Wall clock time and date at job start Fri Apr 10 2020 18:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46250 * 2 1 4 4 C 1.53035 * 109.45532 * 240.02247 * 2 1 3 5 5 H 1.08995 * 109.50396 * 300.79244 * 4 2 1 6 6 C 1.53001 * 109.49894 * 60.87416 * 4 2 1 7 7 O 1.42904 * 109.46702 * 184.99948 * 6 4 2 8 8 C 1.53118 * 109.27904 * 180.80865 * 4 2 1 9 9 C 1.53129 * 109.15827 * 57.65842 * 8 4 2 10 10 C 1.53039 * 109.27819 * 302.34346 * 9 8 4 11 11 N 1.46848 * 109.52320 * 59.17940 * 10 9 8 12 12 C 1.46892 * 111.00261 * 174.16209 * 11 10 9 13 13 C 1.50707 * 109.46775 * 288.16724 * 12 11 10 14 14 O 1.21280 * 120.00093 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99839 * 180.02562 * 13 12 11 16 16 C 1.46492 * 119.99853 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47259 * 269.99616 * 16 15 13 18 18 H 1.07996 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00144 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46947 * 60.00406 * 21 19 17 23 23 H 1.48502 * 109.46971 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46952 * 300.00358 * 21 19 17 25 25 C 1.46498 * 119.99875 * 359.97438 * 15 13 12 26 26 C 1.53001 * 109.47435 * 270.00213 * 25 15 13 27 27 C 1.47193 * 109.47314 * 180.02562 * 26 25 15 28 28 N 7.05820 * 79.89584 * 55.97842 * 2 1 3 29 29 H 1.09001 * 109.47422 * 306.65904 * 1 2 3 30 30 H 1.08998 * 109.46649 * 66.66183 * 1 2 3 31 31 H 1.08998 * 109.47037 * 186.65642 * 1 2 3 32 32 H 1.08998 * 109.47131 * 304.99343 * 6 4 2 33 33 H 1.08990 * 109.47459 * 65.00006 * 6 4 2 34 34 H 0.96698 * 113.99747 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.52816 * 177.55895 * 8 4 2 36 36 H 1.08997 * 109.52629 * 297.76024 * 8 4 2 37 37 H 1.08993 * 109.50162 * 62.28367 * 9 8 4 38 38 H 1.09003 * 109.50138 * 182.36525 * 9 8 4 39 39 H 1.09007 * 109.46252 * 299.16802 * 10 9 8 40 40 H 1.08992 * 109.46499 * 179.19540 * 10 9 8 41 41 H 1.09005 * 109.47635 * 168.17014 * 12 11 10 42 42 H 1.09000 * 109.47221 * 48.16304 * 12 11 10 43 43 H 1.09003 * 109.47392 * 149.99547 * 16 15 13 44 44 H 1.09008 * 109.47285 * 29.99929 * 16 15 13 45 45 H 0.97011 * 120.00223 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.47447 * 30.00347 * 25 15 13 47 47 H 1.09001 * 109.47180 * 150.00246 * 25 15 13 48 48 H 1.09003 * 109.46912 * 300.00461 * 26 25 15 49 49 H 1.09001 * 109.46910 * 59.99867 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7210 -1.2499 5 1 1.6650 -1.7445 -1.2579 6 6 1.5479 0.0129 -2.4991 7 8 1.9252 -0.7240 -3.6639 8 6 3.5708 -0.7363 -1.2357 9 6 4.0546 -1.4192 0.0467 10 6 3.4865 -0.6780 1.2591 11 7 2.0193 -0.6918 1.1995 12 6 1.4374 -0.1106 2.4165 13 6 1.6333 -1.0605 3.5700 14 8 2.2012 -2.1177 3.3952 15 7 1.1764 -0.7355 4.7957 16 6 1.3662 -1.6591 5.9168 17 6 0.1880 -2.5947 6.0020 18 1 -0.6212 -2.5101 5.2917 19 6 0.1435 -3.5594 6.9860 20 7 1.1290 -3.6628 7.8506 21 14 -1.3174 -4.7188 7.0920 22 1 -1.4299 -5.4902 5.8281 23 1 -1.1248 -5.6551 8.2284 24 1 -2.5591 -3.9323 7.3041 25 6 0.4899 0.5414 5.0067 26 6 1.5132 1.6144 5.3840 27 6 0.8233 2.8972 5.5966 28 7 0.2917 3.8878 5.7593 29 1 -0.3634 0.6136 0.8244 30 1 -0.3632 0.4071 -0.9436 31 1 -0.3633 -1.0207 0.1191 32 1 0.4624 0.1045 -2.4629 33 1 1.9953 1.0060 -2.5368 34 1 1.6450 -0.3166 -4.4949 35 1 3.9377 -1.2866 -2.1020 36 1 3.9457 0.2867 -1.2672 37 1 3.7121 -2.4539 0.0594 38 1 5.1438 -1.3959 0.0827 39 1 3.8405 0.3530 1.2531 40 1 3.8174 -1.1702 2.1735 41 1 0.3718 0.0608 2.2639 42 1 1.9296 0.8364 2.6381 43 1 1.4481 -1.0926 6.8445 44 1 2.2780 -2.2361 5.7619 45 1 1.0975 -4.3413 8.5432 46 1 -0.0225 0.8343 4.0903 47 1 -0.2376 0.4342 5.8113 48 1 2.0256 1.3216 6.3004 49 1 2.2407 1.7216 4.5794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412099618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:20 Heat of formation + Delta-G solvation = -80.966740 kcal Electronic energy + Delta-G solvation = -28504.118779 eV Core-core repulsion = 24658.213299 eV Total energy + Delta-G solvation = -3845.905480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19874 -39.95750 -37.98062 -37.51537 -36.58254 -34.93654 -34.44488 -33.70557 -32.12258 -30.04699 -28.67120 -27.66471 -26.42343 -25.27880 -24.57947 -22.60774 -22.21590 -20.61503 -19.82642 -18.80117 -18.38281 -18.29079 -17.77320 -17.10785 -16.62432 -16.45976 -16.04369 -15.96238 -15.64819 -15.55939 -15.23222 -14.98421 -14.66330 -14.44506 -14.17467 -14.13710 -13.86609 -13.54404 -13.49132 -13.36147 -13.16217 -13.12327 -12.94079 -12.85879 -12.75307 -12.68999 -12.49354 -12.25455 -12.12936 -11.86772 -11.83749 -11.65423 -11.62435 -11.22567 -11.09100 -10.66042 -10.56449 -10.40391 -9.42024 -9.09642 -8.15792 -6.27750 1.40372 1.43780 1.50172 1.70892 1.84746 1.97995 2.25416 2.44920 2.87638 3.14797 3.20216 3.47803 3.78234 3.81757 3.92878 4.02901 4.06875 4.13971 4.23957 4.33659 4.36280 4.37571 4.51611 4.52741 4.56687 4.59190 4.61157 4.76335 4.85521 4.88367 4.93647 5.02855 5.05458 5.07311 5.11705 5.16008 5.24873 5.34687 5.37173 5.42930 5.54416 5.64908 5.91838 6.12245 6.16677 6.28779 6.61296 6.80590 6.88393 6.99771 7.38338 7.64211 8.90472 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003638 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.488720 B = 7695.633268 C = 9128.309516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.094 3.906 3 H 0.062 0.938 4 C -0.081 4.081 5 H 0.056 0.944 6 C 0.083 3.917 7 O -0.594 6.594 8 C -0.103 4.103 9 C -0.114 4.114 10 C 0.061 3.939 11 N -0.541 5.541 12 C 0.041 3.959 13 C 0.502 3.498 14 O -0.571 6.571 15 N -0.601 5.601 16 C 0.263 3.737 17 C -0.539 4.539 18 H 0.052 0.948 19 C 0.011 3.989 20 N -0.927 5.927 21 Si 0.956 3.044 22 H -0.281 1.281 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.114 3.886 26 C -0.038 4.038 27 C 0.246 3.754 28 N -0.488 5.488 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.396 0.604 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.033 0.967 44 H 0.001 0.999 45 H 0.265 0.735 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.119 0.881 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 13.963 -19.026 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.100 4.100 5 H 0.074 0.926 6 C 0.006 3.994 7 O -0.402 6.402 8 C -0.140 4.140 9 C -0.152 4.152 10 C -0.067 4.067 11 N -0.266 5.266 12 C -0.089 4.089 13 C 0.290 3.710 14 O -0.449 6.449 15 N -0.333 5.333 16 C 0.142 3.858 17 C -0.577 4.577 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.567 5.567 21 Si 0.781 3.219 22 H -0.207 1.207 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.011 4.011 26 C -0.079 4.079 27 C -0.071 4.071 28 N -0.166 5.166 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.110 0.890 43 H 0.051 0.949 44 H 0.019 0.981 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.101 0.899 48 H 0.137 0.863 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.294 13.903 -18.290 23.011 hybrid contribution -0.317 -0.570 0.335 0.733 sum 0.976 13.333 -17.956 22.386 Atomic orbital electron populations 1.22109 0.93581 1.02311 1.03386 1.21545 0.95886 0.95511 0.88390 0.92010 1.21129 0.96135 0.99822 0.92941 0.92570 1.22267 0.98952 0.93948 0.84274 1.86446 1.82607 1.53722 1.17431 1.21503 0.94687 1.00963 0.96857 1.21534 1.00175 0.99212 0.94269 1.22065 0.86584 0.98978 0.99057 1.61354 1.07941 1.56169 1.01168 1.22152 1.03452 0.95193 0.88151 1.21193 0.78154 0.87556 0.84108 1.90660 1.43678 1.26876 1.83682 1.48102 1.57054 1.18980 1.09201 1.18732 0.95186 0.87918 0.83977 1.21742 1.05919 1.16723 1.13361 0.92940 1.25709 0.98860 0.98819 0.95408 1.70016 1.33236 1.35499 1.17911 0.85646 0.80098 0.78869 0.77269 1.20708 1.20753 1.18671 1.21498 0.93971 0.81311 1.04280 1.19827 0.97893 0.83243 1.06910 1.29119 0.92469 0.94045 0.91483 1.81252 1.10696 1.13728 1.10926 0.91093 0.89630 0.93429 0.91942 0.92031 0.75400 0.91915 0.90923 0.93772 0.90567 0.93307 0.92524 0.85930 0.88954 0.94909 0.98078 0.92638 0.87661 0.89889 0.86301 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.44 71.98 0.61 -1.94 16 2 C 0.09 1.75 1.96 44.94 0.09 1.84 16 3 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.08 -1.59 2.11 -10.74 -0.02 -1.62 16 5 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 6 C 0.08 1.15 6.24 71.98 0.45 1.60 16 7 O -0.59 -9.33 13.25 -148.98 -1.97 -11.30 16 8 C -0.10 -2.02 5.16 30.68 0.16 -1.87 16 9 C -0.11 -2.74 6.09 30.65 0.19 -2.56 16 10 C 0.06 1.55 5.11 86.33 0.44 2.00 16 11 N -0.54 -13.95 4.12 -875.63 -3.61 -17.56 16 12 C 0.04 0.98 3.82 85.56 0.33 1.30 16 13 C 0.50 18.24 7.36 87.66 0.65 18.89 16 14 O -0.57 -27.51 14.42 -3.03 -0.04 -27.55 16 15 N -0.60 -21.48 2.46 -826.14 -2.03 -23.51 16 16 C 0.26 12.77 5.16 85.63 0.44 13.21 16 17 C -0.54 -29.39 9.39 25.60 0.24 -29.14 16 18 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 19 C 0.01 0.62 5.46 84.66 0.46 1.08 16 20 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 21 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.11 2.72 5.17 86.38 0.45 3.17 16 26 C -0.04 -0.66 6.03 28.79 0.17 -0.48 16 27 C 0.25 5.13 15.43 89.44 1.38 6.51 16 28 N -0.49 -13.05 18.54 20.00 0.37 -12.68 16 29 H 0.07 0.97 6.39 -2.39 -0.02 0.96 16 30 H 0.09 0.99 6.03 -2.39 -0.01 0.97 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.70 6.07 -2.39 -0.01 0.69 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.40 2.36 9.12 -74.06 -0.68 1.68 16 35 H 0.06 1.32 7.90 -2.39 -0.02 1.30 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.06 1.85 6.34 -2.39 -0.02 1.84 16 41 H 0.12 2.47 4.79 -2.38 -0.01 2.46 16 42 H 0.09 1.54 7.10 -2.39 -0.02 1.52 16 43 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 44 H 0.00 0.06 7.42 -2.38 -0.02 0.05 16 45 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 46 H 0.11 1.85 6.44 -2.39 -0.02 1.84 16 47 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 48 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.13 1.64 7.22 -2.39 -0.02 1.62 16 Total: -1.00 -78.36 390.22 1.33 -77.02 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.28 Total: 11.38 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.02 Total: 11.98 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -4.98 Total: -107.76 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -2.02 Total: -38.85 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -78.36 1.33 -77.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412099618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.944 kcal (2) G-P(sol) polarization free energy of solvation -78.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds