Wall clock time and date at job start Fri Apr 10 2020 18:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.52748 * 2 1 4 4 C 1.53039 * 109.49418 * 120.08165 * 2 1 3 5 5 C 1.53045 * 109.52591 * 181.32225 * 4 2 1 6 6 C 1.53197 * 109.31144 * 298.61547 * 5 4 2 7 7 N 1.46927 * 108.76356 * 54.65274 * 6 5 4 8 8 C 1.34779 * 120.62545 * 126.36546 * 7 6 5 9 9 O 1.21352 * 119.99560 * 175.71270 * 8 7 6 10 10 C 1.49448 * 120.00301 * 355.71414 * 8 7 6 11 11 O 1.21345 * 119.99907 * 5.92935 * 10 8 7 12 12 N 1.34779 * 119.99976 * 185.93718 * 10 8 7 13 13 C 1.46496 * 120.00092 * 185.02566 * 12 10 8 14 14 C 1.52996 * 109.47475 * 184.98855 * 13 12 10 15 15 C 1.50696 * 115.55057 * 65.06422 * 14 13 12 16 16 H 1.08004 * 120.00057 * 274.26525 * 15 14 13 17 17 C 1.37879 * 120.00052 * 94.26792 * 15 14 13 18 18 N 1.31516 * 119.99813 * 4.77866 * 17 15 14 19 19 Si 1.86797 * 120.00245 * 184.78040 * 17 15 14 20 20 H 1.48503 * 109.46879 * 89.99518 * 19 17 15 21 21 H 1.48495 * 109.47375 * 209.99935 * 19 17 15 22 22 H 1.48497 * 109.46990 * 330.00073 * 19 17 15 23 23 C 1.53006 * 117.49772 * 279.40049 * 14 13 12 24 24 C 1.53000 * 117.50027 * 210.74229 * 14 13 12 25 25 C 1.46924 * 118.74213 * 306.38503 * 7 6 5 26 26 H 1.09004 * 109.70147 * 293.75041 * 25 7 6 27 27 C 1.52999 * 109.58867 * 173.39976 * 25 7 6 28 28 N 1.46902 * 109.47216 * 178.45464 * 27 25 7 29 29 H 1.09004 * 109.47088 * 291.49681 * 1 2 3 30 30 H 1.09004 * 109.46842 * 51.49003 * 1 2 3 31 31 H 1.08993 * 109.47692 * 171.49101 * 1 2 3 32 32 H 1.09001 * 109.46363 * 301.33127 * 4 2 1 33 33 H 1.08997 * 109.46517 * 61.31120 * 4 2 1 34 34 H 1.09002 * 109.49945 * 58.57705 * 5 4 2 35 35 H 1.08997 * 109.50335 * 178.67885 * 5 4 2 36 36 H 1.08998 * 109.59741 * 294.86866 * 6 5 4 37 37 H 1.09000 * 109.70271 * 174.50653 * 6 5 4 38 38 H 0.97000 * 119.99998 * 5.02141 * 12 10 8 39 39 H 1.08999 * 109.47169 * 304.98684 * 13 12 10 40 40 H 1.09003 * 109.47634 * 64.98560 * 13 12 10 41 41 H 0.96992 * 120.00029 * 185.00331 * 18 17 15 42 42 H 1.09000 * 117.49524 * 359.97438 * 23 14 13 43 43 H 1.08999 * 117.50195 * 145.02002 * 23 14 13 44 44 H 1.09000 * 117.49719 * 214.98082 * 24 14 13 45 45 H 1.08997 * 117.49789 * 359.97438 * 24 14 13 46 46 H 1.09003 * 109.46548 * 298.45430 * 27 25 7 47 47 H 1.08997 * 109.47044 * 58.45193 * 27 25 7 48 48 H 1.00894 * 110.99651 * 184.70006 * 28 27 25 49 49 H 1.00899 * 110.99628 * 308.66117 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7231 1.2484 5 6 3.5708 -0.6948 1.2659 6 6 4.1052 -1.4268 0.0308 7 7 3.5045 -0.8292 -1.1695 8 6 4.2811 -0.3857 -2.1779 9 8 3.7720 0.0342 -3.1962 10 6 5.7692 -0.4112 -2.0418 11 8 6.2809 -0.9289 -1.0710 12 7 6.5428 0.1410 -2.9974 13 6 8.0007 0.0200 -2.9202 14 6 8.6404 0.8328 -4.0476 15 6 8.4348 2.3237 -3.9714 16 1 7.5429 2.7679 -4.3882 17 6 9.3854 3.1208 -3.3697 18 7 10.5134 2.5935 -2.9463 19 14 9.0711 4.9497 -3.1557 20 1 8.4040 5.1879 -1.8505 21 1 10.3626 5.6816 -3.1924 22 1 8.1966 5.4335 -4.2540 23 6 8.6879 0.1964 -5.4382 24 6 9.9704 0.3310 -4.6135 25 6 2.0413 -0.7238 -1.2496 26 1 1.6032 -1.7207 -1.2994 27 6 1.6517 0.0705 -2.4979 28 7 0.1877 0.1427 -2.5953 29 1 -0.3633 0.3766 0.9562 30 1 -0.3633 0.6399 -0.8042 31 1 -0.3634 -1.0162 -0.1520 32 1 1.6581 -0.2245 2.1389 33 1 1.6969 -1.7573 1.2352 34 1 3.9157 0.3391 1.2538 35 1 3.9336 -1.1893 2.1669 36 1 3.8374 -2.4819 0.0867 37 1 5.1897 -1.3270 -0.0149 38 1 6.1342 0.6185 -3.7363 39 1 8.3463 0.3985 -1.9583 40 1 8.2843 -1.0276 -3.0215 41 1 11.1506 3.1385 -2.4587 42 1 8.2637 -0.8015 -5.5497 43 1 8.5709 0.8561 -6.2979 44 1 10.6966 1.0793 -4.9309 45 1 10.3899 -0.5780 -4.1823 46 1 2.0615 1.0782 -2.4298 47 1 2.0507 -0.4250 -3.3829 48 1 -0.0958 0.5958 -3.4510 49 1 -0.2255 -0.7746 -2.5176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418819389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:26 Heat of formation + Delta-G solvation = -13.109062 kcal Electronic energy + Delta-G solvation = -28893.790794 eV Core-core repulsion = 25050.827843 eV Total energy + Delta-G solvation = -3842.962951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07525 -39.02434 -37.68235 -36.86927 -35.07746 -33.92910 -33.06859 -31.95073 -31.12857 -28.19102 -26.95220 -25.85241 -25.30480 -23.69622 -22.56602 -21.60874 -21.15092 -20.33445 -19.82822 -19.13999 -17.30759 -16.80678 -16.11671 -15.90038 -15.80855 -15.36088 -15.23533 -14.86574 -14.76418 -14.47957 -14.36680 -13.87695 -13.57896 -13.26334 -13.16597 -13.02237 -12.77446 -12.68178 -12.24554 -12.01347 -11.97332 -11.74787 -11.56885 -11.15371 -11.06771 -11.03792 -10.92302 -10.89109 -10.56290 -10.55532 -10.23166 -10.19806 -9.56994 -9.19681 -8.89446 -8.69633 -8.55561 -8.43713 -8.26655 -8.11864 -6.11648 -4.21315 1.67895 2.52206 3.25337 3.32905 3.35387 3.48605 3.74961 4.33681 4.45745 4.58628 4.69082 4.79413 4.82086 4.97371 5.13659 5.15319 5.17241 5.33757 5.38476 5.52402 5.64513 5.69098 5.74231 5.83986 5.89896 5.92271 5.98116 6.05454 6.10202 6.15440 6.25338 6.33671 6.33848 6.42921 6.49221 6.56628 6.65516 6.73751 6.95235 7.06432 7.10330 7.19516 7.29484 7.31111 7.56005 7.72786 7.77704 8.08292 8.28525 8.44714 8.80980 9.46323 10.94909 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003330 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.809619 B = 8407.263193 C = 8571.517038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.119 4.119 5 C -0.133 4.133 6 C 0.043 3.957 7 N -0.578 5.578 8 C 0.509 3.491 9 O -0.521 6.521 10 C 0.498 3.502 11 O -0.527 6.527 12 N -0.661 5.661 13 C 0.157 3.843 14 C 0.014 3.986 15 C -0.498 4.498 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.213 4.213 24 C -0.130 4.130 25 C 0.148 3.852 26 H 0.069 0.931 27 C 0.057 3.943 28 N -0.848 5.848 29 H 0.040 0.960 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.168 0.832 38 H 0.414 0.586 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.261 0.739 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.340 0.660 49 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.671 -8.223 4.906 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.171 4.171 6 C -0.077 4.077 7 N -0.311 5.311 8 C 0.292 3.708 9 O -0.397 6.397 10 C 0.278 3.722 11 O -0.408 6.408 12 N -0.309 5.309 13 C 0.035 3.965 14 C 0.014 3.986 15 C -0.536 4.536 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.512 5.512 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.251 4.251 24 C -0.168 4.168 25 C 0.044 3.956 26 H 0.087 0.913 27 C -0.072 4.072 28 N -0.379 5.379 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.184 0.816 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.153 0.847 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.248 -7.853 5.683 18.920 hybrid contribution -0.224 0.530 -0.690 0.898 sum -16.472 -7.324 4.993 18.705 Atomic orbital electron populations 1.22176 0.93624 1.02605 1.02850 1.21420 0.96935 0.99488 0.93209 0.91071 1.21700 0.95685 1.00509 0.97814 1.21904 0.95512 1.01629 0.98102 1.23481 1.06276 0.95721 0.82252 1.48023 1.05836 1.58855 1.18382 1.20372 0.88344 0.78463 0.83580 1.90730 1.73712 1.46117 1.29160 1.20078 0.87603 0.80657 0.83822 1.90178 1.73969 1.47154 1.29457 1.45896 1.08457 1.51468 1.25089 1.21303 0.76025 0.97607 1.01608 1.19051 0.97483 0.94012 0.88092 1.20364 1.05122 0.88825 1.39240 0.92145 1.24970 0.94327 0.98416 0.95274 1.70005 1.07835 1.36663 1.36671 0.86641 0.77660 0.85348 0.78725 1.20575 1.21181 1.19767 1.23097 1.05037 0.99756 0.97171 1.22456 0.91245 1.00395 1.02733 1.21466 0.78915 0.98917 0.96254 0.91278 1.22578 0.86597 1.01440 0.96573 1.59148 1.09752 1.25869 1.43173 0.94069 0.87522 0.93875 0.91913 0.92198 0.91571 0.90799 0.92152 0.81639 0.75003 0.90579 0.93596 0.92860 0.91790 0.90228 0.88663 0.91910 0.90223 0.91163 0.84701 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.03 37.16 0.30 -1.12 16 2 C -0.09 -0.97 2.34 -90.50 -0.21 -1.18 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.12 -1.17 5.16 -26.69 -0.14 -1.31 16 5 C -0.13 -1.46 6.08 -26.61 -0.16 -1.63 16 6 C 0.04 0.54 6.28 -3.71 -0.02 0.52 16 7 N -0.58 -7.87 2.97 -165.72 -0.49 -8.37 16 8 C 0.51 8.20 7.63 -11.59 -0.09 8.11 16 9 O -0.52 -8.80 12.03 5.50 0.07 -8.74 16 10 C 0.50 8.93 7.81 -11.59 -0.09 8.84 16 11 O -0.53 -9.91 12.99 5.50 0.07 -9.84 16 12 N -0.66 -12.58 5.44 -60.74 -0.33 -12.91 16 13 C 0.16 3.32 5.53 -4.05 -0.02 3.30 16 14 C 0.01 0.33 1.62 -155.66 -0.25 0.08 16 15 C -0.50 -12.74 8.76 -34.44 -0.30 -13.04 16 16 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 17 C 0.07 1.94 5.41 -17.82 -0.10 1.85 16 18 N -0.88 -23.72 11.83 55.43 0.66 -23.06 16 19 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 24 C -0.13 -2.92 8.84 -26.69 -0.24 -3.16 16 25 C 0.15 1.71 2.68 -67.60 -0.18 1.53 16 26 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 27 C 0.06 0.69 4.65 -3.82 -0.02 0.67 16 28 N -0.85 -7.53 6.17 -10.37 -0.06 -7.60 16 29 H 0.04 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.11 1.04 5.57 -51.93 -0.29 0.75 16 31 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.17 2.50 3.70 -57.20 -0.21 2.28 16 38 H 0.41 7.79 7.96 -40.82 -0.32 7.46 16 39 H 0.08 1.79 8.10 -51.93 -0.42 1.37 16 40 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 41 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 44 H 0.09 2.34 7.57 -51.93 -0.39 1.95 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.08 1.15 7.43 -51.93 -0.39 0.77 16 47 H 0.07 0.97 6.00 -52.02 -0.31 0.66 16 48 H 0.34 2.71 9.08 -39.29 -0.36 2.35 16 49 H 0.33 2.49 8.63 -39.29 -0.34 2.15 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -26.73 378.97 -9.26 -36.00 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -8.07 Total: 14.44 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.79 Total: -1.19 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.23 Total: -51.94 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.14 Total: -18.58 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.73 -9.26 -36.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418819389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.887 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds