Wall clock time and date at job start Fri Apr 10 2020 18:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.52748 * 2 1 4 4 C 1.53039 * 109.49418 * 120.08165 * 2 1 3 5 5 C 1.53045 * 109.52591 * 181.32225 * 4 2 1 6 6 C 1.53197 * 109.31144 * 298.61547 * 5 4 2 7 7 N 1.46927 * 108.76356 * 54.65274 * 6 5 4 8 8 C 1.34779 * 120.62545 * 126.36546 * 7 6 5 9 9 O 1.21352 * 119.99560 * 175.71270 * 8 7 6 10 10 C 1.49448 * 120.00301 * 355.71414 * 8 7 6 11 11 O 1.21345 * 119.99907 * 5.92935 * 10 8 7 12 12 N 1.34779 * 119.99976 * 185.93718 * 10 8 7 13 13 C 1.46496 * 120.00092 * 185.02566 * 12 10 8 14 14 C 1.52996 * 109.47475 * 184.98855 * 13 12 10 15 15 C 1.50696 * 115.55057 * 65.06422 * 14 13 12 16 16 H 1.08004 * 120.00057 * 274.26525 * 15 14 13 17 17 C 1.37879 * 120.00052 * 94.26792 * 15 14 13 18 18 N 1.31516 * 119.99813 * 4.77866 * 17 15 14 19 19 Si 1.86797 * 120.00245 * 184.78040 * 17 15 14 20 20 H 1.48503 * 109.46879 * 89.99518 * 19 17 15 21 21 H 1.48495 * 109.47375 * 209.99935 * 19 17 15 22 22 H 1.48497 * 109.46990 * 330.00073 * 19 17 15 23 23 C 1.53006 * 117.49772 * 279.40049 * 14 13 12 24 24 C 1.53000 * 117.50027 * 210.74229 * 14 13 12 25 25 C 1.46924 * 118.74213 * 306.38503 * 7 6 5 26 26 H 1.09004 * 109.70147 * 293.75041 * 25 7 6 27 27 C 1.52999 * 109.58867 * 173.39976 * 25 7 6 28 28 N 1.46902 * 109.47216 * 178.45464 * 27 25 7 29 29 H 1.09004 * 109.47088 * 291.49681 * 1 2 3 30 30 H 1.09004 * 109.46842 * 51.49003 * 1 2 3 31 31 H 1.08993 * 109.47692 * 171.49101 * 1 2 3 32 32 H 1.09001 * 109.46363 * 301.33127 * 4 2 1 33 33 H 1.08997 * 109.46517 * 61.31120 * 4 2 1 34 34 H 1.09002 * 109.49945 * 58.57705 * 5 4 2 35 35 H 1.08997 * 109.50335 * 178.67885 * 5 4 2 36 36 H 1.08998 * 109.59741 * 294.86866 * 6 5 4 37 37 H 1.09000 * 109.70271 * 174.50653 * 6 5 4 38 38 H 0.97000 * 119.99998 * 5.02141 * 12 10 8 39 39 H 1.08999 * 109.47169 * 304.98684 * 13 12 10 40 40 H 1.09003 * 109.47634 * 64.98560 * 13 12 10 41 41 H 0.96992 * 120.00029 * 185.00331 * 18 17 15 42 42 H 1.09000 * 117.49524 * 359.97438 * 23 14 13 43 43 H 1.08999 * 117.50195 * 145.02002 * 23 14 13 44 44 H 1.09000 * 117.49719 * 214.98082 * 24 14 13 45 45 H 1.08997 * 117.49789 * 359.97438 * 24 14 13 46 46 H 1.09003 * 109.46548 * 298.45430 * 27 25 7 47 47 H 1.08997 * 109.47044 * 58.45193 * 27 25 7 48 48 H 1.00894 * 110.99651 * 184.70006 * 28 27 25 49 49 H 1.00899 * 110.99628 * 308.66117 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7231 1.2484 5 6 3.5708 -0.6948 1.2659 6 6 4.1052 -1.4268 0.0308 7 7 3.5045 -0.8292 -1.1695 8 6 4.2811 -0.3857 -2.1779 9 8 3.7720 0.0342 -3.1962 10 6 5.7692 -0.4112 -2.0418 11 8 6.2809 -0.9289 -1.0710 12 7 6.5428 0.1410 -2.9974 13 6 8.0007 0.0200 -2.9202 14 6 8.6404 0.8328 -4.0476 15 6 8.4348 2.3237 -3.9714 16 1 7.5429 2.7679 -4.3882 17 6 9.3854 3.1208 -3.3697 18 7 10.5134 2.5935 -2.9463 19 14 9.0711 4.9497 -3.1557 20 1 8.4040 5.1879 -1.8505 21 1 10.3626 5.6816 -3.1924 22 1 8.1966 5.4335 -4.2540 23 6 8.6879 0.1964 -5.4382 24 6 9.9704 0.3310 -4.6135 25 6 2.0413 -0.7238 -1.2496 26 1 1.6032 -1.7207 -1.2994 27 6 1.6517 0.0705 -2.4979 28 7 0.1877 0.1427 -2.5953 29 1 -0.3633 0.3766 0.9562 30 1 -0.3633 0.6399 -0.8042 31 1 -0.3634 -1.0162 -0.1520 32 1 1.6581 -0.2245 2.1389 33 1 1.6969 -1.7573 1.2352 34 1 3.9157 0.3391 1.2538 35 1 3.9336 -1.1893 2.1669 36 1 3.8374 -2.4819 0.0867 37 1 5.1897 -1.3270 -0.0149 38 1 6.1342 0.6185 -3.7363 39 1 8.3463 0.3985 -1.9583 40 1 8.2843 -1.0276 -3.0215 41 1 11.1506 3.1385 -2.4587 42 1 8.2637 -0.8015 -5.5497 43 1 8.5709 0.8561 -6.2979 44 1 10.6966 1.0793 -4.9309 45 1 10.3899 -0.5780 -4.1823 46 1 2.0615 1.0782 -2.4298 47 1 2.0507 -0.4250 -3.3829 48 1 -0.0958 0.5958 -3.4510 49 1 -0.2255 -0.7746 -2.5176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418819389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:25 Heat of formation + Delta-G solvation = -30.390850 kcal Electronic energy + Delta-G solvation = -28894.540188 eV Core-core repulsion = 25050.827843 eV Total energy + Delta-G solvation = -3843.712345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.28795 -40.34671 -38.84253 -38.57603 -36.07549 -35.26021 -34.25197 -33.90702 -32.00625 -29.35048 -28.33267 -27.40246 -26.69443 -24.78020 -23.73853 -22.89193 -22.53193 -21.56488 -21.24413 -20.60552 -18.69356 -18.12094 -17.73511 -17.11141 -17.00719 -16.68545 -16.55804 -16.15517 -15.99662 -15.82247 -15.62598 -15.29983 -14.65741 -14.56587 -14.44381 -14.30481 -13.93716 -13.77487 -13.58223 -13.41934 -13.23556 -12.96289 -12.87741 -12.82621 -12.57345 -12.40373 -12.10566 -11.98667 -11.96627 -11.79478 -11.46546 -11.38286 -11.21026 -11.05055 -10.41081 -10.23094 -10.12181 -9.88417 -9.73117 -9.09207 -8.12115 -6.25353 0.33159 1.27828 1.39115 1.42400 1.49727 2.12576 2.39856 2.47449 3.14351 3.26167 3.56167 3.61125 3.70635 3.93035 3.95318 4.06888 4.20184 4.23047 4.28312 4.45868 4.51539 4.60995 4.61573 4.66307 4.77350 4.82281 4.86014 4.92497 4.97986 4.98294 5.03503 5.05682 5.13392 5.26394 5.31637 5.31905 5.40236 5.51923 5.55965 5.65190 5.72912 5.78140 5.83863 5.98827 6.20590 6.30708 6.34996 6.63305 6.76785 6.81417 7.00145 7.43796 8.93780 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003330 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.809619 B = 8407.263193 C = 8571.517038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.047 0.953 4 C -0.114 4.114 5 C -0.130 4.130 6 C 0.041 3.959 7 N -0.570 5.570 8 C 0.508 3.492 9 O -0.533 6.533 10 C 0.496 3.504 11 O -0.537 6.537 12 N -0.665 5.665 13 C 0.173 3.827 14 C -0.007 4.007 15 C -0.506 4.506 16 H 0.054 0.946 17 C 0.030 3.970 18 N -0.901 5.901 19 Si 0.942 3.058 20 H -0.282 1.282 21 H -0.285 1.285 22 H -0.269 1.269 23 C -0.185 4.185 24 C -0.137 4.137 25 C 0.146 3.854 26 H 0.089 0.911 27 C 0.070 3.930 28 N -0.838 5.838 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.414 0.586 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.260 0.740 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.347 0.653 49 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.057 -9.389 5.475 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.066 0.934 4 C -0.152 4.152 5 C -0.168 4.168 6 C -0.079 4.079 7 N -0.303 5.303 8 C 0.290 3.710 9 O -0.411 6.411 10 C 0.278 3.722 11 O -0.418 6.418 12 N -0.314 5.314 13 C 0.050 3.950 14 C -0.008 4.008 15 C -0.544 4.544 16 H 0.073 0.927 17 C -0.171 4.171 18 N -0.539 5.539 19 Si 0.768 3.232 20 H -0.208 1.208 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.222 4.222 24 C -0.175 4.175 25 C 0.044 3.956 26 H 0.107 0.893 27 C -0.061 4.061 28 N -0.371 5.371 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.161 0.839 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.161 0.839 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.673 -9.032 6.267 21.669 hybrid contribution 0.464 0.861 -0.839 1.289 sum -18.209 -8.171 5.427 20.683 Atomic orbital electron populations 1.22098 0.92025 1.03398 1.02993 1.21393 0.98123 0.98092 0.93131 0.93449 1.21680 0.94399 1.01436 0.97645 1.21886 0.96657 1.00367 0.97929 1.23433 1.04942 0.97082 0.82467 1.48125 1.06731 1.57574 1.17841 1.20038 0.87441 0.79231 0.84246 1.90747 1.73509 1.47030 1.29789 1.20505 0.88651 0.79907 0.83169 1.90228 1.74770 1.47230 1.29608 1.45803 1.07657 1.52240 1.25677 1.20911 0.77221 0.97643 0.99235 1.19095 0.98370 0.93242 0.90079 1.20636 1.04613 0.90558 1.38609 0.92732 1.25590 0.94358 1.01707 0.95464 1.70100 1.08460 1.37707 1.37608 0.85804 0.77414 0.81522 0.78424 1.20788 1.21040 1.19322 1.23066 1.02878 1.00693 0.95609 1.22352 0.91105 1.00242 1.03802 1.21669 0.77387 1.00001 0.96592 0.89273 1.22237 0.88275 0.99481 0.96069 1.59076 1.07590 1.26765 1.43676 0.93466 0.88157 0.92418 0.90795 0.90566 0.93550 0.88981 0.90045 0.83930 0.74942 0.93759 0.92368 0.93085 0.89118 0.90339 0.91312 0.90605 0.93142 0.93058 0.83935 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.03 71.98 0.58 -1.69 16 2 C -0.09 -1.70 2.34 -10.72 -0.03 -1.73 16 3 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.11 -1.91 5.16 30.62 0.16 -1.75 16 5 C -0.13 -2.63 6.08 30.68 0.19 -2.45 16 6 C 0.04 0.98 6.28 86.36 0.54 1.52 16 7 N -0.57 -15.00 2.97 -796.59 -2.37 -17.36 16 8 C 0.51 16.34 7.63 87.27 0.67 17.01 16 9 O -0.53 -18.12 12.03 -3.25 -0.04 -18.16 16 10 C 0.50 17.96 7.81 87.27 0.68 18.64 16 11 O -0.54 -20.44 12.99 -3.23 -0.04 -20.48 16 12 N -0.67 -25.58 5.44 -464.43 -2.53 -28.11 16 13 C 0.17 7.40 5.53 86.38 0.48 7.88 16 14 C -0.01 -0.33 1.62 -52.93 -0.09 -0.41 16 15 C -0.51 -26.25 8.76 25.60 0.22 -26.03 16 16 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 17 C 0.03 1.59 5.41 84.65 0.46 2.04 16 18 N -0.90 -49.86 11.83 21.45 0.25 -49.61 16 19 Si 0.94 42.83 29.54 68.60 2.03 44.85 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C -0.19 -7.42 9.96 30.62 0.30 -7.12 16 24 C -0.14 -6.15 8.84 30.62 0.27 -5.88 16 25 C 0.15 3.12 2.68 44.97 0.12 3.24 16 26 H 0.09 1.62 8.13 -2.38 -0.02 1.60 16 27 C 0.07 1.62 4.65 86.30 0.40 2.02 16 28 N -0.84 -13.37 6.17 -186.72 -1.15 -14.52 16 29 H 0.05 0.69 8.13 -2.38 -0.02 0.67 16 30 H 0.10 1.71 5.57 -2.39 -0.01 1.69 16 31 H 0.06 0.73 8.11 -2.39 -0.02 0.71 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.14 4.24 3.70 -85.92 -0.32 3.93 16 38 H 0.41 15.76 7.96 -92.71 -0.74 15.02 16 39 H 0.04 2.15 8.10 -2.39 -0.02 2.14 16 40 H 0.06 2.32 8.09 -2.39 -0.02 2.30 16 41 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 42 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.07 3.45 7.57 -2.39 -0.02 3.43 16 45 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.05 1.47 7.43 -2.39 -0.02 1.46 16 47 H 0.05 1.40 6.00 -3.87 -0.02 1.37 16 48 H 0.35 4.98 9.08 -89.70 -0.81 4.17 16 49 H 0.35 4.21 8.63 -89.69 -0.77 3.43 16 Total: -1.00 -58.18 378.97 -0.55 -58.73 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -1.66 Total: 39.35 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 4.96 Total: 5.30 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -5.79 Total: -109.60 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.08 Total: -38.64 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -58.18 -0.55 -58.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418819389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.341 kcal (2) G-P(sol) polarization free energy of solvation -58.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds