Wall clock time and date at job start Fri Apr 10 2020 18:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.46977 * 2 1 4 4 C 1.50704 * 119.99976 * 272.76504 * 3 2 1 5 5 C 1.32992 * 120.00309 * 92.76787 * 3 2 1 6 6 C 1.47105 * 119.99805 * 352.04945 * 5 3 2 7 7 O 1.21612 * 119.99868 * 353.62152 * 6 5 3 8 8 N 1.34775 * 120.00260 * 173.61904 * 6 5 3 9 9 C 1.47479 * 127.03528 * 179.97438 * 8 6 5 10 10 C 1.53996 * 107.08741 * 205.48150 * 9 8 6 11 11 H 1.08995 * 110.33109 * 239.80884 * 10 9 8 12 12 N 1.46898 * 110.33034 * 117.58654 * 10 9 8 13 13 C 1.46897 * 110.99848 * 86.45476 * 12 10 9 14 14 C 1.50707 * 109.46959 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00153 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99604 * 180.02562 * 14 13 12 17 17 C 1.37095 * 120.00037 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99829 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00523 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00029 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00302 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47415 * 59.99413 * 21 19 17 23 23 H 1.48503 * 109.47206 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46681 * 299.99452 * 21 19 17 25 25 C 1.54626 * 105.04442 * 358.69934 * 10 9 8 26 26 H 1.08999 * 110.74154 * 96.48417 * 25 10 9 27 27 C 1.52998 * 110.73788 * 219.81654 * 25 10 9 28 28 C 1.48120 * 127.03156 * 0.04246 * 8 6 5 29 29 H 1.08996 * 109.46951 * 299.99519 * 1 2 3 30 30 H 1.08994 * 109.47010 * 59.99772 * 1 2 3 31 31 H 1.08995 * 109.46727 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46787 * 240.00317 * 2 1 3 33 33 H 1.08997 * 109.47515 * 120.00216 * 2 1 3 34 34 H 1.08995 * 109.47685 * 270.00290 * 4 3 2 35 35 H 1.09003 * 109.46963 * 30.00377 * 4 3 2 36 36 H 1.09005 * 109.46946 * 150.00236 * 4 3 2 37 37 H 1.07997 * 120.00059 * 172.04461 * 5 3 2 38 38 H 1.09008 * 109.90830 * 86.12379 * 9 8 6 39 39 H 1.09001 * 109.91756 * 324.84629 * 9 8 6 40 40 H 1.00909 * 110.99907 * 322.50648 * 12 10 9 41 41 H 1.09004 * 109.47055 * 299.99951 * 13 12 10 42 42 H 1.08998 * 109.47440 * 60.00170 * 13 12 10 43 43 H 0.97004 * 120.00755 * 359.97438 * 16 14 13 44 44 H 0.97001 * 120.00380 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.47958 * 59.99508 * 27 25 10 46 46 H 1.09000 * 109.46998 * 180.02562 * 27 25 10 47 47 H 1.09001 * 109.47073 * 299.99182 * 27 25 10 48 48 H 1.09003 * 110.66048 * 259.11295 * 28 8 6 49 49 H 1.09002 * 110.66115 * 22.22546 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2241 2.1522 -1.3036 5 6 2.3064 2.0292 1.1504 6 6 1.9566 1.3840 2.4253 7 8 1.3144 0.3513 2.4280 8 7 2.3478 1.9374 3.5902 9 6 2.0846 1.4270 4.9487 10 6 2.1287 2.6353 5.9024 11 1 2.9050 2.4958 6.6546 12 7 0.8218 2.8258 6.5455 13 6 0.7071 2.0046 7.7581 14 6 -0.6438 2.2256 8.3885 15 8 -1.4335 2.9914 7.8777 16 7 -0.9744 1.5722 9.5200 17 6 -2.2035 1.7727 10.0932 18 1 -2.9067 2.4547 9.6384 19 6 -2.5441 1.0995 11.2600 20 7 -1.6884 0.2702 11.8138 21 14 -4.2192 1.3723 12.0407 22 1 -5.2825 0.9847 11.0793 23 1 -4.3348 0.5428 13.2670 24 1 -4.3719 2.8061 12.3962 25 6 2.4653 3.8459 5.0012 26 1 1.5579 4.3763 4.7125 27 6 3.4454 4.7879 5.7033 28 6 3.1289 3.1832 3.7682 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 3.2381 1.9864 -1.6676 35 1 1.5093 1.7801 -2.0376 36 1 2.0636 3.2192 -1.1486 37 1 2.7859 2.9969 1.1486 38 1 2.8514 0.7047 5.2289 39 1 1.1002 0.9605 4.9858 40 1 0.0699 2.6278 5.9023 41 1 0.8176 0.9523 7.4960 42 1 1.4883 2.2873 8.4637 43 1 -0.3430 0.9594 9.9284 44 1 -1.9263 -0.2001 12.6282 45 1 4.3665 4.2511 5.9299 46 1 3.6677 5.6326 5.0512 47 1 2.9997 5.1517 6.6291 48 1 4.1754 2.9554 3.9709 49 1 3.0365 3.8237 2.8911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755108894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:12 Heat of formation + Delta-G solvation = -77.729273 kcal Electronic energy + Delta-G solvation = -27395.361563 eV Core-core repulsion = 23549.596469 eV Total energy + Delta-G solvation = -3845.765093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34987 -40.22627 -39.35299 -36.80866 -36.18555 -35.51806 -33.52385 -33.24788 -31.91686 -30.40513 -28.89708 -27.58933 -27.18047 -25.88077 -24.62371 -23.44462 -21.64214 -21.12213 -20.89074 -19.92317 -19.07010 -18.33049 -17.73316 -17.26924 -16.75017 -16.39896 -16.30177 -16.08023 -15.74863 -15.57720 -15.27213 -15.03028 -14.69508 -14.37418 -14.15092 -13.91196 -13.81200 -13.74508 -13.51279 -13.46991 -13.32697 -13.19145 -13.01259 -12.92265 -12.85725 -12.76087 -12.45675 -12.14393 -12.06637 -12.01881 -11.88654 -11.77587 -11.59384 -11.52630 -10.55600 -10.37956 -10.12656 -10.04206 -9.76634 -9.25093 -8.48460 -5.97513 0.39257 1.38227 1.39943 1.51154 1.98096 2.03197 2.26097 2.28030 2.86754 3.18370 3.37339 3.55247 3.56828 3.80893 3.85155 4.08536 4.12227 4.16347 4.29406 4.36416 4.41610 4.46218 4.48098 4.54209 4.55139 4.62145 4.64179 4.71001 4.72913 4.81540 4.84071 4.90148 4.96051 5.05986 5.14138 5.16660 5.31567 5.35278 5.36984 5.38905 5.49351 5.52462 5.70530 5.88321 6.08408 6.23940 6.57561 6.58607 7.10178 7.19477 7.53414 8.08865 8.68692 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.002416 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.059987 B =11586.154194 C =12722.687400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 C -0.022 4.022 4 C -0.123 4.123 5 C -0.242 4.242 6 C 0.547 3.453 7 O -0.578 6.578 8 N -0.620 5.620 9 C 0.078 3.922 10 C 0.082 3.918 11 H 0.114 0.886 12 N -0.665 5.665 13 C 0.063 3.937 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.336 4.336 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.919 5.919 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.090 4.090 26 H 0.071 0.929 27 C -0.131 4.131 28 C 0.106 3.894 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.339 0.661 41 H 0.061 0.939 42 H 0.113 0.887 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.048 0.952 48 H 0.098 0.902 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.200 4.447 -22.586 28.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C -0.024 4.024 4 C -0.179 4.179 5 C -0.262 4.262 6 C 0.342 3.658 7 O -0.461 6.461 8 N -0.352 5.352 9 C -0.048 4.048 10 C -0.029 4.029 11 H 0.132 0.868 12 N -0.296 5.296 13 C -0.069 4.069 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.209 5.209 17 C -0.465 4.465 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.560 5.560 21 Si 0.817 3.183 22 H -0.199 1.199 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.110 4.110 26 H 0.090 0.910 27 C -0.189 4.189 28 C -0.016 4.016 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.171 0.829 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.158 0.842 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.116 0.884 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.495 4.824 -22.457 28.278 hybrid contribution -1.021 -1.434 0.777 1.924 sum 15.474 3.390 -21.680 26.851 Atomic orbital electron populations 1.21472 0.94731 1.01484 1.00870 1.20982 0.96719 0.93777 1.03103 1.22875 0.88556 0.95069 0.95853 1.21055 1.03991 1.00293 0.92576 1.22412 1.10003 1.03604 0.90178 1.18908 0.78856 0.83715 0.84370 1.90734 1.42234 1.25778 1.87356 1.48761 1.54603 1.27121 1.04749 1.22855 1.00832 0.98058 0.83030 1.22813 0.91680 0.93225 0.95164 0.86849 1.60279 1.04073 1.57660 1.07584 1.21613 0.94604 0.96757 0.93921 1.20884 0.90499 0.83534 0.82698 1.90489 1.54303 1.41175 1.65173 1.41925 1.15964 1.40201 1.22856 1.19621 0.93553 1.25746 1.07596 0.90434 1.26055 1.03125 0.95435 0.96672 1.69662 1.37147 1.27938 1.21267 0.84989 0.77192 0.78530 0.77618 1.19861 1.19321 1.19561 1.22263 0.99539 0.95114 0.94116 0.91008 1.21647 0.98071 0.98899 1.00274 1.22920 0.95720 0.83963 0.98948 0.94876 0.91691 0.92898 0.90039 0.90880 0.88644 0.90066 0.89882 0.82884 0.90577 0.93671 0.84211 0.92098 0.86918 0.76922 0.91231 0.90893 0.90806 0.93241 0.88406 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.45 71.98 0.68 -2.13 16 2 C -0.11 -2.19 5.31 29.85 0.16 -2.03 16 3 C -0.02 -0.35 5.36 -17.62 -0.09 -0.45 16 4 C -0.12 -1.04 10.04 71.24 0.72 -0.33 16 5 C -0.24 -4.38 9.13 23.43 0.21 -4.16 16 6 C 0.55 14.27 7.67 86.57 0.66 14.93 16 7 O -0.58 -19.50 12.02 -4.07 -0.05 -19.55 16 8 N -0.62 -14.00 3.29 -813.71 -2.68 -16.68 16 9 C 0.08 1.92 6.54 86.53 0.57 2.48 16 10 C 0.08 1.86 2.88 45.81 0.13 1.99 16 11 H 0.11 2.17 7.57 -2.39 -0.02 2.15 16 12 N -0.67 -21.38 5.85 -490.98 -2.87 -24.25 16 13 C 0.06 2.21 6.00 85.56 0.51 2.72 16 14 C 0.44 21.38 7.82 87.66 0.69 22.07 16 15 O -0.62 -35.78 15.78 -3.04 -0.05 -35.83 16 16 N -0.57 -30.13 5.29 -306.99 -1.62 -31.75 16 17 C -0.34 -19.53 9.68 84.04 0.81 -18.71 16 18 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.92 -50.40 13.05 21.66 0.28 -50.12 16 21 Si 0.99 43.79 29.55 68.60 2.03 45.81 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C -0.09 -1.63 3.38 -9.59 -0.03 -1.67 16 26 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 27 C -0.13 -1.83 9.16 71.98 0.66 -1.17 16 28 C 0.11 1.52 6.36 86.72 0.55 2.07 16 29 H 0.03 0.92 6.91 -2.39 -0.02 0.91 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.95 5.57 -2.39 -0.01 1.93 16 34 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.60 8.12 -2.39 -0.02 0.58 16 36 H 0.08 0.55 8.07 -2.38 -0.02 0.53 16 37 H 0.15 1.78 6.64 -2.91 -0.02 1.76 16 38 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.04 1.42 7.54 -2.39 -0.02 1.40 16 40 H 0.34 12.44 7.93 -89.69 -0.71 11.73 16 41 H 0.06 1.94 8.11 -2.38 -0.02 1.93 16 42 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 43 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 44 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.10 1.00 8.02 -2.39 -0.02 0.98 16 49 H 0.10 1.05 6.61 -2.39 -0.02 1.04 16 Total: -1.00 -75.67 396.11 1.25 -74.41 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.49 Total: 42.57 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.69 Total: 15.38 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -6.89 Total: -122.80 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -0.10 Total: -55.38 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.67 1.25 -74.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755108894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.315 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds