Wall clock time and date at job start Fri Apr 10 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46250 * 2 1 4 4 C 1.53035 * 109.45532 * 240.02247 * 2 1 3 5 5 H 1.08995 * 109.50396 * 300.79244 * 4 2 1 6 6 C 1.53001 * 109.49894 * 60.87416 * 4 2 1 7 7 O 1.42904 * 109.46702 * 184.99948 * 6 4 2 8 8 C 1.53118 * 109.27904 * 180.80865 * 4 2 1 9 9 C 1.53129 * 109.15827 * 57.65842 * 8 4 2 10 10 C 1.53039 * 109.27819 * 302.34346 * 9 8 4 11 11 N 1.46848 * 109.52320 * 59.17940 * 10 9 8 12 12 C 1.46892 * 111.00261 * 174.16209 * 11 10 9 13 13 C 1.50707 * 109.46775 * 288.16724 * 12 11 10 14 14 O 1.21280 * 120.00093 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99839 * 180.02562 * 13 12 11 16 16 C 1.46492 * 119.99853 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47259 * 269.99616 * 16 15 13 18 18 H 1.07996 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00144 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46947 * 60.00406 * 21 19 17 23 23 H 1.48502 * 109.46971 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46952 * 300.00358 * 21 19 17 25 25 C 1.46498 * 119.99875 * 359.97438 * 15 13 12 26 26 C 1.53001 * 109.47435 * 270.00213 * 25 15 13 27 27 C 1.47193 * 109.47314 * 180.02562 * 26 25 15 28 28 N 7.05820 * 79.89584 * 55.97842 * 2 1 3 29 29 H 1.09001 * 109.47422 * 306.65904 * 1 2 3 30 30 H 1.08998 * 109.46649 * 66.66183 * 1 2 3 31 31 H 1.08998 * 109.47037 * 186.65642 * 1 2 3 32 32 H 1.08998 * 109.47131 * 304.99343 * 6 4 2 33 33 H 1.08990 * 109.47459 * 65.00006 * 6 4 2 34 34 H 0.96698 * 113.99747 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.52816 * 177.55895 * 8 4 2 36 36 H 1.08997 * 109.52629 * 297.76024 * 8 4 2 37 37 H 1.08993 * 109.50162 * 62.28367 * 9 8 4 38 38 H 1.09003 * 109.50138 * 182.36525 * 9 8 4 39 39 H 1.09007 * 109.46252 * 299.16802 * 10 9 8 40 40 H 1.08992 * 109.46499 * 179.19540 * 10 9 8 41 41 H 1.09005 * 109.47635 * 168.17014 * 12 11 10 42 42 H 1.09000 * 109.47221 * 48.16304 * 12 11 10 43 43 H 1.09003 * 109.47392 * 149.99547 * 16 15 13 44 44 H 1.09008 * 109.47285 * 29.99929 * 16 15 13 45 45 H 0.97011 * 120.00223 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.47447 * 30.00347 * 25 15 13 47 47 H 1.09001 * 109.47180 * 150.00246 * 25 15 13 48 48 H 1.09003 * 109.46912 * 300.00461 * 26 25 15 49 49 H 1.09001 * 109.46910 * 59.99867 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7210 -1.2499 5 1 1.6650 -1.7445 -1.2579 6 6 1.5479 0.0129 -2.4991 7 8 1.9252 -0.7240 -3.6639 8 6 3.5708 -0.7363 -1.2357 9 6 4.0546 -1.4192 0.0467 10 6 3.4865 -0.6780 1.2591 11 7 2.0193 -0.6918 1.1995 12 6 1.4374 -0.1106 2.4165 13 6 1.6333 -1.0605 3.5700 14 8 2.2012 -2.1177 3.3952 15 7 1.1764 -0.7355 4.7957 16 6 1.3662 -1.6591 5.9168 17 6 0.1880 -2.5947 6.0020 18 1 -0.6212 -2.5101 5.2917 19 6 0.1435 -3.5594 6.9860 20 7 1.1290 -3.6628 7.8506 21 14 -1.3174 -4.7188 7.0920 22 1 -1.4299 -5.4902 5.8281 23 1 -1.1248 -5.6551 8.2284 24 1 -2.5591 -3.9323 7.3041 25 6 0.4899 0.5414 5.0067 26 6 1.5132 1.6144 5.3840 27 6 0.8233 2.8972 5.5966 28 7 0.2917 3.8878 5.7593 29 1 -0.3634 0.6136 0.8244 30 1 -0.3632 0.4071 -0.9436 31 1 -0.3633 -1.0207 0.1191 32 1 0.4624 0.1045 -2.4629 33 1 1.9953 1.0060 -2.5368 34 1 1.6450 -0.3166 -4.4949 35 1 3.9377 -1.2866 -2.1020 36 1 3.9457 0.2867 -1.2672 37 1 3.7121 -2.4539 0.0594 38 1 5.1438 -1.3959 0.0827 39 1 3.8405 0.3530 1.2531 40 1 3.8174 -1.1702 2.1735 41 1 0.3718 0.0608 2.2639 42 1 1.9296 0.8364 2.6381 43 1 1.4481 -1.0926 6.8445 44 1 2.2780 -2.2361 5.7619 45 1 1.0975 -4.3413 8.5432 46 1 -0.0225 0.8343 4.0903 47 1 -0.2376 0.4342 5.8113 48 1 2.0256 1.3216 6.3004 49 1 2.2407 1.7216 4.5794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412099618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:21 Heat of formation + Delta-G solvation = -56.162916 kcal Electronic energy + Delta-G solvation = -28503.043205 eV Core-core repulsion = 24658.213299 eV Total energy + Delta-G solvation = -3844.829906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09486 -38.78526 -36.97507 -36.69619 -35.18010 -33.65874 -32.89975 -32.76066 -30.82448 -28.69787 -27.59530 -26.33968 -25.57828 -24.00464 -23.02226 -21.53313 -21.32188 -19.76369 -18.47271 -17.75156 -17.52766 -16.62372 -16.41474 -15.79034 -15.59467 -15.31382 -15.10231 -14.69922 -14.52321 -14.33863 -14.22445 -13.81417 -13.69700 -13.33985 -13.22348 -12.79383 -12.56281 -12.43449 -12.41697 -12.23283 -12.10650 -12.05233 -11.85883 -11.76144 -11.30666 -11.24684 -11.00195 -10.99797 -10.84264 -10.73497 -10.59475 -10.40737 -10.22889 -10.16137 -10.00026 -9.68388 -8.95001 -8.44646 -8.15347 -7.78998 -6.06431 -4.10760 2.70854 2.78591 3.31644 3.33575 3.36912 3.42189 3.44531 3.81611 4.13535 4.28294 4.44704 4.57893 4.69325 4.83625 4.94916 4.99543 5.07615 5.12189 5.15324 5.17513 5.27817 5.28098 5.31070 5.33100 5.39887 5.47348 5.51084 5.58390 5.69705 5.74706 5.82249 5.82783 5.97101 5.99994 6.06762 6.10776 6.18035 6.31440 6.44434 6.88784 7.13117 7.18439 7.37822 7.39089 7.47256 7.55026 7.90037 8.20268 8.31057 8.88503 9.06349 9.54824 11.01622 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003638 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.488720 B = 7695.633268 C = 9128.309516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.091 3.909 3 H 0.039 0.961 4 C -0.079 4.079 5 H 0.089 0.911 6 C 0.079 3.921 7 O -0.571 6.571 8 C -0.110 4.110 9 C -0.115 4.115 10 C 0.057 3.943 11 N -0.512 5.512 12 C 0.028 3.972 13 C 0.508 3.492 14 O -0.511 6.511 15 N -0.601 5.601 16 C 0.247 3.753 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.119 3.881 26 C -0.051 4.051 27 C 0.217 3.783 28 N -0.446 5.446 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.377 0.623 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.055 0.945 43 H 0.033 0.967 44 H 0.046 0.954 45 H 0.264 0.736 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 11.341 -17.319 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.017 4.017 3 H 0.057 0.943 4 C -0.098 4.098 5 H 0.107 0.893 6 C 0.001 3.999 7 O -0.376 6.376 8 C -0.148 4.148 9 C -0.153 4.153 10 C -0.071 4.071 11 N -0.236 5.236 12 C -0.103 4.103 13 C 0.294 3.706 14 O -0.386 6.386 15 N -0.334 5.334 16 C 0.128 3.872 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.008 4.008 26 C -0.092 4.092 27 C -0.101 4.101 28 N -0.123 5.123 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.223 0.777 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.354 11.221 -16.559 20.141 hybrid contribution -0.674 0.293 -0.158 0.752 sum 1.680 11.514 -16.717 20.368 Atomic orbital electron populations 1.22096 0.94405 1.03423 1.01571 1.21486 0.95285 0.94921 0.90034 0.94335 1.21134 0.96286 1.01108 0.91273 0.89286 1.22315 0.98206 0.93851 0.85548 1.86494 1.82209 1.52698 1.16187 1.21571 0.94501 1.00371 0.98348 1.21563 0.99506 1.00848 0.93411 1.22183 0.86366 0.98083 1.00453 1.61463 1.07747 1.54395 1.00040 1.22215 1.01887 0.95735 0.90436 1.20193 0.79717 0.87479 0.83222 1.90681 1.41159 1.23987 1.82743 1.48230 1.56708 1.18061 1.10396 1.19304 0.98221 0.87572 0.82058 1.21387 1.05307 1.16071 1.13867 0.92434 1.24905 0.96341 0.97185 0.95505 1.69908 1.31530 1.34688 1.17238 0.86590 0.82620 0.80761 0.77651 1.20142 1.21241 1.20292 1.21271 0.93653 0.83002 1.02865 1.19919 0.98530 0.85105 1.05683 1.29121 0.93611 0.94492 0.92863 1.81206 1.09465 1.12281 1.09383 0.92284 0.91949 0.90970 0.93151 0.93989 0.77714 0.91256 0.92815 0.90658 0.91672 0.95754 0.88999 0.87862 0.92697 0.94881 0.93637 0.92659 0.90922 0.88769 0.86450 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 8.44 37.16 0.31 -1.20 16 2 C 0.09 0.98 1.96 -67.72 -0.13 0.84 16 3 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.08 -0.84 2.11 -90.54 -0.19 -1.03 16 5 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 6 C 0.08 0.66 6.24 37.16 0.23 0.89 16 7 O -0.57 -5.08 13.25 -35.23 -0.47 -5.55 16 8 C -0.11 -1.17 5.16 -26.60 -0.14 -1.31 16 9 C -0.12 -1.38 6.09 -26.64 -0.16 -1.55 16 10 C 0.06 0.75 5.11 -3.83 -0.02 0.73 16 11 N -0.51 -6.95 4.12 -228.12 -0.94 -7.89 16 12 C 0.03 0.37 3.82 -4.98 -0.02 0.35 16 13 C 0.51 9.27 7.36 -10.98 -0.08 9.19 16 14 O -0.51 -11.77 14.42 5.56 0.08 -11.69 16 15 N -0.60 -10.83 2.46 -175.06 -0.43 -11.26 16 16 C 0.25 5.81 5.16 -5.20 -0.03 5.79 16 17 C -0.53 -14.09 9.39 -34.44 -0.32 -14.41 16 18 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 21 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 26 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 27 C 0.22 2.57 15.43 -20.76 -0.32 2.25 16 28 N -0.45 -6.45 18.54 42.15 0.78 -5.66 16 29 H 0.06 0.53 6.39 -51.93 -0.33 0.20 16 30 H 0.06 0.48 6.03 -51.93 -0.31 0.17 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.37 6.07 -51.93 -0.32 0.05 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.38 1.59 9.12 45.56 0.42 2.00 16 35 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 1.45 6.34 -51.93 -0.33 1.12 16 41 H 0.10 1.23 4.79 -51.93 -0.25 0.98 16 42 H 0.06 0.59 7.10 -51.93 -0.37 0.22 16 43 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 44 H 0.05 1.23 7.42 -51.92 -0.39 0.84 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 47 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 48 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.10 0.87 7.22 -51.93 -0.38 0.50 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -33.88 390.22 -7.73 -41.61 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.18 Total: 0.08 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.16 Total: 3.01 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.15 Total: -49.66 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.39 Total: -17.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.88 -7.73 -41.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412099618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.551 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds