Wall clock time and date at job start Fri Apr 10 2020 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47083 * 2 1 4 4 H 1.09001 * 109.12982 * 54.48164 * 3 2 1 5 5 C 1.53103 * 109.20326 * 174.14828 * 3 2 1 6 6 C 1.53346 * 108.52762 * 171.30312 * 5 3 2 7 7 H 1.08997 * 109.67155 * 172.57363 * 6 5 3 8 8 C 1.50700 * 109.70094 * 52.06325 * 6 5 3 9 9 O 1.21286 * 119.99802 * 265.57750 * 8 6 5 10 10 N 1.34774 * 120.00367 * 85.58184 * 8 6 5 11 11 C 1.46503 * 119.99967 * 5.16514 * 10 8 6 12 12 C 1.52998 * 109.47066 * 84.47514 * 11 10 8 13 13 C 1.46498 * 120.00242 * 185.15948 * 10 8 6 14 14 C 1.53944 * 113.74406 * 216.67593 * 13 10 8 15 15 N 1.47579 * 86.11721 * 222.04873 * 14 13 10 16 16 C 1.36937 * 134.49232 * 204.64409 * 15 14 13 17 17 H 1.07998 * 120.00154 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00039 * 359.97438 * 16 15 14 19 19 N 1.31622 * 120.00128 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99903 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47230 * 60.00481 * 20 18 16 22 22 H 1.48502 * 109.47123 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47325 * 299.99829 * 20 18 16 24 24 C 1.47581 * 91.01733 * 24.63939 * 15 14 13 25 25 C 1.53072 * 108.42545 * 292.31026 * 6 5 3 26 26 C 1.50171 * 109.89168 * 48.90092 * 25 6 5 27 27 O 1.21279 * 118.24799 * 162.44293 * 26 25 6 28 28 N 1.33360 * 123.50667 * 342.41512 * 26 25 6 29 29 H 1.08994 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46945 * 300.00411 * 1 2 3 31 31 H 1.08998 * 109.46980 * 59.99404 * 1 2 3 32 32 H 1.08993 * 109.46945 * 240.00284 * 2 1 3 33 33 H 1.09004 * 109.47269 * 119.99931 * 2 1 3 34 34 H 1.09002 * 109.80943 * 51.51587 * 5 3 2 35 35 H 1.08997 * 109.54884 * 290.93908 * 5 3 2 36 36 H 1.08998 * 109.47095 * 204.48368 * 11 10 8 37 37 H 1.09010 * 109.46820 * 324.47827 * 11 10 8 38 38 H 1.08996 * 109.47856 * 293.91409 * 12 11 10 39 39 H 1.08994 * 109.47088 * 53.92060 * 12 11 10 40 40 H 1.09006 * 109.46856 * 173.91469 * 12 11 10 41 41 H 1.08998 * 112.94400 * 348.41128 * 13 10 8 42 42 H 1.09005 * 113.76813 * 336.34974 * 14 13 10 43 43 H 1.09002 * 113.76764 * 107.74568 * 14 13 10 44 44 H 0.96994 * 120.00249 * 180.02562 * 19 18 16 45 45 H 1.08999 * 113.77195 * 221.06298 * 24 15 14 46 46 H 1.09005 * 113.87092 * 89.66834 * 24 15 14 47 47 H 1.09003 * 109.39837 * 288.76842 * 25 6 5 48 48 H 1.08999 * 109.40052 * 169.02902 * 25 6 5 49 49 H 0.96996 * 117.94328 * 182.22376 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5950 1.9787 0.8382 5 6 3.5640 1.4379 0.1474 6 6 4.0791 2.8654 -0.0726 7 1 5.1437 2.9107 0.1568 8 6 3.3271 3.8199 0.8187 9 8 2.3544 4.4071 0.3944 10 7 3.7354 4.0211 2.0872 11 6 4.9736 3.4009 2.5653 12 6 6.1652 4.2819 2.1851 13 6 2.9413 4.8602 2.9880 14 6 3.7891 5.7133 3.9489 15 7 2.8036 5.3462 4.9843 16 6 2.3906 5.9135 6.1602 17 1 1.6296 5.4302 6.7549 18 6 2.9506 7.1093 6.5882 19 7 3.8784 7.6982 5.8637 20 14 2.3876 7.8828 8.1926 21 1 2.6477 6.9436 9.3131 22 1 3.1348 9.1455 8.4224 23 1 0.9335 8.1742 8.1182 24 6 2.4420 4.1221 4.2434 25 6 3.8514 3.2413 -1.5388 26 6 2.4400 2.9169 -1.9362 27 8 1.9926 3.4336 -2.9381 28 7 1.6525 2.0905 -1.2467 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.0048 0.7717 -0.5942 35 1 3.8325 1.1025 1.1491 36 1 4.9316 3.2944 3.6493 37 1 5.0878 2.4180 2.1078 38 1 6.2720 4.3006 1.1005 39 1 5.9995 5.2950 2.5513 40 1 7.0733 3.8778 2.6327 41 1 2.1633 5.4214 2.4705 42 1 4.7863 5.3117 4.1294 43 1 3.7948 6.7756 3.7047 44 1 4.2701 8.5335 6.1630 45 1 1.3721 3.9140 4.2343 46 1 3.0424 3.2520 4.5093 47 1 4.5428 2.6807 -2.1679 48 1 4.0283 4.3088 -1.6706 49 1 0.7648 1.9126 -1.5947 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950962082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:11 Heat of formation + Delta-G solvation = -46.495603 kcal Electronic energy + Delta-G solvation = -29434.976834 eV Core-core repulsion = 25590.566134 eV Total energy + Delta-G solvation = -3844.410700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.18671 -40.71701 -39.21733 -37.85821 -36.43184 -34.83194 -34.00696 -32.93125 -31.35375 -30.00066 -29.48915 -26.69023 -26.59010 -25.08075 -24.59616 -23.62213 -22.54910 -21.75225 -20.32851 -19.41455 -18.82935 -18.26222 -18.05619 -17.31910 -17.14972 -16.76744 -16.49387 -16.00077 -15.75064 -15.37421 -15.18329 -15.01986 -14.70002 -14.48888 -14.27344 -14.15955 -13.84645 -13.58404 -13.51749 -13.24328 -13.16743 -12.98935 -12.85830 -12.81353 -12.63333 -12.35666 -12.30008 -12.16785 -12.06498 -11.98683 -11.87758 -11.82253 -11.68244 -11.50388 -10.86739 -10.77467 -10.60231 -10.00000 -9.52888 -8.95419 -7.93326 -5.27282 1.44807 1.48331 1.54346 1.62064 1.74912 1.98301 2.43079 2.48358 3.26157 3.36181 3.45137 3.56545 3.61159 3.78586 3.81848 3.91117 4.13799 4.22472 4.23243 4.30657 4.41671 4.46297 4.48335 4.55280 4.60864 4.63435 4.74639 4.76334 4.79428 4.86522 4.88861 4.92818 4.98957 5.03059 5.12927 5.14171 5.19653 5.28181 5.32482 5.41709 5.46148 5.50337 5.76579 5.87388 5.89880 6.46279 6.55479 6.88543 7.24536 7.28878 7.57305 8.50909 9.23278 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.003344 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.882169 B = 8371.870049 C = 8855.270619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.124 4.124 3 C 0.130 3.870 4 H 0.049 0.951 5 C -0.115 4.115 6 C -0.106 4.106 7 H 0.146 0.854 8 C 0.509 3.491 9 O -0.584 6.584 10 N -0.590 5.590 11 C 0.096 3.904 12 C -0.175 4.175 13 C 0.115 3.885 14 C 0.163 3.837 15 N -0.638 5.638 16 C -0.237 4.237 17 H 0.085 0.915 18 C -0.063 4.063 19 N -0.952 5.952 20 Si 0.980 3.020 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.279 1.279 24 C 0.119 3.881 25 C -0.115 4.115 26 C 0.527 3.473 27 O -0.622 6.622 28 N -0.702 5.702 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.029 0.971 44 H 0.249 0.751 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.146 0.854 48 H 0.083 0.917 49 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -21.413 -11.468 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.162 4.162 3 C 0.026 3.974 4 H 0.067 0.933 5 C -0.153 4.153 6 C -0.127 4.127 7 H 0.164 0.836 8 C 0.299 3.701 9 O -0.464 6.464 10 N -0.321 5.321 11 C -0.025 4.025 12 C -0.233 4.233 13 C 0.010 3.990 14 C 0.037 3.963 15 N -0.365 5.365 16 C -0.366 4.366 17 H 0.103 0.897 18 C -0.256 4.256 19 N -0.600 5.600 20 Si 0.807 3.193 21 H -0.199 1.199 22 H -0.220 1.220 23 H -0.206 1.206 24 C -0.007 4.007 25 C -0.155 4.155 26 C 0.316 3.684 27 O -0.506 6.506 28 N -0.351 5.351 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.164 0.836 48 H 0.102 0.898 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.023 -20.587 -11.809 24.259 hybrid contribution -1.007 1.461 1.004 2.039 sum 4.016 -19.126 -10.805 22.331 Atomic orbital electron populations 1.21832 0.96252 1.02546 1.01152 1.21876 0.95905 0.93658 1.04736 1.21251 0.96800 0.94294 0.85052 0.93278 1.22096 0.92672 0.93602 1.06928 1.21658 1.03454 0.95216 0.92419 0.83645 1.21309 0.84382 0.82333 0.82109 1.90735 1.30203 1.51019 1.74456 1.48121 1.24611 1.48574 1.10832 1.21906 0.81754 0.97569 1.01273 1.22318 0.98533 0.99839 1.02570 1.23172 0.94663 0.92768 0.88406 1.22537 0.92319 0.96893 0.84594 1.45962 1.44476 1.23078 1.22962 1.19340 1.17237 1.03343 0.96646 0.89699 1.25624 0.99201 0.98415 1.02394 1.69998 1.30841 1.19101 1.40090 0.85142 0.77460 0.77381 0.79279 1.19852 1.22039 1.20556 1.23055 0.98550 0.90581 0.88508 1.21559 0.93048 1.04389 0.96518 1.20454 0.89497 0.76645 0.81792 1.90693 1.76219 1.53682 1.29999 1.45534 1.17979 1.46558 1.25065 0.90896 0.93475 0.93694 0.89826 0.88153 0.86056 0.86434 0.90600 0.85923 0.90987 0.94920 0.89202 0.90146 0.93624 0.95262 0.94213 0.93666 0.91677 0.83648 0.89834 0.77204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.76 71.98 0.70 -1.37 16 2 C -0.12 -1.26 5.57 30.60 0.17 -1.09 16 3 C 0.13 2.09 2.36 45.17 0.11 2.20 16 4 H 0.05 1.10 7.22 -2.39 -0.02 1.09 16 5 C -0.12 -1.10 4.81 30.74 0.15 -0.96 16 6 C -0.11 -1.64 2.21 -11.40 -0.03 -1.67 16 7 H 0.15 1.23 5.55 -2.39 -0.01 1.22 16 8 C 0.51 13.87 5.46 87.66 0.48 14.35 16 9 O -0.58 -22.29 14.00 -3.05 -0.04 -22.34 16 10 N -0.59 -16.28 2.70 -803.51 -2.17 -18.45 16 11 C 0.10 1.82 4.79 86.38 0.41 2.24 16 12 C -0.17 -3.28 9.74 71.98 0.70 -2.58 16 13 C 0.12 4.47 4.41 46.75 0.21 4.68 16 14 C 0.16 7.60 6.40 86.48 0.55 8.15 16 15 N -0.64 -32.45 3.70 -717.36 -2.65 -35.10 16 16 C -0.24 -13.30 10.70 84.03 0.90 -12.40 16 17 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 18 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 19 N -0.95 -57.36 11.38 21.65 0.25 -57.11 16 20 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 C 0.12 4.65 8.44 86.48 0.73 5.38 16 25 C -0.12 -2.27 5.22 29.71 0.16 -2.11 16 26 C 0.53 14.69 6.38 87.71 0.56 15.25 16 27 O -0.62 -23.56 17.78 -3.03 -0.05 -23.62 16 28 N -0.70 -15.84 4.91 -446.35 -2.19 -18.03 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.65 6.67 -2.39 -0.02 0.63 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.12 0.48 8.11 -2.39 -0.02 0.46 16 35 H 0.12 0.59 7.08 -2.39 -0.02 0.58 16 36 H 0.08 1.69 6.15 -2.39 -0.01 1.67 16 37 H 0.12 1.12 5.58 -2.38 -0.01 1.11 16 38 H 0.07 1.07 6.98 -2.39 -0.02 1.06 16 39 H 0.03 0.89 6.61 -2.39 -0.02 0.87 16 40 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.08 3.67 7.22 -2.39 -0.02 3.66 16 42 H 0.05 2.03 5.41 -2.38 -0.01 2.02 16 43 H 0.03 1.61 7.15 -2.39 -0.02 1.60 16 44 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 2.19 7.06 -2.38 -0.02 2.18 16 47 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.08 2.03 8.10 -2.39 -0.02 2.01 16 49 H 0.39 9.04 7.04 -92.71 -0.65 8.39 16 Total: -1.00 -83.99 372.17 1.74 -82.25 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.31 Total: 17.83 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 6.27 Total: 26.95 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -6.77 Total: -128.69 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.10 Total: -45.95 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -83.99 1.74 -82.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950962082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.754 kcal (2) G-P(sol) polarization free energy of solvation -83.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds