7996 35 1 4.7169 0.8792 -2.2217 36 1 6.0547 0.1158 -1.3290 37 1 6.4486 2.2534 -0.1167 38 1 6.6075 2.4616 -1.8772 39 1 5.2763 4.3026 -0.9041 40 1 4.2665 3.3021 -1.9762 41 1 2.6323 4.2272 3.1968 42 1 4.0933 4.0379 2.1925 43 1 4.3850 6.4455 2.0303 44 1 4.1114 6.0757 3.7513 45 1 3.4934 8.1502 6.7657 46 1 2.2324 7.4584 0.7318 47 1 0.7731 7.6442 1.7364 48 1 0.7617 5.6152 0.1763 49 1 0.4851 5.2413 1.8960 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408217559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:55 Heat of formation + Delta-G solvation = -41.156681 kcal Electronic energy + Delta-G solvation = -29967.469548 eV Core-core repulsion = 26123.290361 eV Total energy + Delta-G solvation = -3844.179187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.10738 -40.20251 -38.58182 -38.19709 -35.58822 -34.28339 -33.73199 -33.34945 -32.60919 -31.77152 -28.93323 -27.19622 -25.62791 -25.09753 -24.87131 -24.24259 -22.30637 -21.73984 -20.55196 -19.62904 -19.04973 -18.02390 -17.82623 -17.23023 -17.00424 -16.60101 -16.41815 -16.06856 -15.78291 -15.45952 -15.30404 -15.11058 -14.86300 -14.74318 -14.52214 -14.46169 -14.15800 -14.08657 -13.88130 -13.64938 -13.19492 -13.04347 -12.82574 -12.63211 -12.61484 -12.41566 -12.28143 -12.12867 -12.08748 -11.95863 -11.88221 -11.72415 -11.58679 -11.35809 -10.69275 -10.62735 -10.43210 -9.82736 -9.60842 -8.94549 -8.23198 -5.35327 1.35147 1.47791 1.48560 1.54533 1.64994 2.05172 2.29164 2.44412 2.88469 3.32601 3.32746 3.68799 3.72491 3.84188 3.91670 4.06958 4.09378 4.15349 4.16820 4.19648 4.22739 4.30700 4.41255 4.48230 4.56017 4.63103 4.64972 4.72593 4.74732 4.81281 4.82941 4.87174 4.93057 4.94080 5.01700 5.06493 5.12772 5.13325 5.19954 5.30805 5.43824 5.49495 5.56936 5.80591 6.06890 6.37046 6.57178 6.85674 7.16659 7.43180 7.60671 8.02172 8.94071 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.004148 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.910478 B = 6748.559332 C = 7522.312690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.483 3.517 4 O -0.553 6.553 5 N -0.605 5.605 6 C 0.101 3.899 7 C -0.133 4.133 8 C -0.113 4.113 9 C -0.119 4.119 10 C 0.120 3.880 11 H 0.110 0.890 12 C 0.533 3.467 13 O -0.574 6.574 14 N -0.606 5.606 15 C 0.096 3.904 16 C 0.130 3.870 17 N -0.612 5.612 18 C -0.271 4.271 19 H 0.050 0.950 20 C -0.011 4.011 21 N -0.925 5.925 22 Si 0.898 3.102 23 H -0.306 1.306 24 H -0.288 1.288 25 H -0.234 1.234 26 C 0.138 3.862 27 C 0.119 3.881 28 H 0.037 0.963 29 H 0.090 0.910 30 H 0.037 0.963 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.264 0.736 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -22.812 -14.135 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.274 3.726 4 O -0.431 6.431 5 N -0.341 5.341 6 C -0.019 4.019 7 C -0.171 4.171 8 C -0.151 4.151 9 C -0.157 4.157 10 C 0.014 3.986 11 H 0.128 0.872 12 C 0.323 3.677 13 O -0.453 6.453 14 N -0.340 5.340 15 C -0.028 4.028 16 C 0.004 3.996 17 N -0.336 5.336 18 C -0.400 4.400 19 H 0.068 0.932 20 C -0.209 4.209 21 N -0.568 5.568 22 Si 0.725 3.275 23 H -0.235 1.235 24 H -0.214 1.214 25 H -0.157 1.157 26 C 0.012 3.988 27 C -0.005 4.005 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.201 -22.250 -14.515 27.803 hybrid contribution 0.176 1.314 0.336 1.367 sum 8.377 -20.937 -14.179 26.638 Atomic orbital electron populations 1.21517 0.94125 1.02509 1.01178 1.21685 0.97551 0.90931 1.06537 1.21886 0.81947 0.93591 0.75225 1.90836 1.55653 1.46683 1.49931 1.48282 1.06146 1.06254 1.73425 1.22211 0.90774 0.88606 1.00305 1.21952 0.99388 0.97857 0.97902 1.21538 0.96227 0.93448 1.03877 1.21813 0.96554 1.01049 0.96314 1.21406 0.92924 0.82287 1.02010 0.87237 1.20386 0.84488 0.80241 0.82588 1.90582 1.53720 1.68164 1.32879 1.47890 1.27843 1.44636 1.13603 1.22527 0.95422 0.98495 0.86360 1.21848 0.88908 0.89263 0.99573 1.44370 1.29553 1.48150 1.11488 1.18724 0.94319 1.30471 0.96461 0.93240 1.25569 1.01046 1.00076 0.94249 1.70239 1.36518 1.49061 1.00941 0.86650 0.82377 0.78147 0.80352 1.23454 1.21430 1.15717 1.21351 0.95091 0.94468 0.87875 1.21726 0.87299 0.90601 1.00909 0.94409 0.89094 0.94389 0.86240 0.86017 0.86772 0.88839 0.92588 0.87247 0.89818 0.90055 0.90780 0.92944 0.92443 0.86806 0.94061 0.91749 0.92708 0.95127 0.91145 0.90526 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.20 71.98 0.66 -1.94 16 2 C -0.13 -1.97 4.83 29.84 0.14 -1.82 16 3 C 0.48 12.74 7.58 87.65 0.66 13.41 16 4 O -0.55 -21.25 11.52 20.67 0.24 -21.01 16 5 N -0.60 -12.73 2.97 -799.02 -2.38 -15.11 16 6 C 0.10 0.98 6.33 86.35 0.55 1.52 16 7 C -0.13 -1.17 6.08 30.67 0.19 -0.98 16 8 C -0.11 -1.36 5.88 30.62 0.18 -1.18 16 9 C -0.12 -2.53 5.28 30.67 0.16 -2.37 16 10 C 0.12 3.05 3.04 44.23 0.13 3.18 16 11 H 0.11 2.37 5.13 -2.39 -0.01 2.36 16 12 C 0.53 19.50 4.24 87.66 0.37 19.87 16 13 O -0.57 -25.52 13.93 20.68 0.29 -25.24 16 14 N -0.61 -23.11 2.94 -817.16 -2.40 -25.51 16 15 C 0.10 3.34 6.52 86.57 0.56 3.90 16 16 C 0.13 5.39 4.54 86.57 0.39 5.78 16 17 N -0.61 -29.52 2.79 -697.35 -1.94 -31.47 16 18 C -0.27 -15.40 9.89 84.03 0.83 -14.57 16 19 H 0.05 3.07 8.02 -2.91 -0.02 3.05 16 20 C -0.01 -0.65 4.84 84.86 0.41 -0.24 16 21 N -0.92 -56.37 13.97 21.65 0.30 -56.07 16 22 Si 0.90 42.95 26.27 68.60 1.80 44.76 16 23 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.23 -10.18 4.90 99.48 0.49 -9.69 16 26 C 0.14 5.94 6.67 86.41 0.58 6.52 16 27 C 0.12 4.92 6.60 86.41 0.57 5.49 16 28 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.12 1.14 7.45 -2.39 -0.02 1.12 16 32 H 0.12 1.17 8.12 -2.39 -0.02 1.15 16 33 H 0.11 0.52 5.97 -2.38 -0.01 0.51 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.40 7.84 -2.39 -0.02 1.38 16 41 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.11 2.97 5.07 -2.39 -0.01 2.95 16 43 H 0.04 1.65 6.85 -2.39 -0.02 1.64 16 44 H 0.06 2.82 5.12 -2.39 -0.01 2.80 16 45 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.07 2.99 7.91 -2.39 -0.02 2.97 16 48 H 0.08 3.26 6.99 -2.39 -0.02 3.24 16 49 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -82.39 365.43 3.02 -79.37 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.72 Total: 13.70 kcal Atomic # 6 Polarization: 30.17 SS G_CDS: 6.40 Total: 36.57 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -6.42 Total: -128.15 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: 0.53 Total: -46.25 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.80 Total: 44.76 kcal Total: -82.39 3.02 -79.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408217559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.215 kcal (2) G-P(sol) polarization free energy of solvation -82.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds