Wall clock time and date at job start Fri Apr 10 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 109.47312 * 2 1 4 4 C 1.50704 * 119.99417 * 274.99676 * 3 2 1 5 5 C 1.32993 * 120.00562 * 95.00086 * 3 2 1 6 6 C 1.47100 * 120.00347 * 172.83834 * 5 3 2 7 7 O 1.21612 * 119.99731 * 354.00989 * 6 5 3 8 8 N 1.34776 * 119.99813 * 174.00642 * 6 5 3 9 9 C 1.48147 * 127.83328 * 180.02562 * 8 6 5 10 10 C 1.54390 * 104.61498 * 219.58497 * 9 8 6 11 11 H 1.08997 * 110.43704 * 217.21743 * 10 9 8 12 12 N 1.46897 * 110.34527 * 95.00083 * 10 9 8 13 13 C 1.46903 * 110.99890 * 89.46205 * 12 10 9 14 14 C 1.50696 * 109.47160 * 180.02562 * 13 12 10 15 15 O 1.21290 * 120.00375 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00086 * 179.72392 * 14 13 12 17 17 C 1.37094 * 120.00295 * 180.27346 * 16 14 13 18 18 H 1.08008 * 119.99753 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00268 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99585 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00252 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47201 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47262 * 119.99762 * 21 19 17 24 24 H 1.48502 * 109.47185 * 240.00019 * 21 19 17 25 25 C 1.54290 * 104.96070 * 336.13210 * 10 9 8 26 26 H 1.09005 * 110.34072 * 118.97274 * 25 10 9 27 27 C 1.52993 * 110.34408 * 241.12814 * 25 10 9 28 28 C 1.48142 * 127.84167 * 0.02698 * 8 6 5 29 29 H 1.09010 * 109.47155 * 300.00266 * 1 2 3 30 30 H 1.08997 * 109.47439 * 59.99762 * 1 2 3 31 31 H 1.09002 * 109.47425 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47438 * 239.99492 * 2 1 3 33 33 H 1.09005 * 109.47430 * 119.99943 * 2 1 3 34 34 H 1.08993 * 109.47398 * 264.38616 * 4 3 2 35 35 H 1.08997 * 109.47033 * 24.39288 * 4 3 2 36 36 H 1.09005 * 109.46706 * 144.38780 * 4 3 2 37 37 H 1.08001 * 119.99341 * 352.84145 * 5 3 2 38 38 H 1.08997 * 110.40909 * 100.80153 * 9 8 6 39 39 H 1.09000 * 110.40941 * 338.36567 * 9 8 6 40 40 H 1.00898 * 111.00123 * 325.51336 * 12 10 9 41 41 H 1.08999 * 109.46990 * 60.00542 * 13 12 10 42 42 H 1.08993 * 109.47137 * 300.00266 * 13 12 10 43 43 H 0.97005 * 119.99797 * 0.28321 * 16 14 13 44 44 H 0.97002 * 119.99463 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.47204 * 60.00075 * 27 25 10 46 46 H 1.09004 * 109.47151 * 179.97438 * 27 25 10 47 47 H 1.08998 * 109.47403 * 300.00239 * 27 25 10 48 48 H 1.08999 * 110.40403 * 21.62859 * 28 8 6 49 49 H 1.09005 * 110.40712 * 259.20207 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1763 2.1690 -1.3002 5 6 2.3487 2.0144 1.1473 6 6 2.9857 3.3402 1.1384 7 8 3.3223 3.8460 0.0848 8 7 3.1963 3.9945 2.2977 9 6 3.8174 5.3256 2.4900 10 6 4.6893 5.1697 3.7546 11 1 4.6586 6.0803 4.3527 12 7 6.0742 4.8498 3.3838 13 6 6.8655 6.0735 3.1979 14 6 8.2769 5.7062 2.8185 15 8 8.5927 4.5399 2.7129 16 7 9.1870 6.6740 2.5906 17 6 10.4696 6.3400 2.2401 18 1 10.7507 5.3014 2.1461 19 6 11.4079 7.3376 2.0057 20 7 11.0660 8.6013 2.1205 21 14 13.1553 6.8826 1.5273 22 1 13.2830 5.4043 1.4668 23 1 13.4712 7.4620 0.1970 24 1 14.1011 7.4197 2.5384 25 6 4.0575 3.9960 4.5318 26 1 4.7755 3.1830 4.6398 27 6 3.5765 4.4658 5.9060 28 6 2.8593 3.5457 3.6687 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2046 2.0904 -1.6528 35 1 1.5037 1.7397 -2.0428 36 1 1.9244 3.2182 -1.1455 37 1 2.1378 1.5228 2.0856 38 1 3.0504 6.0836 2.6484 39 1 4.4366 5.5839 1.6310 40 1 6.1030 4.2716 2.5573 41 1 6.8753 6.6443 4.1263 42 1 6.4218 6.6761 2.4055 43 1 8.9345 7.6068 2.6748 44 1 11.7212 9.2978 1.9573 45 1 2.8314 5.2515 5.7811 46 1 3.1328 3.6268 6.4420 47 1 4.4220 4.8540 6.4739 48 1 2.7556 2.4611 3.6988 49 1 1.9425 4.0257 4.0111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755108895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:15 Heat of formation + Delta-G solvation = -58.291031 kcal Electronic energy + Delta-G solvation = -27406.232240 eV Core-core repulsion = 23561.310052 eV Total energy + Delta-G solvation = -3844.922188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34850 -38.68025 -37.91931 -36.23305 -34.56063 -33.72741 -32.60052 -31.25689 -31.17094 -29.27675 -27.74976 -26.51109 -26.05632 -24.50915 -23.92700 -22.50251 -20.53884 -20.02191 -19.17300 -18.22856 -17.83193 -17.40049 -16.16803 -16.06092 -15.57144 -15.12119 -14.93970 -14.75482 -14.47289 -14.46394 -14.06362 -13.98871 -13.54702 -13.46784 -13.31904 -12.86344 -12.83641 -12.66196 -12.57292 -12.37446 -12.10815 -12.03644 -11.71784 -11.67923 -11.56673 -11.52373 -11.25063 -11.10851 -11.04962 -11.00554 -10.81020 -10.31867 -10.19453 -9.64089 -9.49187 -9.35345 -8.87562 -8.40166 -7.99769 -7.92254 -6.38940 -3.79418 1.21103 2.87683 3.18678 3.20103 3.28937 3.36594 3.94076 4.08449 4.24715 4.31620 4.42289 4.51427 4.61824 4.82359 4.91001 4.93737 4.97787 5.09317 5.18212 5.20042 5.24897 5.29599 5.30292 5.37936 5.40139 5.52761 5.53980 5.57490 5.58794 5.64068 5.68479 5.78624 5.81156 5.86603 5.92571 6.02614 6.03210 6.11615 6.20304 6.32709 6.34818 6.39099 7.25076 7.50293 7.58353 7.64802 8.09559 8.15665 8.64399 9.21054 9.57427 10.09028 10.78964 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002530 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.407804 B =11064.461778 C =12297.352949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.028 4.028 4 C -0.125 4.125 5 C -0.228 4.228 6 C 0.565 3.435 7 O -0.539 6.539 8 N -0.619 5.619 9 C 0.073 3.927 10 C 0.077 3.923 11 H 0.095 0.905 12 N -0.657 5.657 13 C 0.048 3.952 14 C 0.441 3.559 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.099 4.099 26 H 0.096 0.904 27 C -0.139 4.139 28 C 0.105 3.895 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.352 0.648 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.040 -10.352 2.472 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.029 4.029 4 C -0.181 4.181 5 C -0.249 4.249 6 C 0.358 3.642 7 O -0.418 6.418 8 N -0.352 5.352 9 C -0.051 4.051 10 C -0.035 4.035 11 H 0.113 0.887 12 N -0.288 5.288 13 C -0.084 4.084 14 C 0.227 3.773 15 O -0.467 6.467 16 N -0.201 5.201 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.181 4.181 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.119 4.119 26 H 0.115 0.885 27 C -0.197 4.197 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.173 0.827 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.318 -10.849 2.350 25.826 hybrid contribution 0.420 0.853 -0.838 1.267 sum -22.899 -9.996 1.512 25.031 Atomic orbital electron populations 1.21720 0.94253 1.02036 1.02388 1.20772 0.96600 0.92603 1.03500 1.22558 0.90242 0.94719 0.95431 1.21151 1.02511 1.01159 0.93282 1.22301 1.07492 0.96260 0.98843 1.18176 0.78981 0.85137 0.81884 1.90788 1.52240 1.69152 1.29665 1.48801 1.60887 1.19481 1.06053 1.23158 0.97334 0.84881 0.99739 1.22683 0.87937 0.98315 0.94531 0.88726 1.60234 1.08089 1.17167 1.43342 1.21736 0.93761 0.92017 1.00904 1.19799 0.86517 0.86525 0.84478 1.90527 1.80469 1.18809 1.56853 1.41866 1.09792 1.07981 1.60465 1.19751 0.85256 0.94884 1.42792 0.87905 1.25265 1.00398 0.94751 0.97637 1.69625 1.35825 0.99114 1.49803 0.85798 0.81663 0.78899 0.77976 1.19230 1.20773 1.20758 1.22185 0.96309 0.99017 0.94420 0.88531 1.21779 1.01356 1.00994 0.95569 1.22565 0.97770 1.00357 0.81184 0.92438 0.92340 0.92100 0.90213 0.90624 0.90111 0.92740 0.89331 0.85762 0.91021 0.89831 0.82717 0.89475 0.93813 0.77470 0.91962 0.92699 0.92450 0.91714 0.90290 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.15 0.37 -0.48 16 2 C -0.10 -0.68 6.08 -27.89 -0.17 -0.85 16 3 C -0.03 -0.27 5.36 -101.17 -0.54 -0.81 16 4 C -0.13 -1.35 8.48 36.01 0.31 -1.04 16 5 C -0.23 -2.43 9.14 -37.81 -0.35 -2.78 16 6 C 0.57 7.81 7.71 -12.67 -0.10 7.71 16 7 O -0.54 -9.23 13.55 5.27 0.07 -9.16 16 8 N -0.62 -7.47 3.32 -170.70 -0.57 -8.03 16 9 C 0.07 0.90 6.49 -2.41 -0.02 0.89 16 10 C 0.08 0.93 3.04 -66.31 -0.20 0.73 16 11 H 0.09 1.02 7.39 -51.93 -0.38 0.64 16 12 N -0.66 -10.82 5.80 -106.51 -0.62 -11.44 16 13 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 14 C 0.44 10.72 7.82 -10.99 -0.09 10.64 16 15 O -0.58 -16.33 15.78 5.55 0.09 -16.25 16 16 N -0.56 -14.65 5.29 -10.96 -0.06 -14.71 16 17 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 18 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.97 13.05 55.50 0.72 -24.24 16 21 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.10 -0.99 3.45 -89.22 -0.31 -1.29 16 26 H 0.10 1.14 7.95 -51.93 -0.41 0.73 16 27 C -0.14 -1.08 8.92 37.15 0.33 -0.75 16 28 C 0.10 0.92 6.44 -2.41 -0.02 0.91 16 29 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 34 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 35 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.09 1.14 6.14 -51.93 -0.32 0.82 16 37 H 0.12 1.03 6.69 -52.49 -0.35 0.68 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.24 7.73 -51.93 -0.40 0.84 16 40 H 0.35 6.55 8.12 -39.29 -0.32 6.23 16 41 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 42 H 0.04 0.73 8.12 -51.93 -0.42 0.30 16 43 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.08 0.60 6.66 -51.93 -0.35 0.25 16 49 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 LS Contribution 398.98 15.07 6.01 6.01 Total: -1.00 -33.74 398.98 -8.66 -42.40 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -8.25 Total: 13.40 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.05 Total: 5.55 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.52 Total: -58.43 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.16 Total: -25.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.74 -8.66 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755108895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.891 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds