Wall clock time and date at job start Fri Apr 10 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.46977 * 2 1 4 4 C 1.50704 * 119.99976 * 272.76504 * 3 2 1 5 5 C 1.32992 * 120.00309 * 92.76787 * 3 2 1 6 6 C 1.47105 * 119.99805 * 352.04945 * 5 3 2 7 7 O 1.21612 * 119.99868 * 353.62152 * 6 5 3 8 8 N 1.34775 * 120.00260 * 173.61904 * 6 5 3 9 9 C 1.47479 * 127.03528 * 179.97438 * 8 6 5 10 10 C 1.53996 * 107.08741 * 205.48150 * 9 8 6 11 11 H 1.08995 * 110.33109 * 239.80884 * 10 9 8 12 12 N 1.46898 * 110.33034 * 117.58654 * 10 9 8 13 13 C 1.46897 * 110.99848 * 86.45476 * 12 10 9 14 14 C 1.50707 * 109.46959 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00153 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99604 * 180.02562 * 14 13 12 17 17 C 1.37095 * 120.00037 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99829 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00523 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00029 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00302 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47415 * 59.99413 * 21 19 17 23 23 H 1.48503 * 109.47206 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46681 * 299.99452 * 21 19 17 25 25 C 1.54626 * 105.04442 * 358.69934 * 10 9 8 26 26 H 1.08999 * 110.74154 * 96.48417 * 25 10 9 27 27 C 1.52998 * 110.73788 * 219.81654 * 25 10 9 28 28 C 1.48120 * 127.03156 * 0.04246 * 8 6 5 29 29 H 1.08996 * 109.46951 * 299.99519 * 1 2 3 30 30 H 1.08994 * 109.47010 * 59.99772 * 1 2 3 31 31 H 1.08995 * 109.46727 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46787 * 240.00317 * 2 1 3 33 33 H 1.08997 * 109.47515 * 120.00216 * 2 1 3 34 34 H 1.08995 * 109.47685 * 270.00290 * 4 3 2 35 35 H 1.09003 * 109.46963 * 30.00377 * 4 3 2 36 36 H 1.09005 * 109.46946 * 150.00236 * 4 3 2 37 37 H 1.07997 * 120.00059 * 172.04461 * 5 3 2 38 38 H 1.09008 * 109.90830 * 86.12379 * 9 8 6 39 39 H 1.09001 * 109.91756 * 324.84629 * 9 8 6 40 40 H 1.00909 * 110.99907 * 322.50648 * 12 10 9 41 41 H 1.09004 * 109.47055 * 299.99951 * 13 12 10 42 42 H 1.08998 * 109.47440 * 60.00170 * 13 12 10 43 43 H 0.97004 * 120.00755 * 359.97438 * 16 14 13 44 44 H 0.97001 * 120.00380 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.47958 * 59.99508 * 27 25 10 46 46 H 1.09000 * 109.46998 * 180.02562 * 27 25 10 47 47 H 1.09001 * 109.47073 * 299.99182 * 27 25 10 48 48 H 1.09003 * 110.66048 * 259.11295 * 28 8 6 49 49 H 1.09002 * 110.66115 * 22.22546 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2241 2.1522 -1.3036 5 6 2.3064 2.0292 1.1504 6 6 1.9566 1.3840 2.4253 7 8 1.3144 0.3513 2.4280 8 7 2.3478 1.9374 3.5902 9 6 2.0846 1.4270 4.9487 10 6 2.1287 2.6353 5.9024 11 1 2.9050 2.4958 6.6546 12 7 0.8218 2.8258 6.5455 13 6 0.7071 2.0046 7.7581 14 6 -0.6438 2.2256 8.3885 15 8 -1.4335 2.9914 7.8777 16 7 -0.9744 1.5722 9.5200 17 6 -2.2035 1.7727 10.0932 18 1 -2.9067 2.4547 9.6384 19 6 -2.5441 1.0995 11.2600 20 7 -1.6884 0.2702 11.8138 21 14 -4.2192 1.3723 12.0407 22 1 -5.2825 0.9847 11.0793 23 1 -4.3348 0.5428 13.2670 24 1 -4.3719 2.8061 12.3962 25 6 2.4653 3.8459 5.0012 26 1 1.5579 4.3763 4.7125 27 6 3.4454 4.7879 5.7033 28 6 3.1289 3.1832 3.7682 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 3.2381 1.9864 -1.6676 35 1 1.5093 1.7801 -2.0376 36 1 2.0636 3.2192 -1.1486 37 1 2.7859 2.9969 1.1486 38 1 2.8514 0.7047 5.2289 39 1 1.1002 0.9605 4.9858 40 1 0.0699 2.6278 5.9023 41 1 0.8176 0.9523 7.4960 42 1 1.4883 2.2873 8.4637 43 1 -0.3430 0.9594 9.9284 44 1 -1.9263 -0.2001 12.6282 45 1 4.3665 4.2511 5.9299 46 1 3.6677 5.6326 5.0512 47 1 2.9997 5.1517 6.6291 48 1 4.1754 2.9554 3.9709 49 1 3.0365 3.8237 2.8911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755108894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:13 Heat of formation + Delta-G solvation = -54.647174 kcal Electronic energy + Delta-G solvation = -27394.360648 eV Core-core repulsion = 23549.596469 eV Total energy + Delta-G solvation = -3844.764178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41986 -38.77599 -37.95615 -35.99740 -34.66315 -33.77279 -32.59532 -31.21040 -31.11200 -29.42987 -27.97501 -26.49111 -26.09437 -24.27163 -23.70530 -22.44175 -20.72156 -20.13198 -19.18825 -18.27294 -17.85111 -17.42214 -16.35343 -16.03005 -15.51237 -15.15601 -14.95216 -14.76826 -14.47378 -14.31866 -14.01301 -13.77685 -13.58776 -13.51235 -13.17310 -13.06105 -12.93860 -12.72518 -12.48435 -12.37423 -12.21531 -12.11399 -12.01652 -11.60037 -11.51933 -11.26985 -11.20464 -11.04516 -11.00619 -10.92659 -10.77228 -10.42776 -10.19670 -9.61125 -9.48566 -9.36332 -8.85059 -8.42253 -8.03513 -7.94253 -6.40029 -3.80833 1.15094 2.84661 3.14858 3.21687 3.27123 3.31719 3.92214 4.06389 4.24069 4.32260 4.38195 4.48862 4.63551 4.84456 4.92575 5.08463 5.09282 5.14277 5.15864 5.17931 5.20571 5.27897 5.28007 5.39833 5.40591 5.46298 5.52173 5.57618 5.61561 5.67926 5.75165 5.79003 5.89229 5.92734 5.99327 6.10045 6.14245 6.16503 6.21548 6.28800 6.33210 6.41788 7.19911 7.45188 7.56669 7.60722 8.07557 8.12297 8.62773 9.19389 9.55747 10.07232 10.77639 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.002416 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.059987 B =11586.154194 C =12722.687400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 C -0.027 4.027 4 C -0.127 4.127 5 C -0.230 4.230 6 C 0.561 3.439 7 O -0.535 6.535 8 N -0.616 5.616 9 C 0.075 3.925 10 C 0.079 3.921 11 H 0.095 0.905 12 N -0.655 5.655 13 C 0.048 3.952 14 C 0.441 3.559 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.095 4.095 26 H 0.092 0.908 27 C -0.137 4.137 28 C 0.102 3.898 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.352 0.648 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.152 3.504 -21.352 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 C -0.029 4.029 4 C -0.183 4.183 5 C -0.251 4.251 6 C 0.354 3.646 7 O -0.414 6.414 8 N -0.350 5.350 9 C -0.050 4.050 10 C -0.033 4.033 11 H 0.113 0.887 12 N -0.287 5.287 13 C -0.085 4.085 14 C 0.226 3.774 15 O -0.467 6.467 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.115 4.115 26 H 0.111 0.889 27 C -0.195 4.195 28 C -0.021 4.021 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.173 0.827 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.391 3.867 -21.233 25.940 hybrid contribution -0.394 -1.113 0.444 1.262 sum 13.996 2.754 -20.789 25.212 Atomic orbital electron populations 1.21527 0.94053 1.01801 1.01547 1.21029 0.97285 0.92496 1.03526 1.22584 0.90126 0.95816 0.94406 1.20994 1.02701 1.00106 0.94516 1.22312 1.08625 1.02450 0.91667 1.18219 0.79338 0.83965 0.83069 1.90747 1.40271 1.23783 1.86648 1.48628 1.54642 1.26264 1.05449 1.22971 1.02339 0.97723 0.81929 1.22668 0.93505 0.92349 0.94754 0.88741 1.60220 1.02591 1.57878 1.08019 1.21740 0.98238 0.95386 0.93088 1.19783 0.88694 0.85227 0.83688 1.90524 1.52294 1.39636 1.64290 1.41853 1.16416 1.39613 1.22106 1.19649 0.92417 1.24610 1.06220 0.87994 1.25261 0.99622 0.96184 0.96876 1.69602 1.35787 1.27941 1.21007 0.85917 0.81680 0.78393 0.78220 1.19916 1.20982 1.19877 1.22298 0.99649 0.95775 0.93753 0.88943 1.21686 0.98159 0.98581 1.01071 1.22723 0.95285 0.85264 0.98844 0.91716 0.93736 0.92641 0.92201 0.87951 0.90510 0.90813 0.91074 0.85721 0.91562 0.90342 0.82688 0.93745 0.89440 0.77451 0.91826 0.92728 0.92585 0.91304 0.90841 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.45 37.16 0.35 -1.06 16 2 C -0.11 -1.09 5.31 -27.88 -0.15 -1.23 16 3 C -0.03 -0.25 5.36 -101.17 -0.54 -0.79 16 4 C -0.13 -0.75 10.04 36.01 0.36 -0.38 16 5 C -0.23 -2.25 9.13 -37.80 -0.35 -2.60 16 6 C 0.56 7.26 7.67 -12.66 -0.10 7.16 16 7 O -0.53 -8.50 12.02 5.27 0.06 -8.43 16 8 N -0.62 -7.15 3.29 -171.17 -0.56 -7.71 16 9 C 0.08 0.93 6.54 -2.99 -0.02 0.91 16 10 C 0.08 0.93 2.88 -66.34 -0.19 0.74 16 11 H 0.09 1.02 7.57 -51.93 -0.39 0.62 16 12 N -0.66 -10.42 5.85 -106.54 -0.62 -11.04 16 13 C 0.05 0.84 6.00 -4.97 -0.03 0.81 16 14 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 15 O -0.58 -16.04 15.78 5.55 0.09 -15.95 16 16 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 17 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 21 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.09 -0.94 3.38 -88.76 -0.30 -1.24 16 26 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 27 C -0.14 -1.14 9.16 37.16 0.34 -0.80 16 28 C 0.10 0.86 6.36 -2.14 -0.01 0.85 16 29 H 0.06 0.85 6.91 -51.93 -0.36 0.49 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 1.30 5.57 -51.93 -0.29 1.01 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 37 H 0.12 0.93 6.64 -52.49 -0.35 0.58 16 38 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.08 1.16 7.54 -51.93 -0.39 0.77 16 40 H 0.35 6.16 7.93 -39.29 -0.31 5.85 16 41 H 0.04 0.71 8.11 -51.93 -0.42 0.29 16 42 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.52 8.02 -51.93 -0.42 0.11 16 49 H 0.08 0.56 6.61 -51.93 -0.34 0.21 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -32.98 396.11 -8.55 -41.53 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -8.16 Total: 13.20 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.96 Total: 4.68 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.52 Total: -57.29 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: 0.15 Total: -24.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.98 -8.55 -41.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755108894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.117 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds