Wall clock time and date at job start Fri Apr 10 2020 18:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47010 * 2 1 4 4 N 1.46501 * 109.47304 * 180.02562 * 3 2 1 5 5 C 1.46759 * 124.34670 * 90.00191 * 4 3 2 6 6 C 1.54479 * 105.54972 * 163.02662 * 5 4 3 7 7 H 1.09003 * 110.96837 * 267.24983 * 6 5 4 8 8 C 1.50704 * 110.97228 * 143.52936 * 6 5 4 9 9 O 1.21279 * 119.99477 * 359.97438 * 8 6 5 10 10 N 1.34770 * 120.00055 * 180.02562 * 8 6 5 11 11 C 1.46503 * 120.00252 * 179.97438 * 10 8 6 12 12 H 1.09008 * 109.46584 * 325.00394 * 11 10 8 13 13 C 1.53001 * 109.47278 * 84.99417 * 11 10 8 14 14 C 1.52994 * 109.47304 * 204.99976 * 11 10 8 15 15 C 1.53954 * 113.74078 * 161.99641 * 14 11 10 16 16 N 1.47818 * 86.03293 * 222.08087 * 15 14 11 17 17 C 1.36930 * 134.45528 * 204.64083 * 16 15 14 18 18 H 1.08000 * 120.00273 * 179.87350 * 17 16 15 19 19 C 1.38814 * 120.00097 * 359.86910 * 17 16 15 20 20 N 1.31620 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00489 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47085 * 59.99820 * 21 19 17 23 23 H 1.48497 * 109.47739 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47193 * 300.00539 * 21 19 17 25 25 C 1.47579 * 91.04971 * 24.54997 * 16 15 14 26 26 C 1.54627 * 101.76255 * 25.37058 * 6 5 4 27 27 C 1.34558 * 124.43418 * 269.92648 * 4 3 2 28 28 O 1.21278 * 124.91950 * 0.45419 * 27 4 3 29 29 H 1.08997 * 109.47265 * 59.99556 * 1 2 3 30 30 H 1.09001 * 109.46648 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46560 * 299.99280 * 1 2 3 32 32 H 1.09003 * 109.46560 * 240.00720 * 2 1 3 33 33 H 1.08997 * 109.47790 * 120.00460 * 2 1 3 34 34 H 1.09002 * 109.47172 * 60.00456 * 3 2 1 35 35 H 1.09007 * 109.47572 * 300.00411 * 3 2 1 36 36 H 1.08999 * 110.25008 * 43.98174 * 5 4 3 37 37 H 1.09005 * 110.25237 * 282.07158 * 5 4 3 38 38 H 0.96999 * 120.00304 * 359.97438 * 10 8 6 39 39 H 1.09008 * 109.47298 * 295.79689 * 13 11 10 40 40 H 1.09006 * 109.46652 * 55.78901 * 13 11 10 41 41 H 1.08997 * 109.47369 * 175.79075 * 13 11 10 42 42 H 1.09004 * 112.94330 * 293.58216 * 14 11 10 43 43 H 1.08997 * 113.76888 * 336.34563 * 15 14 11 44 44 H 1.08996 * 113.76821 * 107.74496 * 15 14 11 45 45 H 0.97005 * 120.00438 * 179.97438 * 20 19 17 46 46 H 1.09006 * 113.76613 * 221.14721 * 25 16 15 47 47 H 1.09004 * 113.87340 * 89.76843 * 25 16 15 48 48 H 1.08998 * 110.48329 * 93.88419 * 26 6 5 49 49 H 1.09001 * 110.48320 * 216.39163 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3325 1.4428 -1.2127 6 6 5.7416 1.8773 -0.7520 7 1 5.8684 2.9556 -0.8488 8 6 6.8104 1.1406 -1.5176 9 8 6.4998 0.3307 -2.3653 10 7 8.1111 1.3810 -1.2596 11 6 9.1501 0.6645 -2.0034 12 1 8.8121 -0.3504 -2.2134 13 6 9.4282 1.3920 -3.3203 14 6 10.4313 0.6130 -1.1687 15 6 11.4305 -0.4624 -1.6327 16 7 11.6306 -0.7497 -0.1966 17 6 12.6479 -1.2958 0.5395 18 1 12.5455 -1.3980 1.6098 19 6 13.8107 -1.7183 -0.0899 20 7 13.9353 -1.5943 -1.3943 21 14 15.1988 -2.4627 0.9143 22 1 14.7078 -3.6773 1.6134 23 1 16.3206 -2.8293 0.0129 24 1 15.6719 -1.4728 1.9151 25 6 10.2954 -0.2097 0.1253 26 6 5.7321 1.4523 0.7347 27 6 4.2663 1.4439 1.1089 28 8 3.8392 1.4373 2.2439 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9565 -0.8900 36 1 3.9375 2.1531 -1.9390 37 1 4.3687 0.4429 -1.6451 38 1 8.3594 2.0285 -0.5813 39 1 8.5364 1.3635 -3.9466 40 1 9.6938 2.4288 -3.1135 41 1 10.2523 0.9023 -3.8390 42 1 10.8810 1.5947 -1.0195 43 1 10.9696 -1.2815 -2.1846 44 1 12.3130 -0.0575 -2.1280 45 1 14.7481 -1.8892 -1.8341 46 1 10.2733 0.3965 1.0310 47 1 9.4990 -0.9532 0.0917 48 1 6.1610 0.4569 0.8496 49 1 6.2786 2.1745 1.3413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970494963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:33 Heat of formation + Delta-G solvation = -27.027064 kcal Electronic energy + Delta-G solvation = -27641.761417 eV Core-core repulsion = 23798.194937 eV Total energy + Delta-G solvation = -3843.566480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07316 -39.59972 -38.11659 -36.61770 -35.13423 -34.86988 -32.35199 -31.84361 -30.30596 -27.99356 -27.50454 -26.68541 -24.92122 -24.24314 -23.30671 -22.10916 -21.17136 -20.32045 -19.68802 -19.09623 -17.66766 -17.07464 -16.81877 -16.18307 -16.07065 -15.48785 -15.10662 -14.83909 -14.78412 -14.25053 -14.15270 -13.94836 -13.81815 -13.61983 -13.39555 -13.17966 -13.01331 -12.51489 -12.39010 -12.15911 -12.12727 -11.82777 -11.73010 -11.63543 -11.59851 -11.41951 -11.24457 -11.06538 -10.88800 -10.70729 -10.38897 -10.29161 -10.01748 -9.84795 -9.67065 -9.44347 -9.01738 -8.92737 -8.80269 -6.89346 -5.78057 -3.10204 2.31334 2.49929 2.62134 3.12937 3.39105 3.43323 3.44423 3.94102 4.05394 4.44156 4.47050 4.53301 4.60580 4.65224 4.87101 4.89762 5.05195 5.09405 5.14058 5.14715 5.24651 5.27046 5.36574 5.40895 5.44664 5.51018 5.59778 5.62006 5.67164 5.74563 5.77117 5.88711 5.95358 6.02755 6.21887 6.24066 6.32071 6.40609 6.52917 6.59314 6.74876 6.79075 7.20054 7.33578 7.50426 7.54487 7.88878 7.96949 8.17109 9.03504 9.69803 10.58436 11.39137 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.002366 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.216080 B =11831.443128 C =12536.051519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.621 5.621 5 C 0.117 3.883 6 C -0.125 4.125 7 H 0.117 0.883 8 C 0.524 3.476 9 O -0.537 6.537 10 N -0.713 5.713 11 C 0.150 3.850 12 H 0.088 0.912 13 C -0.158 4.158 14 C -0.147 4.147 15 C 0.176 3.824 16 N -0.612 5.612 17 C -0.224 4.224 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.125 3.875 26 C -0.145 4.145 27 C 0.521 3.479 28 O -0.530 6.530 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.400 0.600 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.254 0.746 46 H 0.041 0.959 47 H 0.032 0.968 48 H 0.112 0.888 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.392 10.781 -2.134 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.006 3.994 4 N -0.355 5.355 5 C -0.006 4.006 6 C -0.147 4.147 7 H 0.135 0.865 8 C 0.309 3.691 9 O -0.414 6.414 10 N -0.363 5.363 11 C 0.045 3.955 12 H 0.106 0.894 13 C -0.216 4.216 14 C -0.167 4.167 15 C 0.050 3.950 16 N -0.338 5.338 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.001 4.001 26 C -0.185 4.185 27 C 0.308 3.692 28 O -0.406 6.406 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.234 0.766 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.130 0.870 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.569 10.038 -2.103 24.790 hybrid contribution 0.936 -0.241 0.730 1.212 sum -21.633 9.796 -1.372 23.787 Atomic orbital electron populations 1.21690 0.94941 1.02151 1.01893 1.21933 0.96297 0.97062 1.02962 1.21451 0.77580 0.97255 1.03143 1.48376 1.06311 1.73558 1.07258 1.21986 0.87849 1.03961 0.86836 1.22252 0.94676 1.02326 0.95401 0.86532 1.19977 0.83473 0.82588 0.83110 1.90717 1.82006 1.34956 1.33763 1.46117 1.05319 1.43924 1.40903 1.21158 0.86732 0.96380 0.91203 0.89389 1.22111 1.01938 1.00500 0.97089 1.23864 0.94710 1.00648 0.97517 1.22232 0.94241 0.91039 0.87510 1.45977 1.11553 1.72772 1.03526 1.18972 0.92315 1.33453 0.90399 0.90356 1.24782 0.98229 1.01600 0.95855 1.69793 1.27454 1.52296 1.07366 0.86201 0.81637 0.79105 0.78821 1.21194 1.21544 1.21083 1.22531 0.89000 0.93682 0.94862 1.22350 0.95450 1.05859 0.94881 1.20819 0.88925 0.75016 0.84397 1.90735 1.78603 1.50247 1.21000 0.92546 0.92316 0.92508 0.91480 0.91484 0.89979 0.90269 0.89846 0.88889 0.76583 0.92788 0.92750 0.90998 0.89292 0.95438 0.90700 0.93564 0.94115 0.95092 0.86971 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.14 -1.11 6.26 -26.73 -0.17 -1.27 16 3 C 0.13 0.97 5.94 -4.04 -0.02 0.95 16 4 N -0.62 -5.64 2.94 -172.37 -0.51 -6.14 16 5 C 0.12 0.94 6.71 -3.12 -0.02 0.91 16 6 C -0.12 -0.96 3.54 -90.14 -0.32 -1.28 16 7 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 8 C 0.52 5.77 7.03 -10.99 -0.08 5.69 16 9 O -0.54 -7.93 15.17 5.56 0.08 -7.85 16 10 N -0.71 -7.68 4.95 -53.80 -0.27 -7.94 16 11 C 0.15 2.08 2.29 -67.93 -0.16 1.92 16 12 H 0.09 1.45 7.49 -51.92 -0.39 1.06 16 13 C -0.16 -2.01 9.46 37.16 0.35 -1.66 16 14 C -0.15 -2.47 3.35 -89.69 -0.30 -2.77 16 15 C 0.18 3.94 6.90 -2.83 -0.02 3.92 16 16 N -0.61 -15.40 3.70 -177.68 -0.66 -16.06 16 17 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.09 11.39 55.49 0.63 -26.46 16 21 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 C 0.13 2.42 8.38 -2.97 -0.02 2.40 16 26 C -0.14 -1.25 6.41 -26.74 -0.17 -1.42 16 27 C 0.52 5.85 8.03 -10.80 -0.09 5.77 16 28 O -0.53 -7.98 17.60 5.56 0.10 -7.88 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 35 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.91 6.96 -51.93 -0.36 0.55 16 38 H 0.40 3.37 8.60 -40.82 -0.35 3.02 16 39 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.96 7.99 -51.93 -0.42 0.55 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 44 H 0.07 1.86 7.17 -51.93 -0.37 1.49 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 48 H 0.11 1.07 7.89 -51.93 -0.41 0.66 16 49 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -34.63 399.17 -9.12 -43.75 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.59 Total: -0.39 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.90 Total: 5.90 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.80 Total: -56.60 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.18 Total: -15.73 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.63 -9.12 -43.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970494963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.721 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds