Wall clock time and date at job start Fri Apr 10 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 120.00120 * 2 1 4 4 H 1.48498 * 109.47135 * 269.99794 * 3 2 1 5 5 H 1.48507 * 109.47012 * 29.99569 * 3 2 1 6 6 H 1.48502 * 109.47037 * 149.99327 * 3 2 1 7 7 C 1.38810 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99515 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99800 * 179.97438 * 9 7 2 11 11 C 1.53123 * 109.57501 * 85.29929 * 10 9 7 12 12 C 1.53034 * 109.27992 * 177.60191 * 11 10 9 13 13 N 1.46847 * 109.51345 * 300.80438 * 12 11 10 14 14 C 1.46895 * 110.99982 * 185.84805 * 13 12 11 15 15 C 1.53000 * 109.47597 * 189.99795 * 14 13 12 16 16 N 1.46494 * 109.47874 * 179.97438 * 15 14 13 17 17 C 1.34774 * 120.00605 * 180.02562 * 16 15 14 18 18 O 1.21289 * 119.99398 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00358 * 179.97438 * 17 16 15 20 20 C 1.52991 * 119.81114 * 248.97418 * 19 17 16 21 21 C 1.54514 * 122.36630 * 176.59052 * 19 17 16 22 22 H 1.08998 * 122.36340 * 359.45868 * 21 19 17 23 23 C 1.54478 * 104.06527 * 223.22166 * 21 19 17 24 24 O 1.44426 * 104.80289 * 336.02444 * 23 21 19 25 25 C 1.44421 * 105.27494 * 40.50920 * 24 23 21 26 26 C 1.46843 * 111.20124 * 61.74903 * 13 12 11 27 27 C 1.53042 * 109.52278 * 298.25596 * 26 13 12 28 28 H 0.97002 * 119.99633 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00060 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.52476 * 325.13035 * 10 9 7 31 31 H 1.08997 * 109.51083 * 57.64785 * 11 10 9 32 32 H 1.08998 * 109.48980 * 297.53716 * 11 10 9 33 33 H 1.09002 * 109.46271 * 180.79158 * 12 11 10 34 34 H 1.08994 * 109.46242 * 60.81457 * 12 11 10 35 35 H 1.08997 * 109.47358 * 309.99752 * 14 13 12 36 36 H 1.09001 * 109.47788 * 69.99563 * 14 13 12 37 37 H 1.09007 * 109.46763 * 300.00403 * 15 14 13 38 38 H 1.09001 * 109.46741 * 59.99127 * 15 14 13 39 39 H 0.97002 * 119.99320 * 359.97438 * 16 15 14 40 40 H 1.09003 * 117.43078 * 355.36728 * 20 19 17 41 41 H 1.09001 * 117.43859 * 140.01279 * 20 19 17 42 42 H 1.08996 * 110.37073 * 217.19755 * 23 21 19 43 43 H 1.08996 * 110.46315 * 94.90358 * 23 21 19 44 44 H 1.09004 * 110.37462 * 200.65616 * 25 24 23 45 45 H 1.09007 * 110.37226 * 78.32011 * 25 24 23 46 46 H 1.08993 * 109.46313 * 58.27251 * 26 13 12 47 47 H 1.09000 * 109.46480 * 178.25361 * 26 13 12 48 48 H 1.08997 * 109.50758 * 179.11703 * 27 26 13 49 49 H 1.08998 * 109.50897 * 299.20258 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 2.4170 -4.0419 1.4384 12 6 3.1289 -5.3966 1.4359 13 7 2.2489 -6.4120 0.8435 14 6 2.8437 -7.7509 0.9502 15 6 2.0297 -8.7389 0.1122 16 7 2.6232 -10.0741 0.2180 17 6 2.0707 -11.1115 -0.4416 18 8 1.0818 -10.9396 -1.1225 19 6 2.6816 -12.4847 -0.3332 20 6 3.3704 -13.1089 -1.5483 21 6 2.0503 -13.7261 -1.0026 22 1 1.1271 -13.6717 -1.5794 23 6 2.1538 -14.8275 0.0756 24 8 3.2460 -14.4116 0.9242 25 6 3.0917 -12.9831 1.0703 26 6 1.9287 -6.0881 -0.5525 27 6 1.1812 -4.7539 -0.6094 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.9702 -3.5508 -0.5868 31 1 1.5073 -4.1098 2.0350 32 1 3.0761 -3.2852 1.8639 33 1 3.3733 -5.6803 2.4596 34 1 4.0454 -5.3241 0.8505 35 1 3.8698 -7.7230 0.5837 36 1 2.8389 -8.0688 1.9928 37 1 1.0035 -8.7669 0.4787 38 1 2.0345 -8.4211 -0.9305 39 1 3.4143 -10.2114 0.7623 40 1 3.3268 -12.5583 -2.4880 41 1 4.2912 -13.6652 -1.3730 42 1 2.3766 -15.7898 -0.3852 43 1 1.2290 -14.8872 0.6493 44 1 4.0349 -12.5286 1.3737 45 1 2.3103 -12.7581 1.7963 46 1 2.8510 -6.0126 -1.1285 47 1 1.3013 -6.8740 -0.9730 48 1 0.9575 -4.5060 -1.6470 49 1 0.2517 -4.8331 -0.0456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754848763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:05 Heat of formation + Delta-G solvation = -27.215751 kcal Electronic energy + Delta-G solvation = -27067.272440 eV Core-core repulsion = 23223.697777 eV Total energy + Delta-G solvation = -3843.574663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29269 -39.47348 -38.74909 -35.90929 -34.78779 -34.47117 -32.32121 -30.67300 -30.12510 -29.33602 -27.69478 -26.36377 -24.76122 -23.48041 -23.02714 -22.11440 -21.31722 -21.01300 -19.97176 -19.31758 -18.08605 -17.05647 -16.78460 -16.38316 -16.03448 -15.81417 -15.45152 -15.39657 -14.71095 -14.59428 -14.56002 -14.02808 -13.79160 -13.48474 -13.38417 -13.29538 -13.24365 -12.99745 -12.55298 -12.36967 -12.04266 -11.93482 -11.69246 -11.52003 -11.20220 -11.10052 -10.87867 -10.76915 -10.72077 -10.57407 -10.25897 -10.20144 -10.18178 -10.14020 -9.72302 -9.58568 -9.38351 -8.86151 -8.26183 -6.93020 -5.74631 -3.03172 2.07361 2.59650 2.92719 3.27772 3.43811 3.48741 3.50614 3.87402 3.95130 4.02562 4.25032 4.31715 4.54051 4.59810 4.66065 4.82600 4.85447 5.00977 5.07042 5.12229 5.16880 5.19302 5.21399 5.24370 5.34906 5.40774 5.53209 5.57220 5.59712 5.65619 5.71871 5.75915 5.86681 6.00724 6.05310 6.08941 6.16186 6.27967 6.49065 6.51320 6.65521 6.88587 7.05902 7.08865 7.21785 7.24480 7.70898 7.82000 8.44113 9.55045 10.14075 10.48948 11.48047 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.042205 B = 0.001805 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.274227 B =15509.267375 C =15792.333227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.132 4.132 12 C 0.061 3.939 13 N -0.531 5.531 14 C 0.046 3.954 15 C 0.113 3.887 16 N -0.722 5.722 17 C 0.561 3.439 18 O -0.532 6.532 19 C -0.217 4.217 20 C -0.102 4.102 21 C -0.163 4.163 22 H 0.135 0.865 23 C 0.069 3.931 24 O -0.368 6.368 25 C 0.084 3.916 26 C 0.053 3.947 27 C -0.121 4.121 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.400 0.600 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.031 0.969 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.194 -30.239 1.226 31.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.173 4.173 12 C -0.067 4.067 13 N -0.257 5.257 14 C -0.083 4.083 15 C -0.010 4.010 16 N -0.374 5.374 17 C 0.346 3.654 18 O -0.408 6.408 19 C -0.220 4.220 20 C -0.140 4.140 21 C -0.182 4.182 22 H 0.153 0.847 23 C -0.007 4.007 24 O -0.286 6.286 25 C 0.007 3.993 26 C -0.076 4.076 27 C -0.160 4.160 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.299 -30.048 1.106 30.941 hybrid contribution 1.083 1.200 -0.164 1.624 sum 8.381 -28.848 0.942 30.056 Atomic orbital electron populations 1.69665 1.05078 1.25582 1.57765 1.24742 0.95508 0.97646 1.03159 0.86211 0.78628 0.83999 0.77473 1.21790 1.21790 1.20836 1.19236 0.90922 0.84201 1.42537 0.91310 1.42423 1.05810 0.99710 1.88508 1.20236 0.94173 0.86142 0.92718 1.22314 1.00530 0.93194 1.01244 1.22142 0.93512 0.92609 0.98420 1.61991 1.44551 1.00593 1.18528 1.22220 0.95957 0.89765 1.00358 1.21609 0.98152 0.80226 1.01018 1.45862 1.32126 1.08671 1.50745 1.18996 0.83172 0.84098 0.79143 1.90747 1.25346 1.84643 1.40108 1.23206 1.09200 0.93390 0.96216 1.23322 0.95955 0.99804 0.94872 1.24625 0.99668 0.92406 1.01490 0.84674 1.23029 0.90875 0.97520 0.89324 1.89184 1.48692 1.20922 1.69813 1.22832 1.02361 0.81583 0.92534 1.22239 0.99015 0.98444 0.87855 1.21865 0.99630 0.93143 1.01362 0.93545 0.78221 0.94111 0.91636 0.91670 0.91509 0.95246 0.94457 0.90224 0.90173 0.90718 0.76561 0.87068 0.87256 0.88007 0.90789 0.88176 0.90819 0.95043 0.90603 0.91488 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -18.28 5.13 -53.30 -0.27 -18.55 16 10 C 0.18 3.54 2.84 -67.80 -0.19 3.34 16 11 C -0.13 -2.35 5.68 -26.65 -0.15 -2.50 16 12 C 0.06 0.85 5.42 -3.84 -0.02 0.83 16 13 N -0.53 -6.88 4.80 -234.68 -1.13 -8.01 16 14 C 0.05 0.44 5.39 -3.83 -0.02 0.42 16 15 C 0.11 1.12 4.92 -4.04 -0.02 1.10 16 16 N -0.72 -5.83 5.51 -60.30 -0.33 -6.17 16 17 C 0.56 5.62 7.51 -10.99 -0.08 5.54 16 18 O -0.53 -7.57 16.85 5.55 0.09 -7.47 16 19 C -0.22 -1.60 2.81 -154.10 -0.43 -2.03 16 20 C -0.10 -0.65 9.84 -25.35 -0.25 -0.90 16 21 C -0.16 -1.12 7.04 -87.66 -0.62 -1.73 16 22 H 0.14 0.99 8.14 -51.93 -0.42 0.56 16 23 C 0.07 0.40 7.54 37.93 0.29 0.69 16 24 O -0.37 -2.77 11.32 -35.23 -0.40 -3.17 16 25 C 0.08 0.51 6.97 37.93 0.26 0.78 16 26 C 0.05 0.72 4.85 -3.83 -0.02 0.70 16 27 C -0.12 -2.06 5.57 -26.64 -0.15 -2.20 16 28 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 30 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.07 0.83 6.21 -51.93 -0.32 0.51 16 39 H 0.40 2.10 8.24 -40.82 -0.34 1.76 16 40 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.11 0.58 8.07 -51.93 -0.42 0.16 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.96 5.81 -51.93 -0.30 0.66 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -33.31 389.91 -10.54 -43.84 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.42 Total: 7.11 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.65 Total: -3.26 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -1.01 Total: -60.38 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.31 Total: -10.64 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.31 -10.54 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754848763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.626 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds