Wall clock time and date at job start Fri Apr 10 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 109.47312 * 2 1 4 4 C 1.50704 * 119.99417 * 274.99676 * 3 2 1 5 5 C 1.32993 * 120.00562 * 95.00086 * 3 2 1 6 6 C 1.47100 * 120.00347 * 172.83834 * 5 3 2 7 7 O 1.21612 * 119.99731 * 354.00989 * 6 5 3 8 8 N 1.34776 * 119.99813 * 174.00642 * 6 5 3 9 9 C 1.48147 * 127.83328 * 180.02562 * 8 6 5 10 10 C 1.54390 * 104.61498 * 219.58497 * 9 8 6 11 11 H 1.08997 * 110.43704 * 217.21743 * 10 9 8 12 12 N 1.46897 * 110.34527 * 95.00083 * 10 9 8 13 13 C 1.46903 * 110.99890 * 89.46205 * 12 10 9 14 14 C 1.50696 * 109.47160 * 180.02562 * 13 12 10 15 15 O 1.21290 * 120.00375 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00086 * 179.72392 * 14 13 12 17 17 C 1.37094 * 120.00295 * 180.27346 * 16 14 13 18 18 H 1.08008 * 119.99753 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00268 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99585 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00252 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47201 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47262 * 119.99762 * 21 19 17 24 24 H 1.48502 * 109.47185 * 240.00019 * 21 19 17 25 25 C 1.54290 * 104.96070 * 336.13210 * 10 9 8 26 26 H 1.09005 * 110.34072 * 118.97274 * 25 10 9 27 27 C 1.52993 * 110.34408 * 241.12814 * 25 10 9 28 28 C 1.48142 * 127.84167 * 0.02698 * 8 6 5 29 29 H 1.09010 * 109.47155 * 300.00266 * 1 2 3 30 30 H 1.08997 * 109.47439 * 59.99762 * 1 2 3 31 31 H 1.09002 * 109.47425 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47438 * 239.99492 * 2 1 3 33 33 H 1.09005 * 109.47430 * 119.99943 * 2 1 3 34 34 H 1.08993 * 109.47398 * 264.38616 * 4 3 2 35 35 H 1.08997 * 109.47033 * 24.39288 * 4 3 2 36 36 H 1.09005 * 109.46706 * 144.38780 * 4 3 2 37 37 H 1.08001 * 119.99341 * 352.84145 * 5 3 2 38 38 H 1.08997 * 110.40909 * 100.80153 * 9 8 6 39 39 H 1.09000 * 110.40941 * 338.36567 * 9 8 6 40 40 H 1.00898 * 111.00123 * 325.51336 * 12 10 9 41 41 H 1.08999 * 109.46990 * 60.00542 * 13 12 10 42 42 H 1.08993 * 109.47137 * 300.00266 * 13 12 10 43 43 H 0.97005 * 119.99797 * 0.28321 * 16 14 13 44 44 H 0.97002 * 119.99463 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.47204 * 60.00075 * 27 25 10 46 46 H 1.09004 * 109.47151 * 179.97438 * 27 25 10 47 47 H 1.08998 * 109.47403 * 300.00239 * 27 25 10 48 48 H 1.08999 * 110.40403 * 21.62859 * 28 8 6 49 49 H 1.09005 * 110.40712 * 259.20207 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1763 2.1690 -1.3002 5 6 2.3487 2.0144 1.1473 6 6 2.9857 3.3402 1.1384 7 8 3.3223 3.8460 0.0848 8 7 3.1963 3.9945 2.2977 9 6 3.8174 5.3256 2.4900 10 6 4.6893 5.1697 3.7546 11 1 4.6586 6.0803 4.3527 12 7 6.0742 4.8498 3.3838 13 6 6.8655 6.0735 3.1979 14 6 8.2769 5.7062 2.8185 15 8 8.5927 4.5399 2.7129 16 7 9.1870 6.6740 2.5906 17 6 10.4696 6.3400 2.2401 18 1 10.7507 5.3014 2.1461 19 6 11.4079 7.3376 2.0057 20 7 11.0660 8.6013 2.1205 21 14 13.1553 6.8826 1.5273 22 1 13.2830 5.4043 1.4668 23 1 13.4712 7.4620 0.1970 24 1 14.1011 7.4197 2.5384 25 6 4.0575 3.9960 4.5318 26 1 4.7755 3.1830 4.6398 27 6 3.5765 4.4658 5.9060 28 6 2.8593 3.5457 3.6687 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2046 2.0904 -1.6528 35 1 1.5037 1.7397 -2.0428 36 1 1.9244 3.2182 -1.1455 37 1 2.1378 1.5228 2.0856 38 1 3.0504 6.0836 2.6484 39 1 4.4366 5.5839 1.6310 40 1 6.1030 4.2716 2.5573 41 1 6.8753 6.6443 4.1263 42 1 6.4218 6.6761 2.4055 43 1 8.9345 7.6068 2.6748 44 1 11.7212 9.2978 1.9573 45 1 2.8314 5.2515 5.7811 46 1 3.1328 3.6268 6.4420 47 1 4.4220 4.8540 6.4739 48 1 2.7556 2.4611 3.6988 49 1 1.9425 4.0257 4.0111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755108895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:15 Heat of formation + Delta-G solvation = -82.060381 kcal Electronic energy + Delta-G solvation = -27407.262956 eV Core-core repulsion = 23561.310052 eV Total energy + Delta-G solvation = -3845.952904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32863 -40.20790 -39.31076 -37.01528 -36.18574 -35.45937 -33.52269 -33.25957 -31.89283 -30.33526 -28.83364 -27.67803 -27.11088 -25.96478 -24.84858 -23.48956 -21.50466 -21.04658 -20.83987 -19.93430 -19.06651 -18.36044 -17.76195 -17.18238 -16.70541 -16.44908 -16.29330 -16.08052 -15.76951 -15.49993 -15.27318 -15.13984 -14.89962 -14.47723 -14.24019 -13.99576 -13.72394 -13.67630 -13.53443 -13.48100 -13.32129 -13.08700 -13.05867 -12.88008 -12.79276 -12.53282 -12.44248 -12.27616 -12.14449 -11.98917 -11.83732 -11.76643 -11.62931 -11.54631 -10.65667 -10.39576 -10.21799 -10.04860 -9.82649 -9.23281 -8.49667 -5.98552 0.36506 1.34263 1.39283 1.53927 1.97779 2.01551 2.24041 2.27038 2.86456 3.17054 3.38741 3.52377 3.57774 3.78454 3.86678 4.10459 4.14807 4.19439 4.28785 4.31894 4.37253 4.42160 4.44961 4.50641 4.56732 4.61406 4.66126 4.68587 4.74425 4.78713 4.82510 4.94231 5.00297 5.06497 5.10388 5.18354 5.24623 5.35791 5.36533 5.38288 5.49231 5.53938 5.61766 5.89229 6.10001 6.23468 6.56683 6.58006 7.09425 7.15834 7.52246 8.07916 8.68007 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002530 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.407804 B =11064.461778 C =12297.352949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.023 4.023 4 C -0.124 4.124 5 C -0.238 4.238 6 C 0.551 3.449 7 O -0.588 6.588 8 N -0.621 5.621 9 C 0.074 3.926 10 C 0.078 3.922 11 H 0.114 0.886 12 N -0.667 5.667 13 C 0.064 3.936 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.334 4.334 18 H 0.077 0.923 19 C -0.014 4.014 20 N -0.919 5.919 21 Si 0.994 3.006 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.268 1.268 25 C -0.094 4.094 26 H 0.075 0.925 27 C -0.133 4.133 28 C 0.106 3.894 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.152 0.848 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.336 0.664 41 H 0.114 0.886 42 H 0.060 0.940 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.797 -10.822 3.881 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.025 4.025 4 C -0.180 4.180 5 C -0.259 4.259 6 C 0.345 3.655 7 O -0.471 6.471 8 N -0.354 5.354 9 C -0.051 4.051 10 C -0.033 4.033 11 H 0.132 0.868 12 N -0.298 5.298 13 C -0.069 4.069 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.464 4.464 18 H 0.095 0.905 19 C -0.214 4.214 20 N -0.560 5.560 21 Si 0.818 3.182 22 H -0.199 1.199 23 H -0.196 1.196 24 H -0.193 1.193 25 C -0.114 4.114 26 H 0.093 0.907 27 C -0.190 4.190 28 C -0.016 4.016 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.170 0.830 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.154 0.846 41 H 0.132 0.868 42 H 0.078 0.922 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.114 0.886 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.110 -11.287 3.815 27.794 hybrid contribution 0.933 1.004 -1.286 1.879 sum -24.178 -10.283 2.528 26.395 Atomic orbital electron populations 1.21714 0.93067 1.03029 1.02324 1.20830 0.97462 0.90385 1.04443 1.22842 0.89168 0.96006 0.94478 1.21068 1.01776 1.00270 0.94861 1.22410 1.08100 0.94986 1.00392 1.18829 0.78820 0.86148 0.81680 1.90765 1.54480 1.70429 1.31427 1.48938 1.60113 1.19300 1.07022 1.23126 0.97645 0.85896 0.98384 1.22871 0.85394 1.00259 0.94779 0.86768 1.60303 1.10774 1.16352 1.42337 1.21612 0.89778 0.93033 1.02442 1.20912 0.88558 0.85601 0.82616 1.90490 1.81803 1.20624 1.58287 1.41931 1.09568 1.08516 1.60925 1.19687 0.87116 0.94170 1.45404 0.90541 1.26068 1.03946 0.94543 0.96798 1.69680 1.37255 0.99696 1.49381 0.84859 0.76892 0.78189 0.78307 1.19940 1.19560 1.19269 1.22142 0.96147 0.97353 0.95726 0.90679 1.21741 1.01406 1.02125 0.93768 1.22789 0.98131 1.01771 0.78876 0.92324 0.92649 0.90560 0.89541 0.89448 0.92107 0.90416 0.91724 0.83021 0.88653 0.93217 0.84601 0.86834 0.92248 0.76914 0.91228 0.90970 0.90780 0.92741 0.88638 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.89 71.98 0.71 -0.59 16 2 C -0.09 -1.11 6.08 29.85 0.18 -0.92 16 3 C -0.02 -0.43 5.36 -17.61 -0.09 -0.53 16 4 C -0.12 -2.76 8.48 71.24 0.60 -2.15 16 5 C -0.24 -4.87 9.14 23.43 0.21 -4.65 16 6 C 0.55 15.48 7.71 86.57 0.67 16.15 16 7 O -0.59 -21.43 13.55 -4.07 -0.06 -21.48 16 8 N -0.62 -14.59 3.32 -812.23 -2.69 -17.28 16 9 C 0.07 1.78 6.49 86.53 0.56 2.34 16 10 C 0.08 1.77 3.04 45.83 0.14 1.91 16 11 H 0.11 2.17 7.39 -2.39 -0.02 2.15 16 12 N -0.67 -22.14 5.80 -490.90 -2.85 -24.99 16 13 C 0.06 2.28 6.02 85.56 0.51 2.79 16 14 C 0.44 21.80 7.82 87.65 0.69 22.48 16 15 O -0.63 -36.58 15.78 -3.06 -0.05 -36.63 16 16 N -0.57 -30.55 5.29 -306.98 -1.62 -32.17 16 17 C -0.33 -19.67 9.68 84.04 0.81 -18.86 16 18 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 19 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 20 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 21 Si 0.99 44.17 29.55 68.60 2.03 46.20 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.09 -1.67 3.45 -9.89 -0.03 -1.71 16 26 H 0.07 1.70 7.95 -2.38 -0.02 1.68 16 27 C -0.13 -1.63 8.92 71.98 0.64 -0.99 16 28 C 0.11 1.59 6.44 86.53 0.56 2.15 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.86 8.04 -2.38 -0.02 0.84 16 34 H 0.06 1.59 8.04 -2.39 -0.02 1.57 16 35 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 36 H 0.06 1.77 6.14 -2.38 -0.01 1.76 16 37 H 0.15 2.14 6.69 -2.91 -0.02 2.12 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.54 7.73 -2.39 -0.02 1.52 16 40 H 0.34 13.03 8.12 -89.70 -0.73 12.30 16 41 H 0.11 3.49 8.07 -2.39 -0.02 3.47 16 42 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 43 H 0.40 19.99 7.90 -92.70 -0.73 19.26 16 44 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.10 1.15 6.66 -2.39 -0.02 1.13 16 49 H 0.10 1.01 7.83 -2.38 -0.02 1.00 16 Total: -1.00 -77.20 398.98 1.17 -76.03 By element: Atomic # 1 Polarization: 44.11 SS G_CDS: -0.51 Total: 43.60 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.63 Total: 17.13 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -6.88 Total: -124.85 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -0.10 Total: -58.11 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -77.20 1.17 -76.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755108895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.029 kcal (2) G-P(sol) polarization free energy of solvation -77.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds