Wall clock time and date at job start Fri Apr 10 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47190 * 2 1 4 4 C 1.50702 * 120.00172 * 274.99807 * 3 2 1 5 5 C 1.32998 * 120.00361 * 94.99408 * 3 2 1 6 6 C 1.47097 * 120.00258 * 185.64221 * 5 3 2 7 7 O 1.21609 * 119.99920 * 5.65931 * 6 5 3 8 8 N 1.34782 * 119.99725 * 185.65015 * 6 5 3 9 9 C 1.47426 * 125.65022 * 359.70076 * 8 6 5 10 10 C 1.55123 * 104.72165 * 155.81434 * 9 8 6 11 11 H 1.09002 * 111.19383 * 279.19225 * 10 9 8 12 12 C 1.52999 * 110.93959 * 155.29003 * 10 9 8 13 13 C 1.55161 * 101.48809 * 37.29109 * 10 9 8 14 14 H 1.08998 * 110.71981 * 205.96745 * 13 10 9 15 15 N 1.46899 * 110.71499 * 82.69833 * 13 10 9 16 16 C 1.46905 * 111.00059 * 160.02604 * 15 13 10 17 17 C 1.50693 * 109.47357 * 179.97438 * 16 15 13 18 18 O 1.21296 * 120.00240 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99824 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99749 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00111 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99939 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99819 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99917 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47096 * 89.99596 * 24 22 20 26 26 H 1.48501 * 109.46903 * 209.99704 * 24 22 20 27 27 H 1.48501 * 109.47163 * 329.99886 * 24 22 20 28 28 C 1.47022 * 125.64340 * 179.97438 * 8 6 5 29 29 H 1.08997 * 109.47143 * 300.00276 * 1 2 3 30 30 H 1.09002 * 109.46959 * 60.00530 * 1 2 3 31 31 H 1.09003 * 109.46875 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47143 * 239.99723 * 2 1 3 33 33 H 1.08997 * 109.47026 * 119.99959 * 2 1 3 34 34 H 1.08998 * 109.46643 * 354.80766 * 4 3 2 35 35 H 1.08997 * 109.47272 * 234.80665 * 4 3 2 36 36 H 1.08998 * 109.47370 * 114.80343 * 4 3 2 37 37 H 1.08000 * 119.99341 * 5.64989 * 5 3 2 38 38 H 1.09001 * 110.36419 * 274.74216 * 9 8 6 39 39 H 1.08998 * 110.36603 * 37.06085 * 9 8 6 40 40 H 1.09001 * 109.46555 * 307.95413 * 12 10 9 41 41 H 1.08998 * 109.46971 * 67.95618 * 12 10 9 42 42 H 1.08996 * 109.47183 * 187.95826 * 12 10 9 43 43 H 1.00907 * 110.99798 * 283.97563 * 15 13 10 44 44 H 1.09003 * 109.46489 * 299.99846 * 16 15 13 45 45 H 1.09001 * 109.46694 * 59.99316 * 16 15 13 46 46 H 0.96993 * 120.00384 * 0.02562 * 19 17 16 47 47 H 0.97006 * 119.99895 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.88958 * 300.44625 * 28 8 6 49 49 H 1.09003 * 109.88122 * 61.61248 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1763 2.1691 -1.3001 5 6 2.3486 2.0144 1.1474 6 6 2.7197 3.4377 1.1613 7 8 2.6385 4.0972 0.1429 8 7 3.1497 4.0108 2.3030 9 6 3.2894 3.3333 3.6049 10 6 4.3494 4.1671 4.3713 11 1 5.3598 3.9016 4.0603 12 6 4.1839 4.0047 5.8836 13 6 3.9909 5.6090 3.9242 14 1 4.8637 6.2592 3.9830 15 7 2.8868 6.1441 4.7321 16 6 2.8476 7.6111 4.6640 17 6 1.7046 8.1224 5.5024 18 8 0.9923 7.3417 6.0977 19 7 1.4738 9.4474 5.5908 20 6 0.4342 9.9126 6.3540 21 1 -0.1995 9.2175 6.8847 22 6 0.1966 11.2786 6.4455 23 7 -0.8001 11.7245 7.1767 24 14 1.2930 12.4810 5.5282 25 1 0.7346 12.7262 4.1742 26 1 1.3577 13.7620 6.2765 27 1 2.6585 11.9104 5.4045 28 6 3.5516 5.4166 2.4574 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9609 1.4979 -2.1314 35 1 3.1951 2.5457 -1.3917 36 1 1.4771 3.0051 -1.3176 37 1 2.3329 1.4513 2.0688 38 1 2.3396 3.3394 4.1395 39 1 3.6403 2.3109 3.4647 40 1 3.1494 4.2091 6.1598 41 1 4.4417 2.9851 6.1699 42 1 4.8424 4.7042 6.3984 43 1 2.0045 5.7452 4.4480 44 1 3.7859 8.0174 5.0416 45 1 2.7068 7.9231 3.6292 46 1 2.0431 10.0717 5.1145 47 1 -0.9663 12.6781 7.2403 48 1 4.3829 5.6401 1.7889 49 1 2.7080 6.0699 2.2345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755108892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:07 Heat of formation + Delta-G solvation = -78.199815 kcal Electronic energy + Delta-G solvation = -27455.358080 eV Core-core repulsion = 23609.572582 eV Total energy + Delta-G solvation = -3845.785498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40460 -40.31745 -39.35065 -37.03791 -36.15873 -35.42386 -33.76879 -33.34196 -31.93871 -30.49905 -28.81052 -27.77241 -27.17394 -25.66467 -24.94952 -23.56806 -21.35805 -21.16606 -20.76403 -20.31212 -19.05372 -18.28847 -17.71903 -17.32835 -16.94279 -16.65071 -16.27718 -15.88158 -15.63318 -15.43481 -15.06481 -15.03063 -14.89631 -14.57133 -14.44865 -14.13859 -13.95207 -13.92737 -13.62209 -13.42772 -13.27511 -13.18183 -13.06087 -12.90207 -12.79824 -12.61130 -12.42415 -12.30350 -12.17027 -11.99413 -11.78354 -11.68290 -11.54125 -11.52417 -10.67275 -10.44043 -10.25810 -10.23318 -9.63456 -9.33943 -8.42272 -6.02976 0.35525 1.29168 1.34488 1.43320 1.94724 2.00765 2.21889 2.24366 2.67852 3.14249 3.28688 3.48316 3.51854 3.74868 3.85973 4.02789 4.12466 4.16111 4.25327 4.30551 4.34869 4.41321 4.42534 4.55609 4.57257 4.63164 4.67641 4.73216 4.75803 4.79396 4.81926 4.96922 4.99957 5.06260 5.08222 5.22701 5.27506 5.30910 5.34025 5.51786 5.53369 5.60455 5.71785 5.89233 6.02110 6.26686 6.50900 6.58524 6.87186 7.14364 7.38884 7.95295 8.75344 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.002458 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.657201 B =11388.687236 C =11912.786273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.023 4.023 4 C -0.114 4.114 5 C -0.242 4.242 6 C 0.548 3.452 7 O -0.584 6.584 8 N -0.615 5.615 9 C 0.100 3.900 10 C -0.082 4.082 11 H 0.108 0.892 12 C -0.122 4.122 13 C 0.083 3.917 14 H 0.122 0.878 15 N -0.659 5.659 16 C 0.059 3.941 17 C 0.449 3.551 18 O -0.613 6.613 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.055 0.945 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.260 1.260 26 H -0.274 1.274 27 H -0.229 1.229 28 C 0.078 3.922 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.148 0.852 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.341 0.659 44 H 0.122 0.878 45 H 0.070 0.930 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.076 0.924 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.116 -22.078 -14.865 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.025 4.025 4 C -0.171 4.171 5 C -0.262 4.262 6 C 0.342 3.658 7 O -0.467 6.467 8 N -0.348 5.348 9 C -0.022 4.022 10 C -0.101 4.101 11 H 0.127 0.873 12 C -0.180 4.180 13 C -0.028 4.028 14 H 0.140 0.860 15 N -0.290 5.290 16 C -0.073 4.073 17 C 0.237 3.763 18 O -0.497 6.497 19 N -0.234 5.234 20 C -0.457 4.457 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.153 1.153 28 C -0.047 4.047 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.160 0.840 44 H 0.140 0.860 45 H 0.087 0.913 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.801 -22.124 -14.361 30.245 hybrid contribution -0.650 1.558 -0.903 1.914 sum 14.151 -20.567 -15.263 29.261 Atomic orbital electron populations 1.21727 0.93895 1.02982 1.01888 1.20823 0.96570 0.90653 1.04810 1.22865 0.88382 0.96644 0.94567 1.20954 1.02252 0.99372 0.94485 1.22448 1.10580 0.92720 1.00455 1.18826 0.76553 0.88993 0.81451 1.90755 1.56136 1.66440 1.33416 1.48447 1.64988 1.11383 1.09964 1.22692 0.99639 0.97947 0.81956 1.22429 0.99122 0.92123 0.96456 0.87343 1.21411 1.02296 1.01301 0.92942 1.22831 0.94858 0.98149 0.86980 0.86043 1.60178 1.07795 1.03875 1.57164 1.21703 0.97527 0.89906 0.98164 1.20962 0.88030 0.81944 0.85342 1.90546 1.52158 1.56484 1.50499 1.42044 1.29176 1.06760 1.45405 1.19000 1.07953 0.92583 1.26130 0.92642 1.26117 0.98575 0.98764 0.97997 1.69804 1.31144 1.15839 1.40708 0.85376 0.79682 0.77912 0.78633 1.18480 1.19939 1.15263 1.22759 0.99609 0.82848 0.99488 0.93296 0.92854 0.90282 0.88929 0.89200 0.90609 0.91936 0.92000 0.83474 0.91689 0.88110 0.93366 0.91601 0.92551 0.84022 0.86004 0.91252 0.77513 0.91159 0.90610 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.09 -0.93 6.04 29.85 0.18 -0.75 16 3 C -0.02 -0.38 5.36 -17.62 -0.09 -0.47 16 4 C -0.11 -2.21 8.34 71.24 0.59 -1.62 16 5 C -0.24 -4.55 9.02 23.43 0.21 -4.34 16 6 C 0.55 14.09 7.72 86.57 0.67 14.75 16 7 O -0.58 -19.05 13.53 -4.06 -0.05 -19.10 16 8 N -0.62 -13.71 3.33 -815.63 -2.71 -16.42 16 9 C 0.10 1.67 5.86 86.93 0.51 2.18 16 10 C -0.08 -1.27 3.57 -9.33 -0.03 -1.30 16 11 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 12 C -0.12 -2.14 8.86 71.98 0.64 -1.50 16 13 C 0.08 1.58 3.02 46.10 0.14 1.72 16 14 H 0.12 1.85 7.90 -2.39 -0.02 1.83 16 15 N -0.66 -18.00 4.52 -489.44 -2.21 -20.21 16 16 C 0.06 1.74 5.99 85.55 0.51 2.26 16 17 C 0.45 20.11 7.82 87.65 0.69 20.79 16 18 O -0.61 -33.68 15.78 -3.08 -0.05 -33.73 16 19 N -0.59 -27.99 5.09 -306.98 -1.56 -29.55 16 20 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 21 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 22 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 23 N -0.93 -56.78 13.96 21.66 0.30 -56.47 16 24 Si 0.96 39.16 27.74 68.60 1.90 41.07 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 28 C 0.08 1.73 6.32 86.73 0.55 2.28 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.68 8.11 -2.39 -0.02 0.67 16 33 H 0.09 0.68 7.99 -2.39 -0.02 0.66 16 34 H 0.08 1.05 7.98 -2.39 -0.02 1.03 16 35 H 0.06 1.39 7.41 -2.39 -0.02 1.37 16 36 H 0.06 1.52 7.09 -2.39 -0.02 1.50 16 37 H 0.15 2.02 6.89 -2.91 -0.02 2.00 16 38 H 0.06 1.25 7.99 -2.39 -0.02 1.23 16 39 H 0.10 1.19 7.22 -2.39 -0.02 1.17 16 40 H 0.05 1.14 7.36 -2.39 -0.02 1.12 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.34 10.80 8.11 -89.69 -0.73 10.07 16 44 H 0.12 2.89 8.09 -2.39 -0.02 2.87 16 45 H 0.07 1.77 7.82 -2.39 -0.02 1.76 16 46 H 0.39 15.25 5.76 -92.71 -0.53 14.71 16 47 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.04 1.21 7.69 -2.39 -0.02 1.19 16 Total: -1.00 -80.62 394.25 1.84 -78.78 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -0.37 Total: 41.38 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 6.59 Total: 14.25 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -6.19 Total: -122.65 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -0.10 Total: -52.83 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.07 kcal Total: -80.62 1.84 -78.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755108892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.584 kcal (2) G-P(sol) polarization free energy of solvation -80.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds