Wall clock time and date at job start Fri Apr 10 2020 18:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47010 * 2 1 4 4 N 1.46501 * 109.47304 * 180.02562 * 3 2 1 5 5 C 1.46759 * 124.34670 * 90.00191 * 4 3 2 6 6 C 1.54479 * 105.54972 * 163.02662 * 5 4 3 7 7 H 1.09003 * 110.96837 * 267.24983 * 6 5 4 8 8 C 1.50704 * 110.97228 * 143.52936 * 6 5 4 9 9 O 1.21279 * 119.99477 * 359.97438 * 8 6 5 10 10 N 1.34770 * 120.00055 * 180.02562 * 8 6 5 11 11 C 1.46503 * 120.00252 * 179.97438 * 10 8 6 12 12 H 1.09008 * 109.46584 * 325.00394 * 11 10 8 13 13 C 1.53001 * 109.47278 * 84.99417 * 11 10 8 14 14 C 1.52994 * 109.47304 * 204.99976 * 11 10 8 15 15 C 1.53954 * 113.74078 * 161.99641 * 14 11 10 16 16 N 1.47818 * 86.03293 * 222.08087 * 15 14 11 17 17 C 1.36930 * 134.45528 * 204.64083 * 16 15 14 18 18 H 1.08000 * 120.00273 * 179.87350 * 17 16 15 19 19 C 1.38814 * 120.00097 * 359.86910 * 17 16 15 20 20 N 1.31620 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00489 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47085 * 59.99820 * 21 19 17 23 23 H 1.48497 * 109.47739 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47193 * 300.00539 * 21 19 17 25 25 C 1.47579 * 91.04971 * 24.54997 * 16 15 14 26 26 C 1.54627 * 101.76255 * 25.37058 * 6 5 4 27 27 C 1.34558 * 124.43418 * 269.92648 * 4 3 2 28 28 O 1.21278 * 124.91950 * 0.45419 * 27 4 3 29 29 H 1.08997 * 109.47265 * 59.99556 * 1 2 3 30 30 H 1.09001 * 109.46648 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46560 * 299.99280 * 1 2 3 32 32 H 1.09003 * 109.46560 * 240.00720 * 2 1 3 33 33 H 1.08997 * 109.47790 * 120.00460 * 2 1 3 34 34 H 1.09002 * 109.47172 * 60.00456 * 3 2 1 35 35 H 1.09007 * 109.47572 * 300.00411 * 3 2 1 36 36 H 1.08999 * 110.25008 * 43.98174 * 5 4 3 37 37 H 1.09005 * 110.25237 * 282.07158 * 5 4 3 38 38 H 0.96999 * 120.00304 * 359.97438 * 10 8 6 39 39 H 1.09008 * 109.47298 * 295.79689 * 13 11 10 40 40 H 1.09006 * 109.46652 * 55.78901 * 13 11 10 41 41 H 1.08997 * 109.47369 * 175.79075 * 13 11 10 42 42 H 1.09004 * 112.94330 * 293.58216 * 14 11 10 43 43 H 1.08997 * 113.76888 * 336.34563 * 15 14 11 44 44 H 1.08996 * 113.76821 * 107.74496 * 15 14 11 45 45 H 0.97005 * 120.00438 * 179.97438 * 20 19 17 46 46 H 1.09006 * 113.76613 * 221.14721 * 25 16 15 47 47 H 1.09004 * 113.87340 * 89.76843 * 25 16 15 48 48 H 1.08998 * 110.48329 * 93.88419 * 26 6 5 49 49 H 1.09001 * 110.48320 * 216.39163 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3325 1.4428 -1.2127 6 6 5.7416 1.8773 -0.7520 7 1 5.8684 2.9556 -0.8488 8 6 6.8104 1.1406 -1.5176 9 8 6.4998 0.3307 -2.3653 10 7 8.1111 1.3810 -1.2596 11 6 9.1501 0.6645 -2.0034 12 1 8.8121 -0.3504 -2.2134 13 6 9.4282 1.3920 -3.3203 14 6 10.4313 0.6130 -1.1687 15 6 11.4305 -0.4624 -1.6327 16 7 11.6306 -0.7497 -0.1966 17 6 12.6479 -1.2958 0.5395 18 1 12.5455 -1.3980 1.6098 19 6 13.8107 -1.7183 -0.0899 20 7 13.9353 -1.5943 -1.3943 21 14 15.1988 -2.4627 0.9143 22 1 14.7078 -3.6773 1.6134 23 1 16.3206 -2.8293 0.0129 24 1 15.6719 -1.4728 1.9151 25 6 10.2954 -0.2097 0.1253 26 6 5.7321 1.4523 0.7347 27 6 4.2663 1.4439 1.1089 28 8 3.8392 1.4373 2.2439 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9565 -0.8900 36 1 3.9375 2.1531 -1.9390 37 1 4.3687 0.4429 -1.6451 38 1 8.3594 2.0285 -0.5813 39 1 8.5364 1.3635 -3.9466 40 1 9.6938 2.4288 -3.1135 41 1 10.2523 0.9023 -3.8390 42 1 10.8810 1.5947 -1.0195 43 1 10.9696 -1.2815 -2.1846 44 1 12.3130 -0.0575 -2.1280 45 1 14.7481 -1.8892 -1.8341 46 1 10.2733 0.3965 1.0310 47 1 9.4990 -0.9532 0.0917 48 1 6.1610 0.4569 0.8496 49 1 6.2786 2.1745 1.3413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970494963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:32 Heat of formation + Delta-G solvation = -50.295656 kcal Electronic energy + Delta-G solvation = -27642.770419 eV Core-core repulsion = 23798.194937 eV Total energy + Delta-G solvation = -3844.575482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89070 -40.67283 -39.56349 -37.50500 -36.15847 -35.75246 -34.14222 -32.79117 -31.39625 -29.30776 -28.72599 -27.33755 -26.52634 -25.72999 -24.40735 -22.74502 -22.50169 -21.31910 -20.62564 -20.35326 -18.78550 -18.50653 -17.82547 -17.23788 -16.97273 -16.79990 -16.36747 -15.94426 -15.80587 -15.55652 -15.31198 -14.83264 -14.78127 -14.73502 -14.57273 -14.07912 -14.00492 -13.74734 -13.34397 -13.24157 -13.08172 -13.05434 -12.93202 -12.76488 -12.63356 -12.51330 -12.42636 -12.33880 -12.19994 -11.99206 -11.77974 -11.67872 -11.54310 -11.19743 -11.09521 -10.85046 -10.68651 -9.99722 -9.74538 -8.90829 -7.90187 -5.23211 1.45361 1.46843 1.48471 1.54579 1.63201 1.88665 2.24522 2.47917 3.20916 3.30333 3.36895 3.41666 3.67832 3.88606 3.89782 4.00039 4.02019 4.03964 4.21680 4.32566 4.33560 4.50383 4.51373 4.55235 4.62146 4.63778 4.67354 4.80611 4.81461 4.86382 4.89593 4.91298 4.98166 5.01238 5.13677 5.15390 5.16056 5.26999 5.31778 5.36982 5.55561 5.56716 5.59693 5.69255 5.95718 6.04314 6.64461 6.93008 7.07209 7.31480 7.61769 8.57522 9.26552 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.002366 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.216080 B =11831.443128 C =12536.051519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.616 5.616 5 C 0.116 3.884 6 C -0.107 4.107 7 H 0.156 0.844 8 C 0.527 3.473 9 O -0.576 6.576 10 N -0.703 5.703 11 C 0.163 3.837 12 H 0.060 0.940 13 C -0.152 4.152 14 C -0.107 4.107 15 C 0.169 3.831 16 N -0.646 5.646 17 C -0.236 4.236 18 H 0.082 0.918 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.978 3.022 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.127 3.873 26 C -0.140 4.140 27 C 0.511 3.489 28 O -0.577 6.577 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.417 0.583 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.010 0.990 44 H 0.045 0.955 45 H 0.249 0.751 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.101 0.899 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.499 12.982 -1.938 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.348 5.348 5 C -0.007 4.007 6 C -0.129 4.129 7 H 0.174 0.826 8 C 0.313 3.687 9 O -0.455 6.455 10 N -0.354 5.354 11 C 0.057 3.943 12 H 0.079 0.921 13 C -0.210 4.210 14 C -0.127 4.127 15 C 0.043 3.957 16 N -0.372 5.372 17 C -0.364 4.364 18 H 0.100 0.900 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.002 3.998 26 C -0.180 4.180 27 C 0.300 3.700 28 O -0.457 6.457 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.028 0.972 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.119 0.881 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.714 12.271 -1.902 26.769 hybrid contribution 1.194 -0.974 0.651 1.673 sum -22.520 11.297 -1.251 25.226 Atomic orbital electron populations 1.21666 0.93450 1.02449 1.02712 1.21886 0.97615 0.96973 1.01477 1.21617 0.76879 0.97210 1.04165 1.48512 1.07004 1.72157 1.07147 1.22070 0.88106 1.03830 0.86686 1.22220 0.92973 1.03920 0.93770 0.82598 1.20450 0.83730 0.81912 0.82588 1.90720 1.82532 1.36628 1.35663 1.45893 1.04726 1.43799 1.40966 1.20729 0.86032 0.95900 0.91644 0.92141 1.22040 1.01588 1.01342 0.96019 1.23438 0.94443 0.99298 0.95526 1.22147 0.94697 0.92447 0.86392 1.46438 1.13269 1.72775 1.04743 1.19382 0.93302 1.32700 0.91043 0.90020 1.25623 1.00781 1.02786 0.96953 1.69986 1.27735 1.53657 1.08837 0.85169 0.78452 0.78426 0.77391 1.20716 1.22036 1.19936 1.22691 0.86269 0.93847 0.96971 1.22346 0.93842 1.06036 0.95795 1.21271 0.90196 0.74382 0.84115 1.90707 1.79551 1.52614 1.22828 0.90884 0.92329 0.92491 0.91623 0.94247 0.90826 0.87286 0.86985 0.90796 0.74637 0.92570 0.90555 0.92276 0.87534 0.97228 0.93641 0.94247 0.91934 0.95050 0.88058 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.14 -2.10 6.26 30.59 0.19 -1.91 16 3 C 0.12 1.68 5.94 86.38 0.51 2.19 16 4 N -0.62 -10.14 2.94 -817.78 -2.40 -12.54 16 5 C 0.12 1.54 6.71 86.83 0.58 2.13 16 6 C -0.11 -1.28 3.54 -10.48 -0.04 -1.32 16 7 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 8 C 0.53 10.25 7.03 87.66 0.62 10.87 16 9 O -0.58 -16.26 15.17 -3.03 -0.05 -16.30 16 10 N -0.70 -13.07 4.95 -442.53 -2.19 -15.26 16 11 C 0.16 4.27 2.29 44.99 0.10 4.38 16 12 H 0.06 1.98 7.49 -2.38 -0.02 1.96 16 13 C -0.15 -3.57 9.46 71.98 0.68 -2.89 16 14 C -0.11 -3.45 3.35 -10.13 -0.03 -3.49 16 15 C 0.17 7.76 6.90 86.44 0.60 8.36 16 16 N -0.65 -32.65 3.70 -716.06 -2.65 -35.30 16 17 C -0.24 -13.24 10.70 84.04 0.90 -12.34 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.95 -57.52 11.39 21.65 0.25 -57.27 16 21 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 C 0.13 4.74 8.38 86.48 0.72 5.46 16 26 C -0.14 -2.08 6.41 30.59 0.20 -1.88 16 27 C 0.51 10.93 8.03 87.88 0.71 11.64 16 28 O -0.58 -17.43 17.60 -3.02 -0.05 -17.48 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.16 7.94 -2.39 -0.02 1.15 16 35 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.34 6.96 -2.38 -0.02 1.32 16 38 H 0.42 5.25 8.60 -92.71 -0.80 4.45 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.06 1.55 7.99 -2.39 -0.02 1.53 16 42 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 43 H 0.01 0.48 8.03 -2.39 -0.02 0.46 16 44 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16 45 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 46 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.03 1.20 8.10 -2.38 -0.02 1.18 16 48 H 0.10 1.78 7.89 -2.39 -0.02 1.76 16 49 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.60 399.17 1.98 -76.62 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.13 Total: 12.79 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.92 Total: 16.89 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -7.00 Total: -120.37 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.10 Total: -33.79 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -78.60 1.98 -76.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970494963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.328 kcal (2) G-P(sol) polarization free energy of solvation -78.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds