Wall clock time and date at job start Fri Apr 10 2020 18:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.49715 * 2 1 4 4 C 1.53041 * 109.49914 * 120.06465 * 2 1 3 5 5 C 1.53040 * 109.53449 * 58.58960 * 4 2 1 6 6 C 1.53191 * 109.31499 * 61.36609 * 5 4 2 7 7 N 1.46926 * 108.77424 * 305.36523 * 6 5 4 8 8 C 1.34778 * 120.62926 * 233.58535 * 7 6 5 9 9 O 1.21342 * 120.00102 * 188.92644 * 8 7 6 10 10 C 1.49455 * 119.99906 * 8.92674 * 8 7 6 11 11 O 1.21346 * 120.00037 * 7.03673 * 10 8 7 12 12 N 1.34772 * 119.99880 * 187.03094 * 10 8 7 13 13 C 1.46502 * 120.00265 * 185.03923 * 12 10 8 14 14 C 1.52996 * 109.47535 * 184.79666 * 13 12 10 15 15 C 1.50703 * 115.54891 * 294.77375 * 14 13 12 16 16 H 1.07994 * 119.99946 * 92.71483 * 15 14 13 17 17 C 1.37870 * 119.99825 * 272.71197 * 15 14 13 18 18 N 1.31519 * 119.99900 * 183.46990 * 17 15 14 19 19 Si 1.86808 * 120.00354 * 3.19367 * 17 15 14 20 20 H 1.48495 * 109.47174 * 265.26659 * 19 17 15 21 21 H 1.48503 * 109.46410 * 25.26416 * 19 17 15 22 22 H 1.48498 * 109.47361 * 145.26151 * 19 17 15 23 23 C 1.52995 * 117.49789 * 80.44180 * 14 13 12 24 24 C 1.52998 * 117.49913 * 149.10141 * 14 13 12 25 25 C 1.46923 * 118.74089 * 53.85675 * 7 6 5 26 26 H 1.09005 * 109.58252 * 65.92944 * 25 7 6 27 27 C 1.52998 * 109.58890 * 186.35328 * 25 7 6 28 28 N 1.46906 * 109.46885 * 286.73951 * 27 25 7 29 29 H 1.09004 * 109.47506 * 299.93200 * 1 2 3 30 30 H 1.09001 * 109.47328 * 59.93651 * 1 2 3 31 31 H 1.08998 * 109.47209 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.45883 * 298.56989 * 4 2 1 33 33 H 1.09002 * 109.45873 * 178.60798 * 4 2 1 34 34 H 1.09001 * 109.49878 * 301.41344 * 5 4 2 35 35 H 1.09001 * 109.49724 * 181.31861 * 5 4 2 36 36 H 1.09002 * 109.58622 * 185.57837 * 6 5 4 37 37 H 1.09000 * 109.58783 * 65.15121 * 6 5 4 38 38 H 0.97003 * 120.00297 * 5.04646 * 12 10 8 39 39 H 1.09007 * 109.47046 * 64.79576 * 13 12 10 40 40 H 1.09005 * 109.47007 * 304.79945 * 13 12 10 41 41 H 0.97004 * 119.99397 * 179.72086 * 18 17 15 42 42 H 1.08997 * 117.50219 * 215.00519 * 23 14 13 43 43 H 1.09010 * 117.50128 * 0.02562 * 23 14 13 44 44 H 1.09006 * 117.50108 * 359.97438 * 24 14 13 45 45 H 1.08999 * 117.50045 * 144.97429 * 24 14 13 46 46 H 1.08999 * 109.46938 * 46.73313 * 27 25 7 47 47 H 1.08998 * 109.47529 * 166.74103 * 27 25 7 48 48 H 1.00903 * 110.99400 * 179.97438 * 28 27 25 49 49 H 1.00896 * 111.00171 * 303.94948 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 1.5030 -2.1554 1.2665 6 6 2.0140 -2.9040 0.0315 7 7 1.6516 -2.1384 -1.1691 8 6 0.9748 -2.7226 -2.1776 9 8 0.8222 -2.1333 -3.2273 10 6 0.4124 -4.0962 -2.0032 11 8 0.4524 -4.6347 -0.9165 12 7 -0.1393 -4.7368 -3.0528 13 6 -0.7890 -6.0355 -2.8593 14 6 -1.2217 -6.5965 -4.2154 15 6 -2.2869 -5.8093 -4.9344 16 1 -2.0069 -5.0474 -5.6467 17 6 -3.6187 -6.0619 -4.6828 18 7 -4.5483 -5.4234 -5.3594 19 14 -4.1028 -7.3168 -3.3864 20 1 -4.3352 -8.6328 -4.0337 21 1 -3.0112 -7.4424 -2.3874 22 1 -5.3465 -6.8725 -2.7074 23 6 -0.1540 -7.2837 -5.0689 24 6 -1.2361 -8.1176 -4.3786 25 6 2.0461 -0.7256 -1.2518 26 1 3.1327 -0.6518 -1.2983 27 6 1.4323 -0.0940 -2.5029 28 7 2.1394 -0.5814 -3.6947 29 1 -0.3634 0.5128 0.8906 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6987 -0.1952 2.1389 33 1 3.1305 -0.7440 1.2355 34 1 0.4132 -2.1352 1.2545 35 1 1.8480 -2.6623 2.1677 36 1 1.5554 -3.8918 -0.0128 37 1 3.0980 -3.0042 0.0875 38 1 -0.1062 -4.3379 -3.9364 39 1 -1.6640 -5.9126 -2.2210 40 1 -0.0890 -6.7252 -2.3875 41 1 -5.4853 -5.6042 -5.1852 42 1 -0.2218 -7.1665 -6.1504 43 1 0.8568 -7.3366 -4.6641 44 1 -0.9369 -8.7189 -3.5200 45 1 -2.0163 -8.5492 -5.0057 46 1 0.3791 -0.3671 -2.5683 47 1 1.5235 0.9906 -2.4445 48 1 1.7519 -0.1787 -4.5349 49 1 3.1292 -0.3975 -3.6284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418819390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:28 Heat of formation + Delta-G solvation = 4.459464 kcal Electronic energy + Delta-G solvation = -29422.459306 eV Core-core repulsion = 25580.258184 eV Total energy + Delta-G solvation = -3842.201122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94490 -39.01201 -37.45237 -37.10200 -34.49901 -33.97619 -32.92466 -32.12338 -31.19392 -27.65438 -27.07144 -26.08634 -25.35963 -24.03061 -22.97936 -21.77186 -21.43525 -19.95611 -19.34220 -18.64422 -17.35216 -16.49173 -16.34864 -15.94947 -15.38318 -15.34993 -15.07762 -14.99345 -14.83032 -14.52817 -14.25295 -13.81265 -13.74493 -13.24349 -13.08948 -12.95586 -12.72828 -12.58792 -12.39205 -12.36973 -12.15648 -11.91529 -11.65978 -11.18231 -11.15752 -11.06247 -10.81038 -10.77326 -10.54464 -10.50179 -10.17938 -9.88480 -9.67039 -9.21048 -8.80244 -8.64210 -8.59356 -8.41151 -8.29216 -8.01149 -6.15029 -4.19762 1.95999 2.73463 3.27349 3.37819 3.41658 3.70638 3.91522 4.39104 4.41898 4.49559 4.68711 4.79725 4.92191 5.01727 5.05009 5.13020 5.15174 5.18736 5.35581 5.45074 5.47005 5.51311 5.60123 5.64824 5.74458 5.79844 5.92233 5.97233 5.99742 6.04741 6.04848 6.10915 6.13681 6.22106 6.34757 6.42403 6.44432 6.63099 6.69400 6.94810 7.05552 7.09392 7.35938 7.45138 7.63041 7.67133 7.88790 8.35075 8.42420 8.57359 8.87177 9.47534 10.96273 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.003667 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.325586 B = 7633.538046 C = 7832.731128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.133 4.133 6 C 0.055 3.945 7 N -0.582 5.582 8 C 0.492 3.508 9 O -0.452 6.452 10 C 0.497 3.503 11 O -0.537 6.537 12 N -0.664 5.664 13 C 0.151 3.849 14 C -0.018 4.018 15 C -0.491 4.491 16 H 0.080 0.920 17 C 0.081 3.919 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.256 1.256 22 H -0.293 1.293 23 C -0.176 4.176 24 C -0.190 4.190 25 C 0.154 3.846 26 H 0.068 0.932 27 C 0.074 3.926 28 N -0.809 5.809 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.157 0.843 37 H 0.053 0.947 38 H 0.418 0.582 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.265 0.735 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.017 0.983 48 H 0.339 0.661 49 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.353 9.578 11.033 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.171 4.171 6 C -0.067 4.067 7 N -0.318 5.318 8 C 0.273 3.727 9 O -0.321 6.321 10 C 0.278 3.722 11 O -0.419 6.419 12 N -0.313 5.313 13 C 0.028 3.972 14 C -0.019 4.019 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.122 4.122 18 N -0.530 5.530 19 Si 0.704 3.296 20 H -0.204 1.204 21 H -0.180 1.180 22 H -0.220 1.220 23 C -0.214 4.214 24 C -0.228 4.228 25 C 0.050 3.950 26 H 0.086 0.914 27 C -0.057 4.057 28 N -0.340 5.340 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.173 0.827 37 H 0.071 0.929 38 H 0.255 0.745 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.035 0.965 48 H 0.152 0.848 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.762 8.817 11.333 19.889 hybrid contribution -0.082 0.611 0.282 0.678 sum 13.679 9.429 11.615 20.271 Atomic orbital electron populations 1.21893 0.94547 1.02714 1.01522 1.21571 0.96930 0.98931 0.94633 0.90530 1.21571 1.00226 0.96325 0.97126 1.21898 1.01826 0.95191 0.98155 1.23102 1.00107 1.00578 0.82880 1.47663 1.55439 1.10190 1.18531 1.20099 0.80992 0.87335 0.84273 1.90940 1.53504 1.62791 1.24909 1.20436 0.79987 0.86858 0.84918 1.90250 1.58554 1.67748 1.25341 1.45775 1.53242 1.20990 1.11296 1.21353 0.95535 0.82222 0.98079 1.19591 0.98263 0.91255 0.92771 1.20209 0.88277 1.20333 1.24020 0.90211 1.24969 0.96340 0.95577 0.95360 1.69900 1.00591 1.42093 1.40389 0.86882 0.78195 0.81681 0.82796 1.20446 1.18014 1.21971 1.22845 0.93017 1.06339 0.99168 1.22954 1.02325 0.95035 1.02496 1.21371 0.98228 0.80823 0.94589 0.91431 1.21925 1.00777 0.93829 0.89184 1.59034 1.05145 1.66144 1.03640 0.92754 0.92521 0.91839 0.91897 0.92098 0.91108 0.91173 0.82737 0.92865 0.74521 0.91397 0.92929 0.92503 0.89284 0.90845 0.90721 0.89112 0.89187 0.96516 0.84776 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.24 37.15 0.31 -1.27 16 2 C -0.10 -0.95 2.78 -90.28 -0.25 -1.20 16 3 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 4 C -0.11 -1.00 5.43 -26.69 -0.14 -1.15 16 5 C -0.13 -1.37 5.74 -26.61 -0.15 -1.53 16 6 C 0.05 0.67 6.24 -3.71 -0.02 0.65 16 7 N -0.58 -7.77 2.40 -165.47 -0.40 -8.17 16 8 C 0.49 8.03 7.43 -11.58 -0.09 7.95 16 9 O -0.45 -7.86 10.64 5.50 0.06 -7.81 16 10 C 0.50 9.00 7.76 -11.58 -0.09 8.91 16 11 O -0.54 -10.08 13.13 5.50 0.07 -10.01 16 12 N -0.66 -12.80 5.46 -60.73 -0.33 -13.13 16 13 C 0.15 3.12 5.10 -4.04 -0.02 3.10 16 14 C -0.02 -0.38 0.82 -155.66 -0.13 -0.51 16 15 C -0.49 -12.96 9.18 -34.44 -0.32 -13.27 16 16 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 17 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 19 Si 0.88 21.09 24.98 -169.99 -4.25 16.84 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.26 -5.82 5.62 56.52 0.32 -5.50 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C -0.18 -3.40 9.96 -26.70 -0.27 -3.67 16 24 C -0.19 -3.85 7.60 -26.70 -0.20 -4.05 16 25 C 0.15 1.71 2.80 -67.38 -0.19 1.52 16 26 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 27 C 0.07 0.87 4.49 -3.82 -0.02 0.85 16 28 N -0.81 -9.87 6.64 -10.37 -0.07 -9.94 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 6.69 -51.93 -0.35 0.26 16 31 H 0.06 0.81 5.97 -51.93 -0.31 0.50 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.83 6.33 -51.93 -0.33 0.50 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.16 2.29 3.87 -56.39 -0.22 2.07 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.42 8.20 7.85 -40.82 -0.32 7.88 16 39 H 0.07 1.52 6.61 -51.92 -0.34 1.18 16 40 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 43 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.09 1.93 7.34 -51.93 -0.38 1.55 16 46 H 0.09 1.31 5.49 -51.93 -0.28 1.02 16 47 H 0.02 0.17 8.09 -51.93 -0.42 -0.25 16 48 H 0.34 3.95 9.08 -39.29 -0.36 3.60 16 49 H 0.32 3.26 8.94 -39.29 -0.35 2.90 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -29.17 368.09 -8.22 -37.38 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -7.95 Total: 16.50 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.68 Total: -1.54 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.02 Total: -56.92 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.13 Total: -17.81 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.25 Total: 16.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.17 -8.22 -37.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418819390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.844 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds