Wall clock time and date at job start Fri Apr 10 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.49715 * 2 1 4 4 C 1.53041 * 109.49914 * 120.06465 * 2 1 3 5 5 C 1.53040 * 109.53449 * 58.58960 * 4 2 1 6 6 C 1.53191 * 109.31499 * 61.36609 * 5 4 2 7 7 N 1.46926 * 108.77424 * 305.36523 * 6 5 4 8 8 C 1.34778 * 120.62926 * 233.58535 * 7 6 5 9 9 O 1.21342 * 120.00102 * 188.92644 * 8 7 6 10 10 C 1.49455 * 119.99906 * 8.92674 * 8 7 6 11 11 O 1.21346 * 120.00037 * 7.03673 * 10 8 7 12 12 N 1.34772 * 119.99880 * 187.03094 * 10 8 7 13 13 C 1.46502 * 120.00265 * 185.03923 * 12 10 8 14 14 C 1.52996 * 109.47535 * 184.79666 * 13 12 10 15 15 C 1.50703 * 115.54891 * 294.77375 * 14 13 12 16 16 H 1.07994 * 119.99946 * 92.71483 * 15 14 13 17 17 C 1.37870 * 119.99825 * 272.71197 * 15 14 13 18 18 N 1.31519 * 119.99900 * 183.46990 * 17 15 14 19 19 Si 1.86808 * 120.00354 * 3.19367 * 17 15 14 20 20 H 1.48495 * 109.47174 * 265.26659 * 19 17 15 21 21 H 1.48503 * 109.46410 * 25.26416 * 19 17 15 22 22 H 1.48498 * 109.47361 * 145.26151 * 19 17 15 23 23 C 1.52995 * 117.49789 * 80.44180 * 14 13 12 24 24 C 1.52998 * 117.49913 * 149.10141 * 14 13 12 25 25 C 1.46923 * 118.74089 * 53.85675 * 7 6 5 26 26 H 1.09005 * 109.58252 * 65.92944 * 25 7 6 27 27 C 1.52998 * 109.58890 * 186.35328 * 25 7 6 28 28 N 1.46906 * 109.46885 * 286.73951 * 27 25 7 29 29 H 1.09004 * 109.47506 * 299.93200 * 1 2 3 30 30 H 1.09001 * 109.47328 * 59.93651 * 1 2 3 31 31 H 1.08998 * 109.47209 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.45883 * 298.56989 * 4 2 1 33 33 H 1.09002 * 109.45873 * 178.60798 * 4 2 1 34 34 H 1.09001 * 109.49878 * 301.41344 * 5 4 2 35 35 H 1.09001 * 109.49724 * 181.31861 * 5 4 2 36 36 H 1.09002 * 109.58622 * 185.57837 * 6 5 4 37 37 H 1.09000 * 109.58783 * 65.15121 * 6 5 4 38 38 H 0.97003 * 120.00297 * 5.04646 * 12 10 8 39 39 H 1.09007 * 109.47046 * 64.79576 * 13 12 10 40 40 H 1.09005 * 109.47007 * 304.79945 * 13 12 10 41 41 H 0.97004 * 119.99397 * 179.72086 * 18 17 15 42 42 H 1.08997 * 117.50219 * 215.00519 * 23 14 13 43 43 H 1.09010 * 117.50128 * 0.02562 * 23 14 13 44 44 H 1.09006 * 117.50108 * 359.97438 * 24 14 13 45 45 H 1.08999 * 117.50045 * 144.97429 * 24 14 13 46 46 H 1.08999 * 109.46938 * 46.73313 * 27 25 7 47 47 H 1.08998 * 109.47529 * 166.74103 * 27 25 7 48 48 H 1.00903 * 110.99400 * 179.97438 * 28 27 25 49 49 H 1.00896 * 111.00171 * 303.94948 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 1.5030 -2.1554 1.2665 6 6 2.0140 -2.9040 0.0315 7 7 1.6516 -2.1384 -1.1691 8 6 0.9748 -2.7226 -2.1776 9 8 0.8222 -2.1333 -3.2273 10 6 0.4124 -4.0962 -2.0032 11 8 0.4524 -4.6347 -0.9165 12 7 -0.1393 -4.7368 -3.0528 13 6 -0.7890 -6.0355 -2.8593 14 6 -1.2217 -6.5965 -4.2154 15 6 -2.2869 -5.8093 -4.9344 16 1 -2.0069 -5.0474 -5.6467 17 6 -3.6187 -6.0619 -4.6828 18 7 -4.5483 -5.4234 -5.3594 19 14 -4.1028 -7.3168 -3.3864 20 1 -4.3352 -8.6328 -4.0337 21 1 -3.0112 -7.4424 -2.3874 22 1 -5.3465 -6.8725 -2.7074 23 6 -0.1540 -7.2837 -5.0689 24 6 -1.2361 -8.1176 -4.3786 25 6 2.0461 -0.7256 -1.2518 26 1 3.1327 -0.6518 -1.2983 27 6 1.4323 -0.0940 -2.5029 28 7 2.1394 -0.5814 -3.6947 29 1 -0.3634 0.5128 0.8906 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6987 -0.1952 2.1389 33 1 3.1305 -0.7440 1.2355 34 1 0.4132 -2.1352 1.2545 35 1 1.8480 -2.6623 2.1677 36 1 1.5554 -3.8918 -0.0128 37 1 3.0980 -3.0042 0.0875 38 1 -0.1062 -4.3379 -3.9364 39 1 -1.6640 -5.9126 -2.2210 40 1 -0.0890 -6.7252 -2.3875 41 1 -5.4853 -5.6042 -5.1852 42 1 -0.2218 -7.1665 -6.1504 43 1 0.8568 -7.3366 -4.6641 44 1 -0.9369 -8.7189 -3.5200 45 1 -2.0163 -8.5492 -5.0057 46 1 0.3791 -0.3671 -2.5683 47 1 1.5235 0.9906 -2.4445 48 1 1.7519 -0.1787 -4.5349 49 1 3.1292 -0.3975 -3.6284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418819390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:27 Heat of formation + Delta-G solvation = -16.740895 kcal Electronic energy + Delta-G solvation = -29423.378623 eV Core-core repulsion = 25580.258184 eV Total energy + Delta-G solvation = -3843.120439 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10803 -40.32018 -38.76670 -38.56744 -35.51483 -35.27584 -34.23947 -34.06239 -32.08433 -29.04020 -28.22179 -27.49128 -26.84119 -25.09569 -24.13346 -23.32720 -22.46983 -21.36129 -20.86144 -19.73783 -18.71224 -18.17634 -17.63990 -17.12514 -16.97312 -16.47950 -16.34330 -16.22802 -16.06166 -15.74196 -15.35584 -15.09652 -14.86357 -14.73323 -14.55166 -14.25840 -14.04077 -14.01886 -13.59889 -13.48207 -13.33012 -13.10125 -12.90165 -12.66068 -12.61966 -12.17801 -12.02334 -11.95573 -11.91958 -11.67716 -11.58187 -11.33916 -10.99130 -10.94407 -10.68460 -10.45069 -10.04467 -9.74678 -9.45647 -8.97919 -8.28862 -6.36406 0.60346 1.35286 1.40124 1.48873 1.53286 2.36985 2.38016 2.62997 3.05833 3.22804 3.48175 3.61852 3.75546 3.91433 3.99847 4.11498 4.20289 4.26764 4.29811 4.34958 4.41067 4.46846 4.50498 4.61517 4.63428 4.68127 4.74608 4.78738 4.87975 4.95058 5.01320 5.06051 5.09253 5.14884 5.18660 5.21108 5.28258 5.30741 5.48943 5.50775 5.54373 5.69564 5.74776 6.22812 6.29365 6.46268 6.48710 6.72828 6.78132 6.97410 7.24050 7.34123 8.86272 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.003667 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.325586 B = 7633.538046 C = 7832.731128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.102 0.898 4 C -0.109 4.109 5 C -0.129 4.129 6 C 0.052 3.948 7 N -0.573 5.573 8 C 0.488 3.512 9 O -0.470 6.470 10 C 0.493 3.507 11 O -0.544 6.544 12 N -0.672 5.672 13 C 0.161 3.839 14 C -0.043 4.043 15 C -0.482 4.482 16 H 0.037 0.963 17 C 0.025 3.975 18 N -0.946 5.946 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.232 1.232 22 H -0.302 1.302 23 C -0.156 4.156 24 C -0.183 4.183 25 C 0.151 3.849 26 H 0.085 0.915 27 C 0.078 3.922 28 N -0.823 5.823 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.264 0.736 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.039 0.961 48 H 0.339 0.661 49 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.004 9.497 13.448 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.120 0.880 4 C -0.147 4.147 5 C -0.167 4.167 6 C -0.069 4.069 7 N -0.308 5.308 8 C 0.269 3.731 9 O -0.341 6.341 10 C 0.276 3.724 11 O -0.426 6.426 12 N -0.321 5.321 13 C 0.038 3.962 14 C -0.044 4.044 15 C -0.520 4.520 16 H 0.055 0.945 17 C -0.173 4.173 18 N -0.586 5.586 19 Si 0.757 3.243 20 H -0.193 1.193 21 H -0.155 1.155 22 H -0.229 1.229 23 C -0.193 4.193 24 C -0.221 4.221 25 C 0.048 3.952 26 H 0.103 0.897 27 C -0.053 4.053 28 N -0.355 5.355 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.152 0.848 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.465 8.738 13.788 23.185 hybrid contribution -0.839 0.724 -0.505 1.218 sum 15.626 9.463 13.284 22.587 Atomic orbital electron populations 1.21863 0.95785 1.00966 1.01863 1.21602 0.95755 1.00176 0.94015 0.87954 1.21559 1.01085 0.94835 0.97206 1.21865 1.00654 0.96558 0.97672 1.23068 1.00988 0.99607 0.83234 1.47724 1.53998 1.11211 1.17902 1.19874 0.81705 0.86612 0.84950 1.90950 1.54572 1.62825 1.25767 1.20899 0.79534 0.87585 0.84428 1.90285 1.58649 1.68275 1.25376 1.45796 1.53823 1.20981 1.11518 1.21120 0.95294 0.83152 0.96680 1.19434 0.98858 0.92238 0.93855 1.20346 0.89589 1.19271 1.22764 0.94453 1.25774 0.96424 0.97696 0.97443 1.70048 1.00936 1.44682 1.42886 0.85984 0.78019 0.79522 0.80768 1.19261 1.15515 1.22914 1.22865 0.93882 1.03966 0.98588 1.23025 1.02200 0.93556 1.03318 1.21622 0.99126 0.79278 0.95165 0.89675 1.21821 0.98927 0.95067 0.89490 1.58944 1.06012 1.66712 1.03850 0.91312 0.93306 0.94613 0.90341 0.90485 0.93056 0.89561 0.85135 0.90981 0.75062 0.93538 0.90946 0.92670 0.89991 0.87920 0.87725 0.90297 0.92408 0.94335 0.84786 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.24 71.98 0.59 -2.34 16 2 C -0.10 -1.52 2.78 -10.57 -0.03 -1.55 16 3 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 4 C -0.11 -1.51 5.43 30.62 0.17 -1.35 16 5 C -0.13 -2.40 5.74 30.67 0.18 -2.22 16 6 C 0.05 1.19 6.24 86.36 0.54 1.73 16 7 N -0.57 -14.67 2.40 -795.79 -1.91 -16.58 16 8 C 0.49 16.02 7.43 87.27 0.65 16.67 16 9 O -0.47 -16.70 10.64 -3.22 -0.03 -16.74 16 10 C 0.49 17.98 7.76 87.27 0.68 18.66 16 11 O -0.54 -20.28 13.13 -3.23 -0.04 -20.32 16 12 N -0.67 -26.16 5.46 -464.40 -2.54 -28.70 16 13 C 0.16 6.50 5.10 86.38 0.44 6.94 16 14 C -0.04 -1.84 0.82 -52.93 -0.04 -1.89 16 15 C -0.48 -26.24 9.18 25.60 0.23 -26.00 16 16 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 17 C 0.02 1.39 5.47 84.65 0.46 1.86 16 18 N -0.95 -58.50 13.96 21.45 0.30 -58.20 16 19 Si 0.93 43.68 24.98 68.60 1.71 45.40 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.23 -9.91 5.62 99.48 0.56 -9.35 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 23 C -0.16 -5.71 9.96 30.62 0.30 -5.41 16 24 C -0.18 -6.96 7.60 30.62 0.23 -6.73 16 25 C 0.15 3.02 2.80 45.12 0.13 3.15 16 26 H 0.09 1.48 8.07 -2.38 -0.02 1.46 16 27 C 0.08 1.76 4.49 86.30 0.39 2.15 16 28 N -0.82 -19.54 6.64 -186.71 -1.24 -20.78 16 29 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.05 1.03 6.69 -2.39 -0.02 1.01 16 31 H 0.03 0.90 5.97 -2.39 -0.01 0.89 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 1.16 6.33 -2.39 -0.02 1.15 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.13 3.76 3.87 -72.99 -0.28 3.47 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.41 16.76 7.85 -92.71 -0.73 16.04 16 39 H 0.05 2.06 6.61 -2.38 -0.02 2.04 16 40 H 0.07 2.63 8.05 -2.38 -0.02 2.61 16 41 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 45 H 0.08 3.20 7.34 -2.39 -0.02 3.18 16 46 H 0.06 1.71 5.49 -2.39 -0.01 1.70 16 47 H 0.04 0.71 8.09 -2.39 -0.02 0.69 16 48 H 0.34 7.90 9.08 -89.69 -0.81 7.09 16 49 H 0.33 6.26 8.94 -89.70 -0.80 5.46 16 Total: -1.00 -65.94 368.09 -0.60 -66.55 By element: Atomic # 1 Polarization: 47.47 SS G_CDS: -1.77 Total: 45.70 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.92 Total: 3.67 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -5.39 Total: -124.26 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.08 Total: -37.06 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.71 Total: 45.40 kcal Total: -65.94 -0.60 -66.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418819390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.806 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds