Wall clock time and date at job start Fri Apr 10 2020 18:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.44834 * 2 1 4 4 C 1.53036 * 109.46091 * 119.96670 * 2 1 3 5 5 C 1.53185 * 109.31452 * 181.38665 * 4 2 1 6 6 N 1.46924 * 108.77460 * 305.36411 * 5 4 2 7 7 C 1.34773 * 120.63225 * 233.58127 * 6 5 4 8 8 O 1.21355 * 120.00167 * 187.14485 * 7 6 5 9 9 C 1.49450 * 120.00031 * 7.15058 * 7 6 5 10 10 O 1.21346 * 120.00138 * 6.65647 * 9 7 6 11 11 N 1.34779 * 120.00081 * 186.65500 * 9 7 6 12 12 C 1.46500 * 119.99749 * 174.87195 * 11 9 7 13 13 C 1.52998 * 109.46842 * 185.09758 * 12 11 9 14 14 C 1.50702 * 115.56599 * 273.40616 * 13 12 11 15 15 H 1.07992 * 120.00157 * 142.12784 * 14 13 12 16 16 C 1.37880 * 119.99599 * 322.12685 * 14 13 12 17 17 N 1.31508 * 120.00083 * 343.61886 * 16 14 13 18 18 Si 1.86799 * 119.99684 * 163.61396 * 16 14 13 19 19 H 1.48508 * 109.46935 * 60.00565 * 18 16 14 20 20 H 1.48499 * 109.47225 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47473 * 300.00258 * 18 16 14 22 22 C 1.53002 * 117.49839 * 127.71632 * 13 12 11 23 23 C 1.52996 * 60.00390 * 252.50931 * 22 13 12 24 24 C 1.46930 * 118.73801 * 53.86301 * 6 5 4 25 25 C 1.53040 * 109.45904 * 240.03584 * 2 1 3 26 26 H 1.09000 * 109.49936 * 298.59500 * 25 2 1 27 27 C 1.52994 * 109.49770 * 58.66322 * 25 2 1 28 28 N 1.46903 * 109.47267 * 185.00040 * 27 25 2 29 29 H 1.09005 * 109.47287 * 300.03303 * 1 2 3 30 30 H 1.09003 * 109.47520 * 60.02951 * 1 2 3 31 31 H 1.09002 * 109.47138 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.49653 * 61.43409 * 4 2 1 33 33 H 1.09008 * 109.49768 * 301.33763 * 4 2 1 34 34 H 1.08998 * 109.58950 * 185.57602 * 5 4 2 35 35 H 1.09001 * 109.58814 * 65.15165 * 5 4 2 36 36 H 0.97004 * 120.00192 * 354.87213 * 11 9 7 37 37 H 1.08998 * 109.47314 * 65.10437 * 12 11 9 38 38 H 1.09001 * 109.47422 * 305.09783 * 12 11 9 39 39 H 0.97006 * 120.00210 * 185.01037 * 17 16 14 40 40 H 1.09007 * 117.49793 * 0.02562 * 22 13 12 41 41 H 1.09003 * 117.50330 * 145.01863 * 22 13 12 42 42 H 1.08996 * 117.50048 * 252.51070 * 23 22 13 43 43 H 1.09003 * 117.49778 * 107.48195 * 23 22 13 44 44 H 1.09000 * 109.58802 * 65.92475 * 24 6 5 45 45 H 1.09001 * 109.58471 * 186.35162 * 24 6 5 46 46 H 1.09002 * 109.47414 * 304.99929 * 27 25 2 47 47 H 1.09003 * 109.47399 * 64.99837 * 27 25 2 48 48 H 1.00894 * 111.00211 * 56.03918 * 28 27 25 49 49 H 1.00903 * 111.00327 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2500 5 6 3.5713 -0.6885 1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9621 -2.2571 0.0000 8 8 5.4623 -2.6245 -1.0429 9 6 5.3376 -2.9229 1.2842 10 8 4.7513 -2.6401 2.3083 11 7 6.3274 -3.8374 1.3049 12 6 6.7717 -4.4072 2.5793 13 6 7.9797 -5.3147 2.3386 14 6 7.6589 -6.7414 1.9742 15 1 8.2619 -7.2608 1.2442 16 6 6.5957 -7.3834 2.5728 17 7 6.0649 -6.8924 3.6712 18 14 5.9091 -8.9507 1.8233 19 1 6.9735 -9.9853 1.7780 20 1 4.7779 -9.4410 2.6512 21 1 5.4304 -8.6722 0.4455 22 6 9.2300 -5.0658 3.1846 23 6 9.2208 -4.6851 1.7028 24 6 3.5756 -0.6847 -1.2643 25 6 2.0398 -0.7207 -1.2501 26 1 1.6973 -1.7554 -1.2387 27 6 1.5027 -0.0188 -2.4989 28 7 1.8927 -0.7791 -3.6939 29 1 -0.3634 0.5144 0.8897 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7556 1.2382 33 1 1.6572 -0.2207 2.1399 34 1 3.9416 -1.2845 2.0984 35 1 3.9142 0.3410 1.3674 36 1 6.7457 -4.1182 0.4760 37 1 5.9618 -4.9894 3.0190 38 1 7.0515 -3.6025 3.2593 39 1 5.3656 -7.3814 4.1327 40 1 9.1918 -4.2557 3.9130 41 1 9.8205 -5.9338 3.4777 42 1 9.8052 -5.3028 1.0209 43 1 9.1766 -3.6243 1.4560 44 1 3.9188 0.3451 -1.3631 45 1 3.9487 -1.2782 -2.0989 46 1 0.4156 0.0392 -2.4440 47 1 1.9177 0.9874 -2.5571 48 1 1.5747 -1.7348 -3.6342 49 1 1.5499 -0.3353 -4.5328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418821942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:43 Heat of formation + Delta-G solvation = -36.187616 kcal Electronic energy + Delta-G solvation = -28543.133978 eV Core-core repulsion = 24699.170267 eV Total energy + Delta-G solvation = -3843.963712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67769 -38.94036 -37.77468 -36.84173 -35.22311 -33.78520 -33.07165 -32.28660 -30.64053 -28.60154 -26.89648 -25.74428 -25.26104 -23.90160 -22.05101 -21.92037 -21.26552 -20.22343 -19.57209 -19.10664 -17.46425 -16.66925 -16.24682 -15.90719 -15.59798 -15.48355 -15.11735 -14.85847 -14.77408 -14.48655 -14.18737 -13.96497 -13.50253 -13.45431 -13.24977 -13.14663 -12.80483 -12.63014 -12.41676 -11.91220 -11.87612 -11.72079 -11.63160 -11.28383 -11.13461 -10.97586 -10.92206 -10.87441 -10.53388 -10.48937 -10.37296 -10.33860 -9.56174 -9.25941 -8.97475 -8.86718 -8.69859 -8.56270 -8.37144 -8.05054 -6.15929 -4.17917 1.84790 2.72917 3.25028 3.31683 3.35239 3.64669 3.94334 4.17700 4.30496 4.52662 4.57071 4.72316 4.80720 4.84637 4.98920 5.15879 5.22036 5.29627 5.34716 5.41466 5.45417 5.46108 5.55032 5.65063 5.75137 5.83228 5.93256 5.97155 6.01623 6.04506 6.16237 6.26103 6.30890 6.42444 6.50357 6.60327 6.62563 6.82501 6.83388 6.97550 7.13855 7.21010 7.29330 7.33420 7.52231 7.86955 7.90172 8.22111 8.30012 8.60204 8.78396 9.40984 10.86024 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.003191 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.064722 B = 8772.582720 C = 9045.826271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.123 4.123 5 C 0.046 3.954 6 N -0.586 5.586 7 C 0.508 3.492 8 O -0.523 6.523 9 C 0.496 3.504 10 O -0.526 6.526 11 N -0.666 5.666 12 C 0.138 3.862 13 C 0.037 3.963 14 C -0.496 4.496 15 H 0.064 0.936 16 C 0.072 3.928 17 N -0.872 5.872 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.190 4.190 23 C -0.209 4.209 24 C 0.122 3.878 25 C -0.094 4.094 26 H 0.074 0.926 27 C 0.066 3.934 28 N -0.851 5.851 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.058 0.942 36 H 0.409 0.591 37 H 0.127 0.873 38 H 0.043 0.957 39 H 0.267 0.733 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.034 0.966 47 H 0.072 0.928 48 H 0.342 0.658 49 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 14.878 -7.942 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.161 4.161 5 C -0.075 4.075 6 N -0.320 5.320 7 C 0.291 3.709 8 O -0.399 6.399 9 C 0.277 3.723 10 O -0.407 6.407 11 N -0.314 5.314 12 C 0.016 3.984 13 C 0.036 3.964 14 C -0.533 4.533 15 H 0.082 0.918 16 C -0.132 4.132 17 N -0.508 5.508 18 Si 0.720 3.280 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.228 4.228 23 C -0.246 4.246 24 C 0.000 4.000 25 C -0.114 4.114 26 H 0.092 0.908 27 C -0.065 4.065 28 N -0.381 5.381 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.179 0.821 35 H 0.076 0.924 36 H 0.245 0.755 37 H 0.145 0.855 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.120 0.880 46 H 0.052 0.948 47 H 0.090 0.910 48 H 0.155 0.845 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.141 14.998 -7.428 19.569 hybrid contribution -1.243 -0.903 -0.901 1.781 sum -11.384 14.095 -8.330 19.941 Atomic orbital electron populations 1.21907 0.95264 1.01880 1.01562 1.21184 0.95515 0.99544 0.94654 0.91055 1.21895 0.95733 1.01241 0.97229 1.23304 0.94348 1.00823 0.89043 1.47962 1.41999 1.33787 1.08248 1.20406 0.80022 0.80561 0.89931 1.90734 1.52273 1.63424 1.33423 1.19970 0.81866 0.81940 0.88546 1.90232 1.52235 1.63293 1.34927 1.46115 1.33734 1.38458 1.13117 1.21600 1.00734 0.94468 0.81550 1.19134 0.84595 0.94552 0.98081 1.20501 1.13207 0.95354 1.24269 0.91756 1.24982 0.96090 0.97782 0.94303 1.69768 1.27262 1.38560 1.15227 0.86640 0.78807 0.82889 0.79700 1.20109 1.21129 1.19910 1.22964 1.06650 1.01401 0.91802 1.22891 1.06442 0.98965 0.96345 1.21717 0.92571 0.99126 0.86617 1.21636 0.95638 1.00230 0.93884 0.90806 1.21872 0.97408 0.97620 0.89587 1.58657 1.68603 1.06561 1.04251 0.92544 0.92646 0.92719 0.91451 0.90710 0.82115 0.92401 0.75470 0.85531 0.93822 0.92315 0.91488 0.90024 0.90283 0.91232 0.91720 0.87950 0.94784 0.90967 0.84534 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.82 37.16 0.33 -0.81 16 2 C -0.09 -0.81 2.22 -90.58 -0.20 -1.02 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -1.34 5.36 -26.62 -0.14 -1.48 16 5 C 0.05 0.60 6.26 -3.72 -0.02 0.58 16 6 N -0.59 -8.61 2.97 -173.01 -0.51 -9.13 16 7 C 0.51 9.10 7.74 -11.59 -0.09 9.01 16 8 O -0.52 -10.31 15.94 5.49 0.09 -10.23 16 9 C 0.50 9.75 7.77 -11.58 -0.09 9.66 16 10 O -0.53 -10.75 13.11 5.50 0.07 -10.68 16 11 N -0.67 -13.85 5.43 -60.73 -0.33 -14.18 16 12 C 0.14 3.18 5.41 -4.04 -0.02 3.16 16 13 C 0.04 0.88 1.78 -155.66 -0.28 0.60 16 14 C -0.50 -12.93 9.00 -34.44 -0.31 -13.24 16 15 H 0.06 1.67 7.87 -52.49 -0.41 1.26 16 16 C 0.07 1.89 5.10 -17.82 -0.09 1.80 16 17 N -0.87 -23.56 10.99 55.43 0.61 -22.95 16 18 Si 0.89 20.54 29.57 -169.99 -5.03 15.51 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.19 -4.14 9.88 -26.73 -0.26 -4.41 16 23 C -0.21 -4.32 9.68 -26.73 -0.26 -4.58 16 24 C 0.12 1.52 5.54 -3.48 -0.02 1.50 16 25 C -0.09 -0.94 2.04 -90.28 -0.18 -1.12 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 C 0.07 0.53 5.93 -3.83 -0.02 0.50 16 28 N -0.85 -6.92 9.21 -10.37 -0.10 -7.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 6.29 -51.93 -0.33 0.04 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.16 2.55 3.79 -56.72 -0.21 2.33 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.41 8.37 7.83 -40.82 -0.32 8.05 16 37 H 0.13 3.33 5.30 -51.93 -0.28 3.06 16 38 H 0.04 0.99 7.89 -51.93 -0.41 0.58 16 39 H 0.27 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 41 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 1.49 6.85 -51.93 -0.36 1.13 16 46 H 0.03 0.24 6.14 -51.93 -0.32 -0.08 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.34 2.70 8.99 -39.29 -0.35 2.35 16 49 H 0.34 2.11 9.08 -39.29 -0.36 1.76 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -28.10 385.18 -9.03 -37.13 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -7.97 Total: 15.58 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.67 Total: 0.16 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.33 Total: -53.27 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.16 Total: -20.91 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.10 -9.03 -37.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418821942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.938 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds