Wall clock time and date at job start Fri Apr 10 2020 18:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46885 * 2 1 4 4 N 1.46499 * 109.46876 * 179.97438 * 3 2 1 5 5 C 1.46766 * 124.34914 * 269.99462 * 4 3 2 6 6 C 1.54478 * 105.47095 * 196.99905 * 5 4 3 7 7 H 1.09004 * 110.96443 * 92.70661 * 6 5 4 8 8 C 1.50697 * 110.96882 * 216.46454 * 6 5 4 9 9 O 1.21287 * 120.00201 * 353.83993 * 8 6 5 10 10 N 1.34778 * 119.99887 * 173.83207 * 8 6 5 11 11 C 1.46503 * 119.99901 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47283 * 35.00010 * 11 10 8 13 13 C 1.53001 * 109.47276 * 275.00272 * 11 10 8 14 14 C 1.52997 * 109.47181 * 155.00149 * 11 10 8 15 15 C 1.53941 * 113.74371 * 278.74127 * 14 11 10 16 16 N 1.47805 * 86.03785 * 222.08564 * 15 14 11 17 17 C 1.36943 * 134.45734 * 204.64956 * 16 15 14 18 18 H 1.07992 * 120.00232 * 173.34898 * 17 16 15 19 19 C 1.38815 * 119.99772 * 353.33681 * 17 16 15 20 20 N 1.31619 * 120.00004 * 5.07464 * 19 17 16 21 21 Si 1.86798 * 120.00063 * 185.06620 * 19 17 16 22 22 H 1.48503 * 109.47227 * 94.99112 * 21 19 17 23 23 H 1.48499 * 109.47222 * 214.99432 * 21 19 17 24 24 H 1.48498 * 109.47043 * 334.99017 * 21 19 17 25 25 C 1.47576 * 91.05444 * 24.54621 * 16 15 14 26 26 C 1.54628 * 101.76688 * 334.58660 * 6 5 4 27 27 C 1.34417 * 124.34927 * 89.98303 * 4 3 2 28 28 O 1.21279 * 124.94050 * 359.63721 * 27 4 3 29 29 H 1.08992 * 109.46877 * 60.00615 * 1 2 3 30 30 H 1.09001 * 109.46264 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47280 * 299.99761 * 1 2 3 32 32 H 1.08992 * 109.47280 * 240.00239 * 2 1 3 33 33 H 1.09004 * 109.47164 * 119.99680 * 2 1 3 34 34 H 1.09003 * 109.46690 * 59.99637 * 3 2 1 35 35 H 1.08992 * 109.46788 * 300.00179 * 3 2 1 36 36 H 1.09003 * 110.24638 * 316.00119 * 5 4 3 37 37 H 1.09000 * 110.24431 * 77.91243 * 5 4 3 38 38 H 0.96997 * 120.00395 * 0.02562 * 10 8 6 39 39 H 1.08999 * 109.47063 * 59.99592 * 13 11 10 40 40 H 1.08993 * 109.47536 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.47235 * 300.00278 * 13 11 10 42 42 H 1.08999 * 112.94174 * 50.33545 * 14 11 10 43 43 H 1.09003 * 113.76952 * 336.35150 * 15 14 11 44 44 H 1.09003 * 113.77049 * 107.74045 * 15 14 11 45 45 H 0.96998 * 120.00387 * 180.02562 * 20 19 17 46 46 H 1.08996 * 113.77356 * 221.15407 * 25 16 15 47 47 H 1.09004 * 113.87184 * 89.76491 * 25 16 15 48 48 H 1.08995 * 110.48886 * 266.11884 * 26 6 5 49 49 H 1.09001 * 110.48418 * 143.47566 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3326 1.4429 1.2127 6 6 5.7408 1.8780 0.7501 7 1 5.8668 2.9565 0.8458 8 6 6.8109 1.1421 1.5144 9 8 6.5067 0.4170 2.4378 10 7 8.1060 1.2897 1.1718 11 6 9.1463 0.5738 1.9145 12 1 8.7686 -0.4021 2.2198 13 6 9.5345 1.3811 3.1549 14 6 10.3747 0.3887 1.0215 15 6 10.2600 -0.7981 0.0477 16 7 11.6665 -1.0883 0.3970 17 6 12.6966 -1.7364 -0.2308 18 1 13.6863 -1.7228 0.2011 19 6 12.4686 -2.4109 -1.4224 20 7 11.2880 -2.3448 -2.0005 21 14 13.8373 -3.4122 -2.2056 22 1 13.7124 -4.8322 -1.7891 23 1 13.7349 -3.3192 -3.6841 24 1 15.1527 -2.8813 -1.7662 25 6 11.5160 -0.3972 1.6923 26 6 5.7301 1.4519 -0.7363 27 6 4.2639 1.4421 -1.1088 28 8 3.8355 1.4353 -2.2434 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9378 2.1535 1.9389 37 1 4.3684 0.4430 1.6452 38 1 8.3494 1.8698 0.4335 39 1 8.6593 1.5130 3.7911 40 1 10.3081 0.8483 3.7078 41 1 9.9122 2.3570 2.8498 42 1 10.6992 1.3152 0.5479 43 1 9.5590 -1.5669 0.3728 44 1 10.1162 -0.5016 -0.9913 45 1 11.1285 -2.8165 -2.8330 46 1 12.3732 0.2188 1.9639 47 1 11.1850 -1.0465 2.5028 48 1 6.1595 0.4567 -0.8510 49 1 6.2733 2.1752 -1.3444 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970494961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:29 Heat of formation + Delta-G solvation = -27.007157 kcal Electronic energy + Delta-G solvation = -27761.946497 eV Core-core repulsion = 23918.380879 eV Total energy + Delta-G solvation = -3843.565617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.01320 -39.55265 -38.12082 -36.54468 -35.07676 -34.85682 -32.36980 -31.80078 -30.21784 -27.91897 -27.54345 -26.63111 -24.96418 -24.17457 -23.28181 -22.04954 -21.19815 -20.29658 -19.61392 -19.04130 -17.58294 -17.00830 -16.76519 -16.15725 -16.09823 -15.46645 -15.06731 -14.88035 -14.73470 -14.16636 -14.08347 -13.86701 -13.74996 -13.59651 -13.32397 -13.11080 -12.90590 -12.50113 -12.45218 -12.18781 -12.09936 -11.78040 -11.69344 -11.65426 -11.54629 -11.34771 -11.32267 -11.00756 -10.91792 -10.74987 -10.38744 -10.18687 -9.94267 -9.80228 -9.69657 -9.42346 -8.96279 -8.87205 -8.80112 -6.87783 -5.79306 -3.10609 2.40541 2.56278 2.67604 3.18415 3.38719 3.43827 3.46000 4.00108 4.12080 4.44347 4.53335 4.59884 4.66616 4.71325 4.92111 4.95385 5.09485 5.10870 5.20424 5.22975 5.25452 5.30601 5.34497 5.46926 5.50443 5.54639 5.61506 5.67083 5.72309 5.75695 5.80762 5.89927 5.94641 5.98578 6.19597 6.30434 6.31774 6.36483 6.54451 6.62619 6.74554 6.86630 7.20782 7.32309 7.54129 7.55356 7.96533 7.97425 8.21306 9.03331 9.69658 10.59170 11.38308 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.002708 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.629386 B =10338.135128 C =11594.064379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.621 5.621 5 C 0.119 3.881 6 C -0.124 4.124 7 H 0.118 0.882 8 C 0.525 3.475 9 O -0.539 6.539 10 N -0.712 5.712 11 C 0.150 3.850 12 H 0.088 0.912 13 C -0.158 4.158 14 C -0.148 4.148 15 C 0.174 3.826 16 N -0.613 5.613 17 C -0.225 4.225 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.130 3.870 26 C -0.148 4.148 27 C 0.521 3.479 28 O -0.529 6.529 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.401 0.599 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.027 0.973 44 H 0.067 0.933 45 H 0.254 0.746 46 H 0.044 0.956 47 H 0.034 0.966 48 H 0.115 0.885 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.049 12.495 8.287 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.006 3.994 4 N -0.356 5.356 5 C -0.004 4.004 6 C -0.146 4.146 7 H 0.136 0.864 8 C 0.310 3.690 9 O -0.416 6.416 10 N -0.362 5.362 11 C 0.045 3.955 12 H 0.106 0.894 13 C -0.216 4.216 14 C -0.168 4.168 15 C 0.049 3.951 16 N -0.339 5.339 17 C -0.353 4.353 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.003 3.997 26 C -0.188 4.188 27 C 0.309 3.691 28 O -0.405 6.405 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.235 0.765 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.133 0.867 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.394 11.776 8.089 22.509 hybrid contribution 0.866 -0.448 -0.707 1.204 sum -16.528 11.328 7.382 21.354 Atomic orbital electron populations 1.21686 0.94978 1.02131 1.01855 1.21938 0.96263 0.97089 1.03005 1.21444 0.77655 0.97238 1.03095 1.48353 1.06302 1.73636 1.07279 1.21961 0.87868 1.03814 0.86789 1.22249 0.94611 1.02291 0.95447 0.86442 1.19982 0.83400 0.81691 0.83920 1.90713 1.82055 1.38760 1.30070 1.46072 1.05746 1.48424 1.35934 1.21131 0.87054 0.95884 0.91416 0.89379 1.22126 1.01478 1.00344 0.97686 1.23848 0.94020 1.00241 0.98670 1.22228 0.85993 0.89776 0.97147 1.45980 1.08227 1.65722 1.13970 1.19017 0.88033 1.25105 1.03101 0.90243 1.24823 0.96970 1.00395 0.98171 1.69822 1.21404 1.46094 1.19189 0.86145 0.81008 0.80427 0.78476 1.21625 1.21693 1.20559 1.22490 0.94309 0.92599 0.90282 1.22396 0.95480 1.06096 0.94831 1.20786 0.88960 0.74998 0.84387 1.90737 1.78539 1.50176 1.21041 0.92506 0.92330 0.92593 0.91424 0.91497 0.90319 0.89985 0.89848 0.89065 0.76462 0.92779 0.91388 0.92711 0.89378 0.95504 0.91441 0.93614 0.93815 0.94802 0.86693 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.14 -1.22 6.26 -26.72 -0.17 -1.38 16 3 C 0.13 1.06 5.93 -4.04 -0.02 1.03 16 4 N -0.62 -6.14 2.93 -172.41 -0.51 -6.64 16 5 C 0.12 1.03 6.66 -3.12 -0.02 1.01 16 6 C -0.12 -1.05 3.54 -90.14 -0.32 -1.37 16 7 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 8 C 0.53 6.14 7.04 -10.99 -0.08 6.06 16 9 O -0.54 -8.19 15.23 5.55 0.08 -8.11 16 10 N -0.71 -8.16 5.03 -53.80 -0.27 -8.43 16 11 C 0.15 2.08 2.38 -67.93 -0.16 1.92 16 12 H 0.09 1.45 7.42 -51.93 -0.39 1.07 16 13 C -0.16 -1.89 9.31 37.16 0.35 -1.54 16 14 C -0.15 -2.47 3.47 -89.70 -0.31 -2.78 16 15 C 0.17 3.90 6.99 -2.84 -0.02 3.88 16 16 N -0.61 -15.41 3.70 -177.73 -0.66 -16.07 16 17 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.12 11.51 55.49 0.64 -26.48 16 21 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.13 2.51 7.64 -2.97 -0.02 2.49 16 26 C -0.15 -1.44 6.37 -26.74 -0.17 -1.61 16 27 C 0.52 6.39 8.02 -10.86 -0.09 6.30 16 28 O -0.53 -8.54 17.60 5.56 0.10 -8.45 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.95 7.06 -51.93 -0.37 0.58 16 38 H 0.40 3.75 8.60 -40.82 -0.35 3.39 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.81 7.52 -51.93 -0.39 0.41 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 44 H 0.07 1.67 7.37 -51.93 -0.38 1.28 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.65 8.10 -51.93 -0.42 0.22 16 48 H 0.11 1.28 7.89 -51.93 -0.41 0.87 16 49 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -34.85 398.46 -9.13 -43.98 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.57 Total: 0.42 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.92 Total: 6.67 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.79 Total: -57.62 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.18 Total: -16.55 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.85 -9.13 -43.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970494961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.976 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds