Wall clock time and date at job start Fri Apr 10 2020 18:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46662 * 2 1 4 4 N 1.46490 * 109.47495 * 120.00707 * 2 1 3 5 5 C 1.46766 * 124.35365 * 120.00368 * 4 2 1 6 6 C 1.54475 * 105.47638 * 162.96398 * 5 4 2 7 7 H 1.08997 * 110.97245 * 143.56606 * 6 5 4 8 8 C 1.50699 * 110.96743 * 267.29786 * 6 5 4 9 9 O 1.21284 * 119.99859 * 356.90538 * 8 6 5 10 10 N 1.34772 * 120.00405 * 176.91150 * 8 6 5 11 11 C 1.47027 * 125.64609 * 359.95591 * 10 8 6 12 12 C 1.54324 * 107.27240 * 181.09698 * 11 10 8 13 13 C 1.55157 * 102.94216 * 22.18963 * 12 11 10 14 14 H 1.09000 * 111.03859 * 82.58659 * 13 12 11 15 15 N 1.46504 * 111.00490 * 206.42728 * 13 12 11 16 16 C 1.46500 * 119.99801 * 52.19474 * 15 13 12 17 17 C 1.36935 * 119.99884 * 232.47631 * 15 13 12 18 18 H 1.08001 * 120.00270 * 21.47534 * 17 15 13 19 19 C 1.38815 * 119.99913 * 201.48145 * 17 15 13 20 20 N 1.31619 * 120.00020 * 13.71187 * 19 17 15 21 21 Si 1.86801 * 120.00079 * 193.72008 * 19 17 15 22 22 H 1.48499 * 109.46921 * 59.99557 * 21 19 17 23 23 H 1.48495 * 109.47059 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47076 * 299.99861 * 21 19 17 25 25 C 1.47423 * 125.65211 * 179.97438 * 10 8 6 26 26 C 1.54626 * 101.80046 * 25.42878 * 6 5 4 27 27 C 1.34423 * 124.34761 * 299.97632 * 4 2 1 28 28 O 1.21279 * 124.94247 * 0.45851 * 27 4 2 29 29 H 1.08998 * 109.47704 * 59.99426 * 1 2 3 30 30 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47392 * 299.99229 * 1 2 3 32 32 H 1.09004 * 109.46957 * 240.00792 * 2 1 3 33 33 H 1.09006 * 109.47072 * 180.02562 * 3 2 1 34 34 H 1.08987 * 109.47700 * 300.00307 * 3 2 1 35 35 H 1.09004 * 109.46788 * 60.00688 * 3 2 1 36 36 H 1.08996 * 110.24332 * 43.95898 * 5 4 2 37 37 H 1.09003 * 110.31521 * 282.00084 * 5 4 2 38 38 H 1.09001 * 109.88303 * 300.51045 * 11 10 8 39 39 H 1.08999 * 109.88621 * 61.67737 * 11 10 8 40 40 H 1.09007 * 110.71904 * 263.83116 * 12 11 10 41 41 H 1.08998 * 110.72183 * 140.55512 * 12 11 10 42 42 H 1.09003 * 109.46841 * 94.51063 * 16 15 13 43 43 H 1.08998 * 109.46856 * 214.50187 * 16 15 13 44 44 H 1.08998 * 109.47496 * 334.49967 * 16 15 13 45 45 H 0.97003 * 120.00019 * 180.02562 * 20 19 17 46 46 H 1.08995 * 110.36370 * 37.00076 * 25 10 8 47 47 H 1.08996 * 110.46211 * 274.72173 * 25 10 8 48 48 H 1.09007 * 110.48713 * 93.86332 * 26 6 5 49 49 H 1.09005 * 110.49066 * 216.50814 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8657 -1.8888 1.1724 6 6 3.4729 -1.9921 2.5891 7 1 3.5575 -3.0327 2.9024 8 6 4.8109 -1.3017 2.6540 9 8 5.2903 -0.8131 1.6528 10 7 5.4748 -1.2274 3.8245 11 6 5.0114 -1.7733 5.1086 12 6 6.0803 -1.4266 6.1664 13 6 6.8152 -0.2153 5.5338 14 1 6.2728 0.7118 5.7192 15 7 8.1924 -0.1219 6.0245 16 6 9.0759 -1.2884 5.9539 17 6 8.6521 1.0541 6.5545 18 1 7.9533 1.7859 6.9320 19 6 10.0163 1.3057 6.6063 20 7 10.8501 0.5575 5.9155 21 14 10.6686 2.7060 7.6565 22 1 10.2916 2.4782 9.0747 23 1 12.1479 2.7637 7.5412 24 1 10.0847 3.9889 7.1890 25 6 6.7857 -0.5849 4.0295 26 6 2.4215 -1.2420 3.4393 27 6 1.7484 -0.3082 2.4561 28 8 1.0646 0.6458 2.7610 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8898 35 1 1.6766 1.9563 0.8901 36 1 3.6563 -1.7771 0.4304 37 1 2.2659 -2.7723 0.9538 38 1 4.0587 -1.3199 5.3820 39 1 4.9014 -2.8551 5.0335 40 1 6.7661 -2.2617 6.3097 41 1 5.6124 -1.1443 7.1094 42 1 9.6664 -1.2420 5.0388 43 1 9.7422 -1.2922 6.8164 44 1 8.4764 -2.1988 5.9538 45 1 11.8035 0.7330 5.9520 46 1 6.8681 0.3128 3.4167 47 1 7.5917 -1.2797 3.7935 48 1 1.6982 -1.9426 3.8567 49 1 2.9071 -0.6751 4.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971632520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:01 Heat of formation + Delta-G solvation = -56.503559 kcal Electronic energy + Delta-G solvation = -28759.841996 eV Core-core repulsion = 24914.997319 eV Total energy + Delta-G solvation = -3844.844677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.07716 -40.62571 -38.94246 -37.34872 -36.58381 -35.91563 -33.52196 -31.65548 -30.97649 -29.31520 -28.68225 -28.15960 -28.06230 -25.77848 -24.19890 -23.50994 -23.03648 -20.96623 -20.18431 -19.95414 -18.97813 -18.42264 -17.66655 -17.50173 -17.06550 -16.71310 -16.20087 -15.93664 -15.59927 -15.24371 -15.05811 -14.88147 -14.70071 -14.55574 -14.39171 -14.14444 -13.99356 -13.73506 -13.51034 -13.40133 -13.21385 -13.09575 -12.84214 -12.76584 -12.66584 -12.55726 -12.41667 -12.39442 -12.24846 -12.18908 -12.10558 -12.01801 -11.80728 -11.37759 -10.87453 -10.65230 -10.63771 -9.69829 -9.65858 -8.82198 -7.86179 -5.34067 1.46233 1.47542 1.53222 1.54420 1.58174 1.91078 2.06794 2.49841 3.24177 3.27192 3.34378 3.45633 3.56910 3.83257 3.93415 3.95204 4.06336 4.08033 4.18036 4.25981 4.31793 4.42767 4.46418 4.57578 4.62992 4.64344 4.69192 4.76476 4.79697 4.80396 4.84779 4.86204 4.89372 4.96916 5.04798 5.17368 5.21344 5.23566 5.28127 5.32998 5.44949 5.62244 5.67888 5.72133 6.17753 6.29158 6.57603 7.09975 7.12792 7.17152 7.83243 8.25491 9.16642 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020771 B = 0.002857 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.678411 B = 9798.133077 C =10162.310567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 C -0.164 4.164 4 N -0.613 5.613 5 C 0.114 3.886 6 C -0.106 4.106 7 H 0.174 0.826 8 C 0.521 3.479 9 O -0.588 6.588 10 N -0.611 5.611 11 C 0.102 3.898 12 C -0.141 4.141 13 C 0.163 3.837 14 H 0.066 0.934 15 N -0.601 5.601 16 C 0.176 3.824 17 C -0.269 4.269 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.279 1.279 25 C 0.099 3.901 26 C -0.141 4.141 27 C 0.502 3.498 28 O -0.575 6.575 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.111 0.889 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.094 0.906 42 H -0.004 1.004 43 H 0.019 0.981 44 H 0.042 0.958 45 H 0.249 0.751 46 H 0.032 0.968 47 H 0.050 0.950 48 H 0.159 0.841 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.529 -12.214 -7.551 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.346 5.346 5 C -0.009 4.009 6 C -0.127 4.127 7 H 0.191 0.809 8 C 0.311 3.689 9 O -0.468 6.468 10 N -0.343 5.343 11 C -0.020 4.020 12 C -0.180 4.180 13 C 0.054 3.946 14 H 0.085 0.915 15 N -0.322 5.322 16 C 0.032 3.968 17 C -0.399 4.399 18 H 0.090 0.910 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.797 3.203 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.205 1.205 25 C -0.027 4.027 26 C -0.181 4.181 27 C 0.291 3.709 28 O -0.455 6.455 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.143 0.857 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.015 0.985 43 H 0.038 0.962 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.176 0.824 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.493 -11.434 -8.060 25.645 hybrid contribution 1.447 1.414 0.247 2.038 sum -20.046 -10.020 -7.813 23.734 Atomic orbital electron populations 1.22084 0.93681 1.02905 1.02706 1.21097 0.95011 0.92338 0.87088 1.22134 1.00273 0.97189 1.02646 1.48575 1.50622 1.29412 1.06030 1.22253 0.94148 0.88157 0.96313 1.22370 0.89115 1.03638 0.97547 0.80913 1.20859 0.87188 0.79667 0.81203 1.90693 1.70481 1.49789 1.35861 1.48553 1.20145 1.56088 1.09561 1.22429 0.98067 1.00740 0.80734 1.23075 0.97525 0.98620 0.98822 1.21625 0.85782 0.97599 0.89599 0.91550 1.44032 1.08926 1.09236 1.70009 1.20542 0.91378 0.86607 0.98286 1.19545 0.91101 0.96847 1.32418 0.91012 1.25779 0.97118 1.01072 1.00688 1.70240 1.02206 1.42789 1.43069 0.85314 0.76569 0.79250 0.79135 1.19984 1.22127 1.20548 1.22656 0.84728 0.95776 0.99565 1.22559 0.98710 0.99479 0.97369 1.21440 0.79815 0.84627 0.84979 1.90671 1.41898 1.30690 1.82285 0.89834 0.91104 0.93825 0.87122 0.94357 0.89414 0.94036 0.90212 0.85747 0.88772 0.87470 0.90326 0.88721 0.98523 0.96176 0.93950 0.94215 0.94963 0.93174 0.82367 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.20 71.98 0.66 -1.86 16 2 C 0.15 2.74 3.47 44.99 0.16 2.90 16 3 C -0.16 -3.85 9.20 71.98 0.66 -3.18 16 4 N -0.61 -12.40 2.83 -793.92 -2.25 -14.65 16 5 C 0.11 1.65 6.66 86.83 0.58 2.23 16 6 C -0.11 -1.54 2.97 -10.49 -0.03 -1.57 16 7 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 8 C 0.52 14.28 7.18 87.66 0.63 14.90 16 9 O -0.59 -22.00 15.77 -3.04 -0.05 -22.05 16 10 N -0.61 -17.12 3.29 -811.76 -2.67 -19.79 16 11 C 0.10 1.92 6.10 86.73 0.53 2.45 16 12 C -0.14 -3.70 6.48 31.78 0.21 -3.50 16 13 C 0.16 6.25 3.55 46.39 0.16 6.41 16 14 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 15 N -0.60 -29.12 2.96 -694.97 -2.06 -31.18 16 16 C 0.18 8.39 7.87 127.77 1.01 9.40 16 17 C -0.27 -14.63 9.63 84.03 0.81 -13.82 16 18 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 19 C -0.05 -2.87 5.08 84.86 0.43 -2.43 16 20 N -0.94 -55.55 10.68 21.65 0.23 -55.32 16 21 Si 0.97 45.18 29.58 68.60 2.03 47.20 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 C 0.10 3.79 6.51 86.86 0.57 4.36 16 26 C -0.14 -2.14 5.86 30.62 0.18 -1.96 16 27 C 0.50 12.17 7.41 87.93 0.65 12.82 16 28 O -0.58 -18.77 15.12 -3.03 -0.05 -18.82 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.97 6.77 -2.39 -0.02 0.96 16 32 H 0.11 1.55 8.07 -2.39 -0.02 1.53 16 33 H 0.04 1.04 8.14 -2.38 -0.02 1.03 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.20 6.80 -2.39 -0.02 1.19 16 36 H 0.08 1.51 6.98 -2.39 -0.02 1.50 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.36 5.87 -2.39 -0.01 1.34 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 2.12 5.97 -2.38 -0.01 2.10 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 43 H 0.02 1.02 7.21 -2.39 -0.02 1.01 16 44 H 0.04 1.64 5.96 -2.39 -0.01 1.63 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 46 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 47 H 0.05 2.09 7.31 -2.39 -0.02 2.08 16 48 H 0.16 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.10 1.78 5.62 -2.38 -0.01 1.77 16 Total: -1.00 -80.60 378.08 3.33 -77.27 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.94 Total: 10.19 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 7.20 Total: 27.15 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -6.74 Total: -120.93 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.09 Total: -40.87 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -80.60 3.33 -77.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971632520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.763 kcal (2) G-P(sol) polarization free energy of solvation -80.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds