Wall clock time and date at job start Fri Apr 10 2020 18:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46662 * 2 1 4 4 N 1.46490 * 109.47495 * 120.00707 * 2 1 3 5 5 C 1.46766 * 124.35365 * 120.00368 * 4 2 1 6 6 C 1.54475 * 105.47638 * 162.96398 * 5 4 2 7 7 H 1.08997 * 110.97245 * 143.56606 * 6 5 4 8 8 C 1.50699 * 110.96743 * 267.29786 * 6 5 4 9 9 O 1.21284 * 119.99859 * 356.90538 * 8 6 5 10 10 N 1.34772 * 120.00405 * 176.91150 * 8 6 5 11 11 C 1.47027 * 125.64609 * 359.95591 * 10 8 6 12 12 C 1.54324 * 107.27240 * 181.09698 * 11 10 8 13 13 C 1.55157 * 102.94216 * 22.18963 * 12 11 10 14 14 H 1.09000 * 111.03859 * 82.58659 * 13 12 11 15 15 N 1.46504 * 111.00490 * 206.42728 * 13 12 11 16 16 C 1.46500 * 119.99801 * 52.19474 * 15 13 12 17 17 C 1.36935 * 119.99884 * 232.47631 * 15 13 12 18 18 H 1.08001 * 120.00270 * 21.47534 * 17 15 13 19 19 C 1.38815 * 119.99913 * 201.48145 * 17 15 13 20 20 N 1.31619 * 120.00020 * 13.71187 * 19 17 15 21 21 Si 1.86801 * 120.00079 * 193.72008 * 19 17 15 22 22 H 1.48499 * 109.46921 * 59.99557 * 21 19 17 23 23 H 1.48495 * 109.47059 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47076 * 299.99861 * 21 19 17 25 25 C 1.47423 * 125.65211 * 179.97438 * 10 8 6 26 26 C 1.54626 * 101.80046 * 25.42878 * 6 5 4 27 27 C 1.34423 * 124.34761 * 299.97632 * 4 2 1 28 28 O 1.21279 * 124.94247 * 0.45851 * 27 4 2 29 29 H 1.08998 * 109.47704 * 59.99426 * 1 2 3 30 30 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47392 * 299.99229 * 1 2 3 32 32 H 1.09004 * 109.46957 * 240.00792 * 2 1 3 33 33 H 1.09006 * 109.47072 * 180.02562 * 3 2 1 34 34 H 1.08987 * 109.47700 * 300.00307 * 3 2 1 35 35 H 1.09004 * 109.46788 * 60.00688 * 3 2 1 36 36 H 1.08996 * 110.24332 * 43.95898 * 5 4 2 37 37 H 1.09003 * 110.31521 * 282.00084 * 5 4 2 38 38 H 1.09001 * 109.88303 * 300.51045 * 11 10 8 39 39 H 1.08999 * 109.88621 * 61.67737 * 11 10 8 40 40 H 1.09007 * 110.71904 * 263.83116 * 12 11 10 41 41 H 1.08998 * 110.72183 * 140.55512 * 12 11 10 42 42 H 1.09003 * 109.46841 * 94.51063 * 16 15 13 43 43 H 1.08998 * 109.46856 * 214.50187 * 16 15 13 44 44 H 1.08998 * 109.47496 * 334.49967 * 16 15 13 45 45 H 0.97003 * 120.00019 * 180.02562 * 20 19 17 46 46 H 1.08995 * 110.36370 * 37.00076 * 25 10 8 47 47 H 1.08996 * 110.46211 * 274.72173 * 25 10 8 48 48 H 1.09007 * 110.48713 * 93.86332 * 26 6 5 49 49 H 1.09005 * 110.49066 * 216.50814 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8657 -1.8888 1.1724 6 6 3.4729 -1.9921 2.5891 7 1 3.5575 -3.0327 2.9024 8 6 4.8109 -1.3017 2.6540 9 8 5.2903 -0.8131 1.6528 10 7 5.4748 -1.2274 3.8245 11 6 5.0114 -1.7733 5.1086 12 6 6.0803 -1.4266 6.1664 13 6 6.8152 -0.2153 5.5338 14 1 6.2728 0.7118 5.7192 15 7 8.1924 -0.1219 6.0245 16 6 9.0759 -1.2884 5.9539 17 6 8.6521 1.0541 6.5545 18 1 7.9533 1.7859 6.9320 19 6 10.0163 1.3057 6.6063 20 7 10.8501 0.5575 5.9155 21 14 10.6686 2.7060 7.6565 22 1 10.2916 2.4782 9.0747 23 1 12.1479 2.7637 7.5412 24 1 10.0847 3.9889 7.1890 25 6 6.7857 -0.5849 4.0295 26 6 2.4215 -1.2420 3.4393 27 6 1.7484 -0.3082 2.4561 28 8 1.0646 0.6458 2.7610 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8898 35 1 1.6766 1.9563 0.8901 36 1 3.6563 -1.7771 0.4304 37 1 2.2659 -2.7723 0.9538 38 1 4.0587 -1.3199 5.3820 39 1 4.9014 -2.8551 5.0335 40 1 6.7661 -2.2617 6.3097 41 1 5.6124 -1.1443 7.1094 42 1 9.6664 -1.2420 5.0388 43 1 9.7422 -1.2922 6.8164 44 1 8.4764 -2.1988 5.9538 45 1 11.8035 0.7330 5.9520 46 1 6.8681 0.3128 3.4167 47 1 7.5917 -1.2797 3.7935 48 1 1.6982 -1.9426 3.8567 49 1 2.9071 -0.6751 4.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971632520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:03 Heat of formation + Delta-G solvation = -34.393833 kcal Electronic energy + Delta-G solvation = -28758.883247 eV Core-core repulsion = 24914.997319 eV Total energy + Delta-G solvation = -3843.885928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.14149 -39.46821 -37.58142 -36.35306 -35.12893 -34.82589 -31.81081 -30.49553 -29.73146 -27.97332 -27.81793 -27.33650 -26.09167 -24.44822 -22.70885 -22.58593 -22.04927 -19.39133 -19.11822 -19.05442 -17.44275 -17.08617 -16.80218 -16.04986 -15.97510 -15.44323 -14.88879 -14.71649 -14.36381 -14.20450 -13.85341 -13.76262 -13.46473 -13.41948 -12.99876 -12.91097 -12.79902 -12.48475 -12.33879 -12.27434 -12.10878 -12.01288 -11.83041 -11.72309 -11.43814 -11.40670 -11.27421 -10.93355 -10.82975 -10.56044 -10.46579 -10.30472 -9.93789 -9.86172 -9.71503 -9.66872 -8.85813 -8.62503 -8.39220 -6.86333 -5.79670 -3.25800 2.46867 2.65609 2.80789 3.07735 3.36878 3.42259 3.43115 4.05532 4.11771 4.35170 4.44904 4.61488 4.74647 4.86253 4.92686 4.98032 5.03229 5.17832 5.19476 5.28335 5.30536 5.36268 5.44437 5.46894 5.54739 5.59342 5.60600 5.63476 5.74924 5.75032 5.86745 5.95827 5.98749 6.15611 6.23892 6.32895 6.45971 6.48913 6.57858 6.74811 6.82885 7.00134 7.29988 7.65069 7.71658 7.75222 8.06881 8.24673 8.31842 9.15392 9.77673 10.25393 11.25261 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.002857 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.678411 B = 9798.133077 C =10162.310567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.169 4.169 4 N -0.611 5.611 5 C 0.116 3.884 6 C -0.121 4.121 7 H 0.122 0.878 8 C 0.530 3.470 9 O -0.538 6.538 10 N -0.610 5.610 11 C 0.099 3.901 12 C -0.155 4.155 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.584 5.584 16 C 0.159 3.841 17 C -0.263 4.263 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.905 5.905 21 Si 0.907 3.093 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.086 3.914 26 C -0.151 4.151 27 C 0.520 3.480 28 O -0.529 6.529 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.046 0.954 44 H 0.003 0.997 45 H 0.254 0.746 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.114 0.886 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.690 -9.516 -8.026 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.227 4.227 4 N -0.345 5.345 5 C -0.007 4.007 6 C -0.143 4.143 7 H 0.140 0.860 8 C 0.317 3.683 9 O -0.415 6.415 10 N -0.343 5.343 11 C -0.024 4.024 12 C -0.195 4.195 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.304 5.304 16 C 0.014 3.986 17 C -0.392 4.392 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.737 3.263 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.208 1.208 25 C -0.038 4.038 26 C -0.191 4.191 27 C 0.308 3.692 28 O -0.405 6.405 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.132 0.868 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.603 -8.694 -8.538 22.239 hybrid contribution 0.607 0.533 0.489 0.944 sum -17.996 -8.162 -8.049 21.337 Atomic orbital electron populations 1.22183 0.94791 1.02139 1.03299 1.20914 0.94116 0.93356 0.86342 1.22182 1.01991 0.95540 1.02995 1.48361 1.51078 1.28917 1.06165 1.22011 0.94198 0.87508 0.96986 1.22272 0.93042 1.01960 0.97027 0.85964 1.19783 0.85711 0.80405 0.82374 1.90706 1.68909 1.47799 1.34109 1.48497 1.21710 1.56291 1.07818 1.22177 0.98440 0.98047 0.83748 1.23206 0.97290 1.01599 0.97365 1.21458 0.87708 0.95597 0.89031 0.90430 1.43851 1.07234 1.09901 1.69434 1.20839 0.91478 0.85031 1.01208 1.19192 0.90847 0.96030 1.33122 0.91170 1.25023 0.96703 0.98496 0.99162 1.70068 1.02481 1.40987 1.41347 0.86293 0.77721 0.81929 0.80344 1.20986 1.21596 1.20833 1.23185 0.82564 0.97438 1.00626 1.22504 0.98370 0.99586 0.98638 1.20739 0.80071 0.84652 0.83748 1.90695 1.39688 1.28676 1.81468 0.91522 0.92632 0.90994 0.89455 0.91951 0.91633 0.91128 0.88467 0.90365 0.91531 0.91805 0.90184 0.90436 0.95150 0.93552 0.97861 0.93540 0.91004 0.91337 0.86778 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.20 37.16 0.34 -1.14 16 2 C 0.15 1.55 3.47 -67.94 -0.24 1.31 16 3 C -0.17 -1.92 9.20 37.16 0.34 -1.58 16 4 N -0.61 -6.77 2.83 -164.81 -0.47 -7.23 16 5 C 0.12 1.06 6.66 -3.12 -0.02 1.04 16 6 C -0.12 -1.16 2.97 -90.14 -0.27 -1.42 16 7 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 8 C 0.53 7.72 7.18 -10.99 -0.08 7.64 16 9 O -0.54 -9.92 15.77 5.55 0.09 -9.83 16 10 N -0.61 -9.09 3.29 -170.51 -0.56 -9.65 16 11 C 0.10 1.16 6.10 -3.06 -0.02 1.14 16 12 C -0.15 -2.26 6.48 -24.90 -0.16 -2.42 16 13 C 0.17 3.32 3.55 -65.77 -0.23 3.08 16 14 H 0.08 1.53 7.93 -51.93 -0.41 1.12 16 15 N -0.58 -13.89 2.96 -171.01 -0.51 -14.39 16 16 C 0.16 3.69 7.87 59.85 0.47 4.17 16 17 C -0.26 -6.99 9.63 -15.06 -0.15 -7.13 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 20 N -0.90 -25.83 10.68 55.49 0.59 -25.24 16 21 Si 0.91 21.51 29.58 -169.99 -5.03 16.49 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.09 1.62 6.51 -2.52 -0.02 1.60 16 26 C -0.15 -1.45 5.86 -26.69 -0.16 -1.61 16 27 C 0.52 6.71 7.41 -10.81 -0.08 6.63 16 28 O -0.53 -8.57 15.12 5.56 0.08 -8.49 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.82 6.77 -51.93 -0.35 0.46 16 32 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.59 8.14 -51.94 -0.42 0.17 16 35 H 0.07 0.97 6.80 -51.93 -0.35 0.61 16 36 H 0.10 1.02 6.98 -51.93 -0.36 0.66 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.66 5.87 -51.93 -0.31 0.36 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.22 5.97 -51.93 -0.31 0.91 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.78 7.42 -51.93 -0.39 0.39 16 43 H 0.05 1.17 7.21 -51.93 -0.37 0.79 16 44 H 0.00 0.06 5.96 -51.93 -0.31 -0.25 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 47 H 0.07 1.38 7.31 -51.93 -0.38 1.00 16 48 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.11 1.18 5.62 -51.93 -0.29 0.88 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -33.18 378.08 -8.47 -41.65 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.02 Total: -0.35 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -0.35 Total: 11.34 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.94 Total: -56.51 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.17 Total: -18.32 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.18 -8.47 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971632520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.257 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds