Wall clock time and date at job start Fri Apr 10 2020 18:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 N 1.46506 * 109.47101 * 120.00100 * 2 1 3 5 5 C 1.46760 * 124.34691 * 119.99712 * 4 2 1 6 6 C 1.54480 * 105.47215 * 196.99532 * 5 4 2 7 7 H 1.08993 * 110.97085 * 92.70398 * 6 5 4 8 8 C 1.50702 * 110.97118 * 216.43277 * 6 5 4 9 9 O 1.21277 * 119.99911 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00204 * 179.97438 * 8 6 5 11 11 C 1.47433 * 125.64754 * 0.02574 * 10 8 6 12 12 C 1.54907 * 104.82831 * 204.09075 * 11 10 8 13 13 C 1.55154 * 101.58555 * 322.98853 * 12 11 10 14 14 H 1.09005 * 110.71895 * 276.96468 * 13 12 11 15 15 N 1.46493 * 110.72297 * 153.86898 * 13 12 11 16 16 C 1.46501 * 119.99912 * 301.45810 * 15 13 12 17 17 C 1.36932 * 120.00561 * 121.45118 * 15 13 12 18 18 H 1.08006 * 119.99537 * 21.92599 * 17 15 13 19 19 C 1.38809 * 120.00475 * 201.92520 * 17 15 13 20 20 N 1.31615 * 120.00110 * 11.03061 * 19 17 15 21 21 Si 1.86802 * 120.00008 * 191.02678 * 19 17 15 22 22 H 1.48497 * 109.47205 * 89.99977 * 21 19 17 23 23 H 1.48507 * 109.47231 * 210.00372 * 21 19 17 24 24 H 1.48497 * 109.47446 * 330.00003 * 21 19 17 25 25 C 1.47023 * 125.65150 * 179.71326 * 10 8 6 26 26 C 1.54788 * 101.69146 * 334.39445 * 6 5 4 27 27 C 1.34417 * 124.34709 * 299.97537 * 4 2 1 28 28 O 1.21280 * 124.94473 * 359.57674 * 27 4 2 29 29 H 1.08999 * 109.47024 * 299.99970 * 1 2 3 30 30 H 1.09002 * 109.46982 * 60.00021 * 1 2 3 31 31 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47024 * 240.00030 * 2 1 3 33 33 H 1.08999 * 109.47207 * 60.00142 * 3 2 1 34 34 H 1.09010 * 109.46885 * 180.02562 * 3 2 1 35 35 H 1.08993 * 109.47330 * 299.99947 * 3 2 1 36 36 H 1.08999 * 110.25296 * 315.99562 * 5 4 2 37 37 H 1.09002 * 110.24826 * 77.91283 * 5 4 2 38 38 H 1.09001 * 110.36340 * 322.92650 * 11 10 8 39 39 H 1.08998 * 110.36431 * 85.24883 * 11 10 8 40 40 H 1.08996 * 111.00404 * 81.07144 * 12 11 10 41 41 H 1.09006 * 110.99774 * 204.87525 * 12 11 10 42 42 H 1.08995 * 109.47405 * 95.07145 * 16 15 13 43 43 H 1.09004 * 109.47329 * 215.07354 * 16 15 13 44 44 H 1.09005 * 109.47174 * 335.06965 * 16 15 13 45 45 H 0.97002 * 119.99852 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.88184 * 298.39774 * 25 10 8 47 47 H 1.09002 * 109.87702 * 59.56111 * 25 10 8 48 48 H 1.09002 * 110.61609 * 266.39814 * 26 6 5 49 49 H 1.09001 * 110.42751 * 143.71336 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8655 -1.8888 1.1727 6 6 2.7613 -2.4951 2.5897 7 1 1.9680 -3.2411 2.6374 8 6 4.0790 -3.0847 3.0224 9 8 5.0369 -3.0384 2.2801 10 7 4.1928 -3.6634 4.2342 11 6 3.1141 -3.7887 5.2314 12 6 3.8445 -3.9237 6.5907 13 6 5.0764 -4.7817 6.1987 14 1 4.8191 -5.8408 6.1821 15 7 6.1923 -4.5357 7.1154 16 6 6.7303 -3.1816 7.2676 17 6 6.7325 -5.5713 7.8301 18 1 6.6061 -6.5877 7.4873 19 6 7.4425 -5.3149 8.9950 20 7 7.4158 -4.1131 9.5309 21 14 8.4358 -6.6756 9.8020 22 1 9.8162 -6.6720 9.2548 23 1 8.4842 -6.4498 11.2690 24 1 7.7965 -7.9868 9.5240 25 6 5.4116 -4.2802 4.7782 26 6 2.4092 -1.2496 3.4387 27 6 1.7484 -0.3081 2.4562 28 8 1.0771 0.6549 2.7610 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.4964 -2.5974 0.4312 37 1 3.8978 -1.6167 0.9525 38 1 2.4862 -2.8977 5.2249 39 1 2.5152 -4.6774 5.0326 40 1 4.1517 -2.9482 6.9677 41 1 3.2216 -4.4431 7.3190 42 1 6.2615 -2.6985 8.1249 43 1 7.8077 -3.2342 7.4246 44 1 6.5222 -2.6045 6.3666 45 1 7.9117 -3.9341 10.3451 46 1 5.7158 -5.1171 4.1496 47 1 6.2110 -3.5408 4.8271 48 1 3.3117 -0.7987 3.8512 49 1 1.7161 -1.5166 4.2365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971632521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:06 Heat of formation + Delta-G solvation = -35.871596 kcal Electronic energy + Delta-G solvation = -28399.099011 eV Core-core repulsion = 24555.149003 eV Total energy + Delta-G solvation = -3843.950008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.13585 -39.62806 -37.64241 -36.47597 -35.18444 -34.84817 -31.81321 -30.57396 -29.79750 -28.03521 -27.79864 -27.47577 -26.10128 -24.44009 -22.75557 -22.57579 -22.14931 -19.31983 -19.18185 -19.03935 -17.58874 -17.08892 -16.88832 -16.20422 -15.83600 -15.65873 -14.88323 -14.72980 -14.35647 -14.33739 -14.01087 -13.88120 -13.61020 -13.38384 -13.21216 -12.99981 -12.69089 -12.55945 -12.43658 -12.32985 -12.23953 -11.97341 -11.66769 -11.57758 -11.50399 -11.43334 -11.36832 -10.98995 -10.84468 -10.63261 -10.48236 -10.29024 -10.08353 -9.91710 -9.87763 -9.63964 -8.94787 -8.62333 -8.44712 -6.87796 -5.79641 -3.27056 2.37737 2.56066 2.65105 3.05954 3.34704 3.41246 3.42166 3.97544 4.09202 4.41899 4.43635 4.53503 4.68238 4.74711 4.84270 4.90001 4.95442 5.16534 5.19224 5.25357 5.32734 5.33332 5.36582 5.46837 5.49550 5.49921 5.53315 5.56562 5.67035 5.73028 5.84349 5.89168 5.94524 5.96929 6.22348 6.32262 6.36929 6.47239 6.57177 6.76034 6.81285 6.88165 7.34092 7.62438 7.68523 7.75145 7.96628 8.16855 8.31054 9.15098 9.77075 10.24897 11.25001 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.002467 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.580401 B =11344.877342 C =11531.729982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.617 5.617 5 C 0.117 3.883 6 C -0.119 4.119 7 H 0.115 0.885 8 C 0.536 3.464 9 O -0.542 6.542 10 N -0.606 5.606 11 C 0.093 3.907 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.079 0.921 15 N -0.587 5.587 16 C 0.161 3.839 17 C -0.260 4.260 18 H 0.071 0.929 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.908 3.092 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.086 3.914 26 C -0.146 4.146 27 C 0.523 3.477 28 O -0.528 6.528 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.045 0.955 44 H 0.000 1.000 45 H 0.253 0.747 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.110 0.890 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.816 4.948 -17.105 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.352 5.352 5 C -0.006 4.006 6 C -0.140 4.140 7 H 0.133 0.867 8 C 0.322 3.678 9 O -0.420 6.420 10 N -0.339 5.339 11 C -0.030 4.030 12 C -0.192 4.192 13 C 0.063 3.937 14 H 0.097 0.903 15 N -0.308 5.308 16 C 0.016 3.984 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.738 3.262 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.038 4.038 26 C -0.186 4.186 27 C 0.311 3.689 28 O -0.404 6.404 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.018 0.982 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.128 0.872 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.555 5.611 -17.291 22.676 hybrid contribution 0.572 -0.798 0.573 1.137 sum -12.983 4.813 -16.718 21.708 Atomic orbital electron populations 1.22186 0.94647 1.02364 1.03326 1.20947 0.94417 0.93205 0.86393 1.22191 1.01486 0.95706 1.03293 1.48489 1.51130 1.29308 1.06223 1.22001 0.96578 0.86218 0.95789 1.22203 0.97548 0.98139 0.96150 0.86669 1.19627 0.89240 0.78299 0.80595 1.90708 1.39911 1.58724 1.52622 1.48453 1.13915 1.56486 1.15028 1.22525 0.90210 1.01142 0.89128 1.23394 0.98706 1.02697 0.94378 1.21289 0.87602 0.97377 0.87481 0.90317 1.43877 1.33929 1.06217 1.46732 1.20820 0.98507 0.84107 0.94918 1.19231 1.29481 0.87728 1.02511 0.91148 1.25026 1.01229 0.96832 0.96364 1.70071 1.44086 1.20101 1.20829 0.86206 0.80301 0.81250 0.78452 1.21433 1.21709 1.20452 1.22809 0.86653 0.97638 0.96717 1.22437 1.03510 0.94331 0.98344 1.20703 0.79633 0.84920 0.83643 1.90700 1.39681 1.28562 1.81460 0.90958 0.91465 0.92477 0.89356 0.90927 0.92346 0.91477 0.89861 0.88914 0.91013 0.91404 0.90514 0.90256 0.94963 0.93612 0.98162 0.93631 0.91957 0.90730 0.87176 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.20 37.16 0.34 -0.97 16 2 C 0.15 1.26 3.47 -67.93 -0.24 1.02 16 3 C -0.17 -1.45 9.20 37.16 0.34 -1.11 16 4 N -0.62 -6.01 2.83 -164.84 -0.47 -6.48 16 5 C 0.12 1.07 6.66 -3.12 -0.02 1.05 16 6 C -0.12 -1.13 2.90 -90.05 -0.26 -1.39 16 7 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 8 C 0.54 7.26 7.10 -10.99 -0.08 7.19 16 9 O -0.54 -9.24 15.83 5.56 0.09 -9.15 16 10 N -0.61 -8.51 3.33 -170.51 -0.57 -9.07 16 11 C 0.09 1.09 6.64 -2.53 -0.02 1.07 16 12 C -0.15 -2.33 6.65 -24.59 -0.16 -2.49 16 13 C 0.17 3.19 3.43 -66.10 -0.23 2.97 16 14 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 15 N -0.59 -13.80 2.94 -171.39 -0.50 -14.30 16 16 C 0.16 3.80 7.66 59.85 0.46 4.26 16 17 C -0.26 -6.79 9.63 -15.06 -0.15 -6.94 16 18 H 0.07 1.79 7.82 -52.48 -0.41 1.38 16 19 C 0.00 0.11 5.14 -17.43 -0.09 0.02 16 20 N -0.91 -25.55 10.54 55.49 0.58 -24.96 16 21 Si 0.91 21.23 29.57 -169.99 -5.03 16.20 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.09 1.47 6.40 -3.06 -0.02 1.45 16 26 C -0.15 -1.46 5.38 -26.66 -0.14 -1.60 16 27 C 0.52 6.14 7.41 -10.86 -0.08 6.06 16 28 O -0.53 -7.79 15.12 5.56 0.08 -7.71 16 29 H 0.07 0.74 6.80 -51.93 -0.35 0.39 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.56 8.07 -51.93 -0.42 0.15 16 33 H 0.07 0.80 6.77 -51.93 -0.35 0.44 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.00 6.97 -51.93 -0.36 0.64 16 38 H 0.07 0.69 5.42 -51.93 -0.28 0.41 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.31 7.28 -51.93 -0.38 0.93 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.03 0.82 7.38 -51.93 -0.38 0.44 16 43 H 0.05 1.19 7.21 -51.93 -0.37 0.81 16 44 H 0.00 0.00 6.29 -51.93 -0.33 -0.33 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.07 1.45 6.13 -51.93 -0.32 1.13 16 48 H 0.11 1.21 7.90 -51.93 -0.41 0.80 16 49 H 0.11 0.95 6.77 -51.93 -0.35 0.60 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -31.68 378.66 -8.51 -40.19 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.07 Total: -1.00 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -0.34 Total: 10.58 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.95 Total: -54.82 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.17 Total: -16.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.68 -8.51 -40.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971632521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.319 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds